Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_12783
Subject:
XR_933748.3
Aligned Length:
4665
Identities:
190
Gaps:
4448

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GTGTCCATCTCTTCACAGTCATGGCTGATCTTGTCATCCACTTTTGGGAGATTCTCCTGTATCTGGGCAGGGTA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TGCCTTCTCTACATCAGGATCTCATTCCCATCACCCAGAATGCAGTGCTGTGGCACGATCACAGCTCTCTGCAG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CCTCAATTTCCCAGGCTCAAGCAATTCTCCCACCTCAGCCTCCCGAGAAGCTGGAACTACAGGAATGTGCCACC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GCATCGGGCTAATGTTTTGTATTTTTGGTAGAGACAGGGTTTAGCCATGTTGCCCAGGCTGGTCTCGAATTCTT  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GGGCTCAAGCAATCCTCTCACCTCAGCCTCCTAAAGTGCTTGGACTAGAGGTGCAAATCACCATGCCTGACCCT  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  TTATCTCTACTTTTGGCCAGAAGCAATCCAGTTAACACTCTATCATATATTATTCCTCCTACTGTTTTCTCCTC  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  TCTAAATTCTTCAGCTTTGGCTGTTTGCCCATTAGTCACTGCCTGGGAGTTTTCAACTTTTAAAATTTGTGACA  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  ACATTGTTAGGTCATTAAGATGGGTCCTCATCCGATGTAACTGGCGTTCTTACAAGAAGCAGGGAAATGACGTG  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  GCGGAGACACAGGAGGGGGAAATACCGCGTGATGATGGAGTTAAAGACAGGAGTTATGCAGCTGCAAGCCAAGA  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  ACACCAAGGGCTGCTGGTGACAGCAAGCGAGGAGGGAGCCTGGCCCTGCTGGCATCTTGATTCAGACTTCCAGC  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  CCCTACCACTCTGAGAGAATAAATTCCTGTTGTTTTAAGCCACCCAGTTTAGGGTGCTTTGTTGCAGCCGCCTT  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  AAGAAAGGAATACATCGTATCATTCCCAGAAACTGCTTGAGTCCCAGGGTTTGAGACTGGAAAGTGCTGAGCCT  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  CCCTCACTACCAGATGCCACCTTGGCGAGGAATGCAGGGTGTTGGTTTCCAAGGCTGCTGCTGGTGAGGTGGAC  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  AGTGGAGGATGATAATAGGATGAGAAATTGGGGTTTTTCAGATGTGATTCCGTTGTCCAAGATTCTTAAGATGA  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  AAACAAAGTTGATATCTCACTCACTTCGATTTGATGCACTTTACCTTCCATAGCAAATATTTATTACATCCGAC  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  AAGACAAAGGCAACGGGCAGAAAAGTGTACAGCCATTTCTGTCACACTGAGAATCAAGCCTGGATTGCCTCCAG  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  TGAGAAGATGATACAGGACTATTATAAGGACAAGATTTTTCAGGATAAGACACAGTTCTCATGTGTTCAGACAG  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  ATTGCTTTTCAAATCACTCTGTATAGGGATGGGTTAAACCCAGCTCTAAAATAAATATTTATATGCCCTAAAGT  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  TTCCAACTAGGAAGGCGGAAAGGCTCAGATATCAATGACCAGCATGGGCAGTGACATGGGTGAAATGTGGTGTT  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  GCTGGCATCAAATTTTCTCAGCTTTCAACTATTCTCTGTTTTTCTAGAGGATTGAATACATCCTGATATTTGAG  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  AACCAGTTGTTAGGCAATGCATTTGAATTATTAATAAGAATGAAGAGGTAACCATGGCAAGAGAGGAAAAAAAT  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  AAAACTAGCTCTCCAGGTTGCGGAGATGGTACCTGCAAACTGCTAAGATACATAAAAGCAAGGGAATACAACTT  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  AGAGCATAGATGCTTAAATGCACTTCCTTTCTCTCATCCACTACCTTAAAGGTAGCAATTATGCTTTATGTGTC  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  CATGATAACAAATGTCTTCTCCATTCATCTGTGGCTAGTAGCTTACAAGGCAAAGATTGCACACAAGGTGACAG  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  GTTTGCTCTCCTCCCTTCCCCACCCCCACTCCCGCACATCCCCCTGTAAGAGGGACCTCTCATCCACGTCTCCC  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  AGAGATTACTGCAATTAGCATGTTTCCTATCAACCCTTCCTGTAAATCTTTGGTTCAAGGAAGTTTCCTTCCAT  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  CCCTCACCTAGAAGAAAGTAGACAAAAACACAGGCTCAGCACTTTCCAAGTCAAAAAATATAGTCAGGTCCTCA  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  CCAAACATGGGCAATTCTCTGCTCTTTATCTATGCATTTCCTCAACCTTACATTGACTCAAGGAAGATATGCTT  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  CCCCTTAGGAGAGCCAAGTGAGTTAAAAACCATTGTCATAGTGTGCCCAAGTGTGAAAATTATTAAAGTACCCT  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  TTTGTACAGCTCCTGGATGAGAGGAGACAATAGCTGGTGGGGCTGGAGTGCAGGTCTTTAATCTTCTATAGGAG  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  TCACCCGTAAAATTTGATTCGTTCAATAGAAGGGGTGCTGGAGTACCTGCTAGAAGTCAGGCCCACCCTGTGCT  2294

Query    1  ------------------------------------------------------------ATGGAGTCTCATTC  14
                                                                        .||||.|.|||.||
Sbjct 2295  CTGTACTTGTCTGTACTTGACACACATTTCTCTTGAGGGCCTTTTTTTTTTTTTTTTTTGGTGGACTTTCACTC  2368

Query   15  -TGTCGCCCAGACTGGAGTGAAGTGGCATGATCTCGGCTCACTGCAACCTCTGCCTCTCGAGG-TCAAGCGATT  86
             |||.||||||.|||||.||.||||||..||||||||||||||||||.|||||||| ||.||| ||||||||||
Sbjct 2369  TTGTTGCCCAGGCTGGAATGCAGTGGCGCGATCTCGGCTCACTGCAATCTCTGCCT-TCCAGGTTCAAGCGATT  2441

Query   87  CTCCTGCCTCGGCCTCCGGAGTAGCTGGGATTACAGGCACACGCAACCATGCCCGGCTAATTTTTTTTGTATTT  160
            ||||||||||.||||||..|||||||||||||||||||||.|||.||||..|||.||||| |.||||||.|.||
Sbjct 2442  CTCCTGCCTCAGCCTCCCTAGTAGCTGGGATTACAGGCACCCGCCACCAGACCCAGCTAA-TCTTTTTGGAATT  2514

Query  161  TTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAG---------------  219
            ||||||||||.||.|||||||||||||||||||||||||||.|||||||||||||||.|               
Sbjct 2515  TTAGTAGAGACGGTGTTTCACCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAGGCGATCCGCCTGCCTC  2588

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2589  GGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGCACCCGGCTGTCTTGAGGGCCTTTTGGACTTAGGA  2662

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2663  GGAATCCAGATCACATAGAGAGATATTCCGTTGTAGGGTAGAGTAACACACAGGGAACACTGAGATGAGGGGTC  2736

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2737  CTCCTTCTTGCCTAAACAAGTCAGGAAACATTTGCTGAGGAGGGGGCCTTGAATGTGGCAGGGGATCTACAATG  2810

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2811  CTGTCCACCCTGCTGGTGATAACTCCTTGAAAGCTTATAGCCTTGTTACCTTGCTCACCAAACTACAATGGATC  2884

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2885  CCCAGAATAATAAATCCAAATTCTTTTGATGGCAACTGAACACCCTAATTACCATTCAGCATGGTTCTCTTGCT  2958

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2959  CTTCCCTTCAAGCAATACTAGTTTCTATTCCTCCTGCTTATCCTTCCTCCTGTGCTGCCATTTAAAATGTATAT  3032

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3033  TTTTCCAACTGCCGCTTATTCAAATCCTCTATTTTCTTTCGTAGTCCAGCTAAAGGCTTACTTTCTCCAAGAAA  3106

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3107  CATCTGGTTTCATACACATATTTCTTTCACTATACCTTCCGCCTCTATTGCAATGTCATAAATTTGTTCTGATG  3180

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3181  TTATTTTGAAATAGTTTCTGTTGTGTAAGAGTACCTTGTCTCCCTACAGGGATAAAATTCCCAAAGACAATAAA  3254

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3255  TTCAGAGTTCTAGCAGATAGTTCAAAGAGCAGGAGGTTATGAGAGAGAGTACCTCCCCTCCCTGATCCTCAACT  3328

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3329  CTCAGGCTGAGCTGTTCTCTGGATAGTGCAGCAGCTAAAGTCTTGGTTTCAATGAAGATACGTTTCCCTATCCC  3402

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3403  CAGAACCTGTGCGGAGGAGCGGTCCTCTAATGCGGTGTTGGTGAAGAAGGATTCGAGAGGGAAATACCAGGAAG  3476

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3477  CCCACAGCTCCATTTCCCCTCCCAGATTCTACAGATGCAGGGTGGGTGGTCTCTAGGGAGACTTCTCCGGAACT  3550

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3551  AAGATGTATTAGTTCCGAGGACTGCCGTTACAAACACACAAACTTGGTGATTTCATAGAAGTTTGTTCTTGTAT  3624

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3625  AGTCTAGAGCCCAGATGTCCAAAATCAAGGACCATGCTTCCTCCAGAAGCTCCACGGAAGAATCCGCTGCATAC  3698

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3699  CTTCTCCTGGCTCCTGGTAGCTGCTGGCTGTCCTTGGTGGACTCTGGCTTATGGCTGCATTACTCCAATCTCTG  3772

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3773  TCTCCTTGATCATATTGCCTCTTTCTCTTCTCTCTGTCAAATAAATCTCCCTTACGCATCTCTTATAAGGGAAC  3846

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3847  ATCATTGGATTTAGGGCCCAACCAGATAGTCCAGGATGACCTCTTCATCTAACAGTCCTTCATTTAATTACATC  3920

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3921  TGCAAAGACCCTTTTCCAAATAGAGTCACATTCAGAAGGTTCTGGGAATTTGGACACGAACCTTTTTGCAGGCC  3994

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3995  ATCATTCAACACCCACTACATCAGGTTTCTGACAGTACCATGGTAATCGAATTCTCTGAATTTTCCTCTAACCA  4068

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4069  TGGTGATTTACGAAGCATACTCATCATTCAGCTTAAGTATGACAAATAATAAAGTCACTTTCTGCTCCTGAGTT  4142

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4143  ATTGGCTGAAATTTATACAGGGAGCATTTGCAAAGTGCTTTCACGAAAAAAAAAAGATAAACTAACTCTGCCCT  4216

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4217  CAAGGATATTATAATCCAGTAGGAAAAGTAAATATGTACACAAGTTTAGGAGAGTTGAATGAAGGTGAAAAACA  4290

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4291  CAATACTGTGAAGCAAGATTGGGGAGAGAATAAAAGCTGTTCCTTTTCTCTCTCTTTCTTCCCCCACAGCACTC  4364

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4365  TTGCTGGCATGCATTCAAACACCTTATGCACATCACAACTGTCCCATTAGCTGATGCTTTAGGTCACTTCTTTT  4438

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4439  GGCTGAAGGCCAATGGATACCCTTTGATAAATGTGACTTTCTGGAGTTCCCATGAGCCCCAAATCTGAACCTGT  4512

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4513  CATACAGAAAATTTATATTAAATATATGGCAAATGCCTCAAAAAACTCAAAGAAAAGCCAAAGTGAATAATACT  4586

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4587  ATTTTTTCAGATTTATTTTCTTTAGTAATGTGAGTCTATGGATAATTTTATATAAAGAAGATATATATTATGTG  4660

Query  220  ---  219
               
Sbjct 4661  CAA  4663

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