Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_12783
- Subject:
- XR_927512.3
- Aligned Length:
- 7050
- Identities:
- 186
- Gaps:
- 6839
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CCACGCGTTTCGAAAGATGGCGGCGTCCAGGAGCGCGGGAGAGGCCGGCCCGGGCGGCTCCCAGGGACGCGTGG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TCCGCATGAAGCGCAGAGGCGGGCGCGGGCCGCGCCGCGGTCCTGCTGGCGGTGGGGAGAAGGCCCTGAAGAGG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CTGAAGCTAGCGGTGGAGGAGTTCGTGCACGCGACTTCGGAAGGCGAGGCTCCCGGGGGTTGCGAGGGGCGCGG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CGCCCCGGTGAGCTTTCGCCCGGGAGGGAGAAAAAGCCGTAAGGAACTGAGGAAGGAGAAGCGGCACCTGCGGA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 AAGCACGCCGGCTGCAGAGGACGGCGGGCCCCGAACAGGGTCCCGGCCTGGGAGGCCGAAGCGGAGCCGAAGAA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GCCAGCGGTCACCGGCAGGACACGGAGGAGCGCGCCCGCCCAGCCCCTAGTCGGGACCCCTCGCCTCCCAGGAA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GCCGCGGCCGTCCCGGGTCAAGGCCAAGGCCACGGCCGCCACCGCAAAGACCAGACCCTCCGCAGCCGCCACCG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CCGCTGCCCGGAAACGGGCGCTTTTAGCGGCGAACGAGGAGGAGGACCGAGAGATCCGAAAGCTGGAGCGTTGC 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CTCGGTTTGAACAAGCGCAAAAAGAAGGACGGCAGCAGCTCCGTGCCGCTGAGCTTTGCACGCGACGGTCTTGA 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 CTATATTCTGGGAGCCCTGGAGTCTGGGAAAAATAGCGGCTTGTACGACAGCAGTGGTGAGGAGGAGGAAGATG 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CCGGACAGACACTCCCCGAAAGTGACTTAGAGAGTGACTCCCAGGACGAAAGTGAGGAGGAGGAGGAGGGAGAC 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 GTAGAAAAGGAAAAGAAGGCGCAGGAAGCAGAAGCGCAGAGCGAGGACGACGACGAGGATACAGAAGAGGAACA 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 GGGGGAAGAAAAGGAAAAGGGAGCGCAGGAGAAAAGGAGGGGGAAGAGAGTCCGTTTTGCAGAAGATGAAGAAA 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 AGAGTGAAAATTCCTCGGAGGACGGTGACATAACGGATAAGAGTCTTTGTGGAAGTGGTGAAAAGTACATCCCA 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 CCTCATGTGAGGCAAGCTGAGGAGACAGTGGACTTCAAGAAAAAGGAAGAACTAGAAAGGCTGAAGAAACATGT 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 AAAAGGTCTACTTAACAGGTTGAGTGAACCCAACATGGCTTCCATCAGTGGGCAGCTGGAGGAACTGTACATGG 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 CCCACAGCAGAAAGGACATGAATGACACCCTGACCTCCGCTCTCATGGGTGCCTGCGTCACTGCCTCGGCCATG 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 CCCAGCAGACTGATGATGGAGCATGTTCTCTTAGTCAGCATCCTTCACCACACAGTTGGAATCGAGGTCGGTGC 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 CCACTTTCTGGAGGCAGTGGTGAGGAAGTTCGATGCCATCTATAAATACGGAAGCGAAGGGAAAGAGTGTGACA 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 ACCTGTTCACCGTCATTGCCCATTTATACAACTTCCACGTGGTACAGTCTCTCCTCATCTTCGACATTTTGAAA 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 AAACTGATTGGAACTTTCACCGAAAAAGATATTGAACTGATCTTGTTAATGCTGAAAAACGTGGGTTTTTCATT 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 GAGGAAAGATGATGCTTTATCACTTAAGGAATTGATCACTGAAGCCCAGACCAAAGCCAGCGGGGCAGGCAGCG 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 AGTTTCAGGACCAGACCAGGGTACGCGTGCGACGCTTGATCTGCTTCCTAAGTCCCTAAAGCTCACAAACTGGC 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 CAGAACCTAAAAATCAGTATCTGGGATTCGGTTTATGCTAGAGACGATGTTGGCCCTGAAGAACAATGACATGC 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 GCAAAATTCCAGGCTATGACCCCGAGCCCGTGGAGAAGCTGAGGAAACTGCAGAGAGCTTTGGTCCGCAACGCC 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 GGCTCAGGTTCTGAGACGCAGCTTCGCGTCTCCTGGGACAGTGTCTTGAGTGCGGAGCAGACGGGTCGCTGGTG 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 GATTGTGGGGTCCGCCTGGAGTGGGGCCCCGATGATCGACAACAGTCACCATACGCACCTGCAGAAGCAGCTTG 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 TGGGGACGGTAGGGACACCCATGCTCAAGGCTGCCAGGCAGAGGCACCCCCCTGTGTGGTGTGTGGTCCTGGCT 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 TTACCTGGAGCAGCTCTCTTACTGTTCTTGAATGGTCACTGAAATGTACAAGGTTTATCTGGAGGCCTTACAGA 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 AATTGCTATTAATATTACATTGTGATATAATTATTCCATTTCTGTTGTATCTTTTTATTGGACTTTAAAAGATC 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 TAAAAGTTGAATGGCACGGGGCAGGGGAGCGCATGAGGACCTGAACGCTCACGGGGCAGGAGTCCGTTGCTGAG 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 ACCCCTCAGGCTGCCCCCCGGGCTGTGCATTCTAGGCTACAGGCTATGGATTTCACATTGTGGAAATTCAAGCC 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 CATTTTTCATCCAGACTTCCCTCGTTATCCCCTCATGTCCTTCCCTGTCCCAGATTCTGTGTCACTCATGGTCA 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 CGGTTTCCCAGGCTCTGCCAGTGACTGGTTCTCTGTTTTATTCATCGTCGCTTGCCCTGAGGTTGAACCACGAC 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 TGAGAAGCCTCCCACATGAGTGTTTTCTCCCCCAGCGGCTGTGGCTTCACTATGTGTTCCCCTTGCACAGAGGG 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 GCGTTGCCCGAGAGTGGACTTGGTGCCATCCGCCCACGTAGACCTCACAGTTCTATTCAGTGACACTGAAGTAC 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 AGTTTGGCACCTCTCGGGAGGCAGTTTGCATGGAGACATGCGTATGACTTGTCCATTCATCGTGCTTCCAGGTC 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 AGTTCAAAGATCCTAGAACTCGCCCGGAAGCAGAGGATGAACACAGACATCCGGAGAAACATATTCTGCACAAT 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 AATGACAAGTGAAGATTTTTTGGATGCTTTTGAAAAGCTTCTGAAGTAAGCATTTGTGTGCACATTTTGACCTA 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 TTAATGAGATGCTGTAAAATAAGTAAGTTGATTTGCTTTTTGAGTTTTGGACGACTGAGTCTGATGCTGCCTAG 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 GGAGGACTGGGCTGTTCTCATGACCATCCGCTCACGCTGTTGGATTCGTGCATCTCTGGGCTTGGACTTAAGGA 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 TCAGCAGGAGAGAGAAATCATTCACGTTCTCATGGATTGCTGCCTTCAAGAGAAAACTTACAATCCCTTCTATG 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 CTTTCCTGGCTAGCAAATTCTGTGAATATGAAAGGAGATTTCAGATGACTTTCCAGTTCAGCATATGGGACAAA 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 TTTCGGGACTTGGAAAACTTGCCAGCTACGAATTTCTCTAATTTGGTTCATCTGGTGGCCCACTTGTTGAAGAC 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 AAAATCGCTTTCCCTTTCCATCTTAAAGGTAGTTGAATTCAGTGAATTGGACAAACCCAGAGTCCGTTTTTTAC 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 GAAAAGTATTAAGTATCCTATTAATGGAAACAGAAGTTGAAGACCTCAGTTTAATTTTCACAAGAGTATCTGAC 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 AACCCAAAGCTGGGGGTGTTACGTGAGGGTTTGAAGCTTTTCATCAGCCACTTCTTGCTAAAGAACGCACAGGC 3478
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3479 CCACAGAAGCGCCGACGAAGCCAACGTGCTGAGAGAGAAAGCTGACCTTGCAACGAAGTGTCTGCAAGGAAAAG 3552
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3553 CTTCCCTGAGAATGTAGTCAGGGAAGGAAGGAGGGCAGGTGGCCCTTTGACTGTAAAATGTCCTTGGTAAACCC 3626
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3627 AAAGGCTTATTCTGTTGCCTGCGTGTGAATGTTTGGTAGAGCTATATCATTGTCTGTTAATGTATTATATTTTG 3700
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3701 AGATTTTTTTTGATCTAAGGTTTTATTGTTTGTATTTCAAGCCATTTTCAAATAACTATCTTGGGGGTGAGAGG 3774
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3775 AGAAGGAGGGAGGGAAAAGGGGTCAGGCACACTGGACAGGGTTCTCTAAGCAGTGAGGCTGGTGTGTATGATTG 3848
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3849 TCTTAAAATTTTTTAATAGATATGGCCGAGCGTGATGGCTCACCCCTGTAATCCCAGCACTTTGTGAGGCCAAG 3922
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3923 GTGGGCGGATCACTTGAGGCCAGGAATTTGAAACCAGCCTGGGCAAAACCCTGTCTCTACTAAAAATATAAAAA 3996
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3997 TTAGCCAGGCATGATGGCACATGCTGGTAATAGCAGCTACTGAGGTGGCTGAGGCACAAGAATTGCTTGGACCC 4070
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4071 TGGAGGTAGAGGCTGCAGTGAGCCAAGATTGTACCACTGTACTCCAGCCTGGGCTGGACAGTGAGACTTTTGAC 4144
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4145 AGTGAGACTGTCAAAAAAAAAAAAAAAATTAATAGATAAAACAGGCCACTAGAGGGTGCAGTTATAAAGAAATT 4218
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4219 GATGAGGTTTTTACCTTTTTAAAATATTGGTTAGAAGTTCAAAAACCATCCCTTAAAGGTGATTGTTTTTTTGA 4292
Query 1 -ATGGAGTCTCATTCTGTCGCCCAGACTGGAGTGAAGTGGCATG--ATCTCGGCTCACTGCAACCTCTGCCTCT 71
|..||||||...||||||.||||||.|||||||.||||.|.|| |||||.||||||||||||||||.||||.
Sbjct 4293 GACAGAGTCTTGCTCTGTCACCCAGAGTGGAGTGCAGTGTCCTGTAATCTCAGCTCACTGCAACCTCTACCTCC 4366
Query 72 CGAGGTCAAGCGATTCTCCTGCCTCGGCCTCCGGAGTAGCTGGGATTACAGGCACACGCAACCATGCCCGGCTA 145
||.|.||||||||||||||||||||.||||| ..|||||||||.|||||||.|||||.||||.|||||||||
Sbjct 4367 CGGGTTCAAGCGATTCTCCTGCCTCAGCCTC---TTTAGCTGGGACTACAGGCGCACGCCACCACGCCCGGCTA 4437
Query 146 ATTTTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAG 219
| |||||||| ||||||||||||| ||||||||||||||||||.||||||||||.|||||||||||||||.|
Sbjct 4438 A---TTTTTGTA-TTTTAGTAGAGAT-GGGTTTCACCATGTTGGCAAGGCTGGTCTTGAACTCCTGACCTCAGG 4506
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4507 TGATACACCCATCTCGGCCTCCCAAAGTGCTGGGATTACAGGCTTGAGCCACCACGCCCAGCTTAAATGTGATT 4580
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4581 CTTGATACTGTTTTAAGTATTTAGGTTGCAATTAACTTTGGCAAAGTCAGTCGACATAAGCCCTGTGGATATGG 4654
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4655 CCTTATGTACACTGTAATGCAGACAGGTGCTTTTCATCATTCATGTAACATTCTCACACAGTTGAGGATATTCA 4728
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4729 TCTCCTCACCAATTCCAGATTGTAAATGTACCATCTTAAACAACTCTGAGGTCACCAAACAGTAGTTATTTGAC 4802
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4803 TGTTAATAGGTGCTACTTGCTTGCAAGGATTTGGAGATGTAAACATGAAGAAAATATAGTTACTGCCTGCAAAG 4876
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4877 AATTAACATCCGTCTAGTGGGAGAAACAAACACACCCCACTCACTAAGTATGGAAAACTGATTCTGGGAGGAAG 4950
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4951 CAGAAATGTCCCTAGATAACAGCATGTATTGCAGATACCCAAATGTTTATTGTTTTCTCAGCCCTTCAATTTTG 5024
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5025 CTTTTCTCTCTCAAATGCTACAGACTCAATTTAAATCTTACCTTTGATTGTTGAAAAAAGTCACTAAGATGTGA 5098
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5099 ATACAGAATAGACATTGAGAGGTTATATATGTCCAAAACTCATCTGTCCAGCAGTCACCGTCCTCTTCAGAGTG 5172
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5173 GTCACGTTGGGCAGATGGGCACAGGTGCTGGTGATGCCTCTCCTGGGCAAAACGCCCCATTTGTGGCACTTTCA 5246
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5247 GATACTATTTATTTACTTTTTAAGAGAGAGACAGGCTCACTCTGTCACCCAGGCCAGAGTGCAGTGGCACGATC 5320
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5321 ATAGTTACCGCAGCATCAAATTCCTGGACTGAAGCGGTCCTTTTGCCTCAGCCTCGCGGATAGCTAGGACCACA 5394
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5395 AGCAGTAGAGACAAGATCTCCGTATGTTATACAGGCTGGCCTCAAGTGATCCTCTTACCTTGGCCTCCCAAACA 5468
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5469 CCGGGATTATAGGCGTGAGCCCCCGTGCCTGGCCTCAAATTTTATTTTAGCTCGACCCTATGGCAGTTTGTGTT 5542
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5543 TGGAAATCGTGATGTGAAGTCATCAGTATCTGTGCATATCCCTAAACTAATGGTTTAAGCTTTGAAGCATGCGC 5616
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5617 AAGCAACATGAACAACTGAATACAGAAAGTAACTGAAAGCAGCACAGAGACTGTGTCGTCCCTACAGACTTCTA 5690
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5691 ACCCTGCATTCAGCAACATCATTCGACCCGAAGCCAGATTCAAACCCTATGTCTTCTAGCAGGTTCTGAATTTA 5764
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5765 GAGGACAAATAAGGTGACAGGTACTAAGAGAAGAGTGAATTAAGTGAAAATCTTCCCTTTGTTAAGGAGCTTTT 5838
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5839 TAACAAGAGTGTCTTTGCTGGGTGGTGATTGGGATGTAACAGATCAGTTCTACTGGACTTGTAGCTTGATAGTG 5912
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5913 AAATAAGGAGCTTGGGCTAAGGTATAAATCAACACACTGCTTCCTTCCTCCAGAAGGTCTTACTGTGAAGGAAA 5986
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5987 AAATGTCAGTTGAACTAAATTGTGCTTCACGCCTCGGTAGATTTGCATTCTGATGCAAGCCCCCAACCTCACGG 6060
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6061 ACCAAGAGGATCCCTGGCTGCCTGTGAATGGCCCACATTTGAGTGGTGCTAACTTGATGTGAGTAGGCATTAAT 6134
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6135 TATGGGTGCGGCTACTAAGATGGGAAAAACTATCACGACAGTGGCACCACCTGATTTCATGATGTACCATATGC 6208
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6209 AGTAACCCATGTTTGAGGTACAGAATTGAAGCTGATTTTTCTGCAAAAGATGAATTTCTATAAACAATCCCATT 6282
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6283 TTTATATTTTATTATTAAAACAAAAATACCTCTCTTTGCTAGAGAGTTATATGTATGACTTAAATTATTAGCTA 6356
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6357 TGGTTTGCATTTAGTACATGGCAGATTGCCTGTAAGTCTGTTCATTTTAACAACATACAGGGCTGGGCACGGTG 6430
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6431 GCTCACGCCTGTAATCCCAGCACTTTGGGAGGTTGCGGGTGGATCACTTGAGGTCAGGAGTTCGAGACCAGCCT 6504
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6505 GGCCAACATGGCAAAACCCCGTCTCTATGAAAAATATAAAAATTAGCTGGGCATGGTGGCAGGCACCTGTAATC 6578
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6579 CCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACCTGGGAGGCGGATGTTGCAGTGAGCAGAGATCGT 6652
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6653 GCCATTGCACTCCAGCCTGGGAACAAGAGTGAAACTCTCAAAAGCAGAAACAAAAACCCAACATATATGGGCTG 6726
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6727 TTAGATAGTAATTGTAATTTCGTATAAATAGTAAATGAGTACATCTTGATTAAAAGCTATGAATTCAGAATTGC 6800
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6801 TTTTAAATATATAGGGGGTTTTTTGAAATTTATTACAGTGCAATTGAAAATACACTTAAAATACTGCAGGATGC 6874
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6875 TTAGTGCTCAGTGTTATGTATGAACTTGTGGACTTTACAATGCAGGTTGAGAACTGCTAATGTATAGAATGACT 6948
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6949 AAACAGCTGTCTTTCAGGGTATCATTTTTAAAGGTATAAGGAACAAACTTTAATGTATTGAAATGCATAAATAA 7022
Query 220 -------------------- 219
Sbjct 7023 AATTTATTTTTTATATTTTG 7042
