Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_12783
- Subject:
- XR_935293.2
- Aligned Length:
- 5014
- Identities:
- 192
- Gaps:
- 4795
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATAGGTGTTGGTGCAGAACGGTTAAGAAGGCTCCTTCTGTACCAGAAGTGAGGCCCAAGTAGGAGCTTATTCTG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AGTCAGTGGAAATCGTGCAGACCTTCCAGAAGGGAATGATGTAATTGGAAAGCATTTTTGGATACTGCACGGCA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GTCGTTTGAAGAAAAAACTGGAGAGATGGGGGATGGAAGCCTGGGAGTCACATTTTTTCAAGCAAGACATCACA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GAGGGTGAGGCCCAGTGACAGAGATGACAGATATTCAAAGATGGAATGAAAGAGGTTTGGTGACTGGATATAAG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CAACGAAACAGGAAGAATTGAATTTGGGTCTGATATTTCCTGGATGCAAGATCAGGAGGATGTTGGCACCATGG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CTTAGTGGGGAAACTGGGGACCGATTCTGGAGGTATACCAGCATGGTGAGTTTGGTTTTAGATGGGTTGTGTTT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GACATAGGGCTAGCAATTCTAAGTGAAGATGTCTAAAGAAAGATAGAAGTGACTCAGCTCTGAAGTTCTGAAAT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GATCAGCCATCAGCGTGGCATGAGGAAGACCTAGGAACAGACAGACTGGGGAGAAGACACAGAGCCAAGCAGGA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CCTGGCCTGCAGCCCAAACCCTGTGGAATCCCTACATTCAAGGACCAGGTTGAAGTGAAGCCATTGACAGGAAC 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TGAGATGCAGTAGTGTTCTGGAAGTCAAGTGAGGAGGAGGATTGAAGAAGAGGGGGGTTGCCCAGTGGAAACAC 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CAGACTGCAAAGCTTTGAGAAGTCTGTATGAGATGAACAACTGGAAAAGGTTCTTCGTGAAGAATTTGTGTGGT 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 GAAGAGCTGGAATAGCGGCTTGAGGGAGAGAAGCCAGATGGAGTCTCACTCTGTCGCCCAGGCTGGAGTACAGT 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 GGTGTGATCCGGGCTGACTGCAAGCTCTGCCTCCCGAGTTCACACCATTCTCCTGCCTCAGTCTCCCGAATAGC 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 TGGGACTACAGGCTCCCACCACCACACCCGGCTAATTTTTTGTACGTTTTTTTTTTTTTAGTAGAGACAGAGTT 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 TCACCGTGTTAGCCAGGATGGTCTTGATCTCCTGACATTGTGATCCACCCGCCTTGGTCTCACAAAGTGCTGGG 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 ATTACAGGCGTGAGCCACCGCACCTGGCCATGTTGATTTGTTTTAATGGTAGTTGCAATACTTGTGAGAGTGAC 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 ATCCACCTGGATGCTGACTTGAATGGAATTTCATAACTGTTGGGTACTGACCATGAGTTGGTGTGGGGACATAC 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 AAAGTTGAACAAGACATAGGCTTGCCTCATAGTGTCTACAGCCTGGAAGAGGGAAGAAAGTGACAACACAAATA 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 GTTCTGCATCTTATGAATTCATGGGAAGAGGAGAGGTGTCATAAGACAGGTATGCAGTGCTGCAGAGGTTTGGA 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 GAGGTTGGATCAGGTTGGGGTGTGGAGGGCGGGGAGGGAAGGAGTTCAGAGAACCTTTCCTGAAGAAGGTAGCA 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 TCTGAGCGGACATCAAAGGTGAGCAGAAGCTGCGTAAGCTGAGAGAGGGTGGAAAAGAGGGCGTTTCCAGTGGA 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 GGGACTTAGCACAAGCAAAGACAACAAACCCTTGGGCCTGTAAAGGAAACAATAAATTAATTTGTCTAGAATGT 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 GACAGTAGTGGAATATGAGATTCAACGACTGTCCTAGCTCTTTTTGAAAATTTTGCTTTCTACATAGTTACTTA 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 ATAGCTCCAATCTGGAAACAACCCAAATGTTCATTAACAGAAGACTGGATAAACAAATTGTGGCATATCCAGAC 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 AATAGAATGCTACTGAACAATTAACAAAACTGTAGACACAACATCAACAAACCTAAAAATAATTATGTGTCATG 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 AATGAAACCAGAAAAAAGAATAAATACTTCATGATCTCATTTATAAGAAAATTCTAGATAAGGCACAAACTAAG 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 CTACAGTTAATATGTAGTTTCCAGGGGATTCGTTATCAGTAGTGCAGAGAGAAGAGGATTATAACAGACATGAG 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 GTAATGTGTTGGGTGATAGATATGTTCATTATCATAGCTATAGAGATGGTTTGAAATATATGTACATGAAAAAT 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 GTATCAAACTGTATACTTGCAACATGAGTTTTATTGCATGTCAATTATACTGCAATAAGGCGTTTAAAAAAGGG 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 TTCTACATAAAAATACAAATCCACTTATTTTAGAAAACCAGAAGTTTTGGCAACCGTATGCTGATTCTGCCATC 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 TCCAGCCTGATTCCTTGGGAGAGGTTAACCTTCCACAGTGGTGGCAAAAGTCAGCAGGCAATGAAGGCTATTTC 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 CACCTGAGTCACCAGAAAGAATGGCTAGGTCATAAGCCACATGGCTGGACTCTATCTACCTCCCTGTAATCTCC 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 ACTCTTTCACCTGTGCCAGCAATGGTTTAGAGATGAACAGACCATAAAGACTATGGAAATCCAATAATCTTTAA 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 TGCATTTGCTCTGTCAGTGACATTTGCCATAGGAGAGAGAGAGATTTGGAATTTATAATTTGTACACCCTGATT 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 CTGCACAGCCTTAGTCTCTGACAATGTGTGAATGCATATTTGGAAGGGACACATTCTCCCAGTTTACTGCAATA 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 TCCTCGCTCCCTATTAATTACACCCAGTGATTAAGCCCACAATGCCTTTTAAATTTTCCCAGCAAGCCTTGTAC 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 AACAATCCAAATCAGGCCAAAAGTAGGAGGAGAGCTATTTTCTTCCTGCCTGCTTTCCCTCTGAGCATACAAAT 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 TTGGAGGCCCCATAACAACTGCTCCCCTCTTCATGCTGGCAGAGCCTAATTATTTCTCAACTTATCCCTAAACA 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 AAGAATAGATCACCAAAATACTTCAGATGAAACGTAGAGCAGACAGGTCCTGGGCTGGGAATCCAGGAGACTGA 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 TGCAACAAATGCAACAAAGAGCATTAAGAGACTAGCAATGTCCATGAAGAAGGGAACCTAATAAGTAAGCTGCC 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 ACAGCTCAAGTCCTCCTGGCCAAAGCCAGGTCATGTCCCTCTATAACCAGCCAGTGAGAAGGGAATGAGGTCCC 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 TAAACGGGTTCGGGGGATTCATGATTCTCTCTGGGGACTGGAGAGAGAGCCTGGAGGTCTCACTTTCTTGAGCA 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 CATCGGGGTGACTGATGGACCCTGCCGGGTGGTCAAGGTGAGATGGCTTCTGGCACAGGTATTGGATGTGACAT 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 AATCCTTGCGAAGGGCCTAGACAGTTAAGGAAGTGCACCCTACCTCCTGAAAGCTCCCTCCATACCTGGCACTA 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 AAAGGTATTATCACCAGTTCAGATATTTTGATATATATGGTTCGCTTCTGTCTGATGACTCCCTGCAAAAAGGC 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 TACCCTCCAAGCTACCCTCTAGGGTGAGTCATTAGACAGAACAAGGATATAACACATCCCCTGCTCTCCTAAGG 3404
Query 1 -------------------------------------------------------------------ATGG--- 4
.|||
Sbjct 3405 AAATTCTCTCAGTGTGAATTTTCTTGTGCTGAATGAACAAAGATTTTTTTTTGTTTGTTTGTTTTTTTTGGTTT 3478
Query 5 ----------AGTCTCATTCTGTCGCCCAGACTGGAGTGAAGTGGCATGATCTCGGCTCACTGCAACCTCTGCC 68
|||||||.||||||.|||||.||||||||.|||||||.|||||.||||.|||||||||||||||
Sbjct 3479 GTTTTTAGACAGTCTCAGTCTGTCACCCAGGCTGGAGTGCAGTGGCACGATCTTGGCTTACTGCAACCTCTGCC 3552
Query 69 TCTCGAGGTCAAGCGATTCTCCTGCCTCGGCCTCCGGAGTAGCTGGGATTACAGGCACACGCAACCATGCCCGG 142
|||.|.|.|||||.||||||..||||||.||||||.||||||||||||||||||||||..||.||||.||||.|
Sbjct 3553 TCTGGGGTTCAAGTGATTCTTGTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCACCTGCCACCACGCCCAG 3626
Query 143 CTAA-----TTTTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTG 211
|||| ||||||||||||||||.|||||||||||||||..|||||||||.|||||||||||.||||.||||
Sbjct 3627 CTAATTTTTTTTTTTTTGTATTTTTTGTAGAGATGGGGTTTTGCCATGTTGGTCAGGCTGGTCTTGAACCCCTG 3700
Query 212 ACCTCAAG------------------------------------------------------------------ 219
||||||||
Sbjct 3701 ACCTCAAGTGATCCTCCCGCCTTGGCCTCCCAGAGTGCTGGGATTACAGACATGAGCCACTGCGCCTGGCCTCA 3774
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3775 ATGAGTAAATGTTTTGCTAAAAAATTTCCCACACTGCCTCAGCATAAAGCCTTACTTCAGTGTCAACTTTTGGT 3848
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3849 GCTGAACAAGGCACTCCTTGGCTGAAACCTTCCCACATTCTATGCATTCATAAGGCTTTTGCAGGGTGAACTTT 3922
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3923 CTGGTGCTGAGCAAGGTTAGAGGGACAGCCAAAGGCTCTCTCACATTGTCCCCACTCATAAAACCTTTCTGTGT 3996
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3997 TGTGAACTTTCTGGTGCCCTGCAAGGTGGACATTTCTGCTGTAGGATTTCCCACACCTGCTGTACACATAAGGG 4070
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4071 CTTGCTCCAGAGTGAAGTCTCTGGTGGTGAACAAGGCTGGAGCTCTGGCTAAAGGATTTCCCACATTCTTTGCA 4144
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4145 CTCATAAGGACTTTCTCCAATATGGGTTCTTTGATGTTGACCAAGTCCATATTTGGAGCTCAAAGATTTCTTAC 4218
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4219 GCAATGTAAATTAGTATAACCACTATGGAGAACAGTTTGGAGGTTCCTCAAAAAACTAAAAATAGAGCTACCAT 4292
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4293 ATGACCCATCAATCTGACTTCTAGTTATATACCCCAAAGAAAAGAAATCAGTACATTGAAGAGATATCTGCCCT 4366
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4367 CCCATCTTTGTTGCAGCACTATTCACAATAGCCAAGATTTGGAAGTAACCCAAATGTCCATCAACAGACAAATG 4440
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4441 GATAAAGAAAATGTGGTGCATATACACAATGGAGTAGTATTCAGCCATAAAAAAGAATGAGATCTTGTCATCTG 4514
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4515 CAACAACATGGATGGAACTGGAGGTCCTTAAGGTTAAGCAAAATAATCCAGGCACAGAAAGAAAACATTGCATG 4588
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4589 TTCTCATCTATTTGTGAGAACTAAAAATTAAAACAATTGAACTCATGGAGATAGAGAGTAGAAGGATGGTTACC 4662
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4663 AGAGGCTGGGAAGGGTAGTGAGGGCGAGTGAGGGGGAAGTGGGGTGTTTAATGTGTCCAAAAAATGGTCAGAAA 4736
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4737 CAATGAATAAAGTCTAATATATGACAGCAAAAGAGTGTGACTATAGTCAATAATAATCGAATGGTACATTTAAA 4810
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4811 AATAACTAAAAGTGTATATTTGGATTGTTTGTAACATAAAGGATAAATGCTTGAGGTGATGGATACCCCATTTA 4884
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4885 CCCTGATGTGATTGTTACACATTGTATGCCTGTATCAAAGTATCCATATACCCCATGAATAAATGTATATACCT 4958
Query 220 -------------------------------------------------------- 219
Sbjct 4959 ACTATGCACCTACAAAAATTAAAATAATAAAAAAAAGGATTCCCCATATTTGCTAC 5014
