Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_12783
- Subject:
- XR_936795.3
- Aligned Length:
- 5632
- Identities:
- 189
- Gaps:
- 5414
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TTGGGAAACCTTTGAGCTAAGATTGGACTGAAATGGCCTCAGGTGCTCTAATCAAATTGAGACCTGGTCCAATC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CCTGTGGGCCCCTAAACCAAAGGTGAATAAGGTGCCTGCCTAGCAGGAGGTTGTGACCTCCAGGCTGATGGTGG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GGTGAGAGCTGGGAGTCTGGATGGAGCAGATGTAGGCAGACAACAGGATGAGATTTGAAGGCCACAGCTAAGAA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TGACATTGAAGATCAAGACCTGTGCTGTCCTCCATGGCAGTCACTGGGCACCTGGGGTTATTTCAGTTTATATC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 AATGAAAACTAAATAGCTTTAAAAATTCAGTTCCTCAGTCACGCTAGCCACATTTTGAGTGCTCCATAGTCACA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TGTGGCTAGCGGCTGCTATATTGGACAGTGCAGACACAGAATATTTTCACCATGTGCAGAAAGTTGTACTCAAC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 AACACGAGACAGACATATAAGGTTTTGAGTCCAGAAAACATCAAGTTGGAGAGAGGCAGTAGCAAGAAAAAAAG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 AGCAACAATAAGGGGGACTGTGACCAAGAGGTCCCCACTCATTCATTCCATCCTTCCTTCATTCATCTCTTCAC 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CTCACATTGATTGAGCTCCTATCAGGCACCCTCTATGACTGCAGGCTCCAGGGAAACACAAGAGAATTACACAG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 ATGTAGCCTCAGACCACACAGAGCTCACATTTAGTCTGAGGAGTCAGACCCTAAGGGAGGTAAATAAGTCACTA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 AACAAGACAATTCCAGAAAATAATAAATGCCAACATGAAAAGAGAGCAGGTAATAGGACACAGCGTCTTTGGTG 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 GGAGGATCAGGCCTCAAGTTTGGGGAGACGTGTCATCTTTGGGCAGCTAAAAACTACAGGGCTCAGAAAACCTC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 AGACATACAGAAAGGAGAGGAATGCACTGCTCTATAGCCCACTCCCTGGAAGGCTGGGAAGCCCTGGTCCAGGG 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 AAAGCACAGGGTTCTAGGAATTGGGAACGGGACCCAACCACAAGGACAGGAAGTGGACAGGGGCCTCCAGGAAG 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 CAGAGAAGAAACGAAGCACAGAAGTGGCCATGGGGCCATCATGGAGTCTGTTTCACGGACAGAAACACAAAGGG 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 GCTGTTAGGAACAGCCACCTCTGGCCAGCCCCGCCTGTGATTGTGACCTGACAACTCGTGGTTTGTGAAGGTTG 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 TTTGTTTCAGAGGCATTTCGCCTCTCTGCTTTTGGAACCTCCACGAGTGGACTTTTGTCTTGGGGCTCACAGTA 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 TTTTACCCCCTTCAGGGAGGTGGCTGGTTGTAGTTTAGCAAAACAGCCACTGACATCGCTGCTCCTTCAGCCTC 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 TGCAGACAGAGCTGCAAGATCCTCGAGGCCTTTTTAATCCCCAGAAACAAGGTGTTAAAACAGACCAAAATGTG 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 TTCTCCCGCCCAGAAGCAAGCAAAGCCAACCCCAGCTGCAGTTCCCTGACAGTCCAGTGAATTCAGCCAAAGGA 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 AATGGCCCCACATGGAGGGCAAGTGACAGAAGACCTGATGACTCCGGTGGCTCAGCGGAGAGTGCATTAATAGG 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 CTTGACCACTTCTGCTCGATCTTCAGGCAAGCTGGGTCTGACCCCTGGACACTGTCCCCTGGAGCCCCTGGCCT 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 CCACGTGTCCACCCACTGCCATGGTCATGGCTCCTCAGCAGGAGGAGGCCCAGCAGCCTCCAGGTGCCCCTGCC 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 TGGTGCTAGCTGCCCACCGAAGCTCTAGCCTCACACTCTCAGGTTCAAATCCAGCGACAAGAGCGGATCCCACA 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 AAGGCCACGAGAGTCACCCTAAACGGTCAGCTTAGGTCCTTCGTTCACTGAGCCCATCGCTGTCCAGGGCAAGT 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 GGTGCTGGCTGGGCTAGGTCCAGCTCCCGTGTCCACCCTGGGACCTGAGGTTCAGGGTCAGCTCACCCTAGACA 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 CATGGATCGAGTGGGGAGGGTGAATCCTCAAATGCTAATCAGGTTCTGTTGTACAGAAGGGGAAGCGGAGGCAG 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 GAGGATGCAGCAAGACCTGTTCCCTCCTCTAACGGCACTCATAGGACAGCCCAGCCACACATTCAAAGAATCTT 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 GAAGGAATAGGATGGTTGGTATGGTTGGTGTGGAAGAAGGTTCATAAATTCTGGATTTAGCTTTGTGGGATTCA 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 GCTGACCTGAAATTTATACCTGTGCAGGTAGGTGGTTGCTGGGTAGGGTGACCACTACTGTCTCTCTCCATCAC 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 CCAGGGCTGTTTTCAGCTCAAAGCCACAGAAGCCCAGGCATGGTGGCATCTCCGGGGGAAGTTGCCTTATTCCA 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 GATTCACAGGTCCGGGGCGAAGGGGCCAGGCAGGGCAGGTGTGGGGCGGCAGGATATCGCCCTGGGCCTGGCTC 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 CTTCTGCCTTTCTGCCACCATCTTCAGCGGTGCCATTACCTCGAGGCCTTCTGTGGTTGCTGGAGCTGCCACGC 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 TCGGCCTCCTGTCTGCCTCCAGATGGGAGAGGAGGAAGGAGGAGGTGAGAGCAGGAAAGAGCTTACATAAAAGA 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 CCACATTTTCCCAGAATCCCCAGCAGCTGCCTGTTCTCCCCCTCCACTGGGCTAGAGCTGTGTCACACAGGCTG 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 AGCGGCCAGGAAGCTGGGCACCATCCAGGGAGTGTGTGATCGTCGGGGTCCTGTTGATTCCTGCTTTTGAGTAA 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 TGAAGGTGACCAAACCACATGACCCTGTCTGCAAAGATTCCACCTGGACTCCCAGTTCCTCCAAGGAACCGTCA 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 TGTGGTTCAAATCCAATGAAATTCTCTAAATCTCCACCCTCCTCAGGGTGCAGAGTTGGCTGCTTCTCTGTGCC 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 CCCTGCTGATCACGGCAACCCCTGGGTGCCTCGGCCTGCGAAGCCCCAGCTGTCCTCCGTCTGCAGACAAGCCG 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 AGGTATGAAAGCCTCCTCGCTGGCCCAGGAGCCTGTCATTGTCCTCCAGCAGCTCTAGCCTGGATGCGGTCCCA 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 GAGATAAATCATATCTCTTTAAAAAGCCACAGTGGCCCATTATTTCTGCTTGAAAATACCCCTGGCTCTCTGCT 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 GGTGAGCTGGTTGACAGGCCCCGGCTGTTGTGCTCAGTGCTGCAAAGAGTCACGTCAGTCTGTCGACTTGTGTA 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 GTGAGCAAGCTGGTAGCTTCAGATGGTATGCACATGAAATCCCGTCCTGGCATCCAGGACTTGGCTGGGGGTTG 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 CAGAGAGAACCACATCTGCAAAAGAGTTGGTATTTTACAGTCCCAGCCTCACGTCCTTGTGAAATGCCCTGTTC 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 ATACTGGGCTACAGGGGCGGGAGCAAAAATGATACAATGACAATTCCTGGGCTGTGTTCTGCAATATTCTACAA 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 CACTTCCACAAGAAAACTCCAATCTTTAAAAATAGACTGAGCACAATTAAACAATCACTATAGATATTTCTTTT 3404
Query 1 ------------------ATGGAGTCTCATTCTGTCGCCCAGACTGGAGTGAAGTGGCATGATCTCGGCTCACT 56
|||||||||||.||||||||||||.||||||||.||||||..||||||.|||||||
Sbjct 3405 CTTTTTTTTTTTTTTGAGATGGAGTCTCACTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCGATCTCTGCTCACT 3478
Query 57 GCAACCTCTGCCTCTCGAGGTCAAGCGATTCTCCTGCCTCGGCCTCCGGAGTAGCTGGGATTACAGGCACACGC 130
||||.|||.|||||.||.|.|||.||.|||||||||||||.|||.||.||||||||||||.|||||||.|.|.|
Sbjct 3479 GCAAGCTCCGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCACCCGAGTAGCTGGGACTACAGGCGCCCAC 3552
Query 131 AACCATGCCCGGCTAATTTTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGA 204
.||||.|||||||||| |||||||||||||||||||||||.||||||||||..||||.||||||.|||||||||
Sbjct 3553 CACCACGCCCGGCTAA-TTTTTTTGTATTTTTAGTAGAGACGGGGTTTCACTGTGTTAGCCAGGATGGTCTCGA 3625
Query 205 ACTCCTGACCTCAAG----------------------------------------------------------- 219
.||||||||||||.|
Sbjct 3626 TCTCCTGACCTCATGATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCGCCGCGCCCGG 3699
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3700 CCCACTATAGATATTTCAACCAGAGGAATATAGTGAATCATGATCTACCCATCACCCAGGTTCAACAGCTCTCA 3773
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3774 GGGTTTGCCCCCTTCCTTCCAGCTCTTTCCCCTCTTTCTGCCAAATTATTTTAAAGCAAATCCCAGACCTCAAG 3847
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3848 TGGACATTTTCTAACAAAGTTGCAATATCCTAAACATCTCCGATGTTCAAATTCCCCCAGGTGTTGCTCAGATA 3921
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3922 TTTTTTTCTGGTTGCTTTTCCAGAAATTCAACAAGGACCACACGGCATTTGGTTGTTAAGTTTCTAACTTCTCT 3995
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3996 TTGGTTGACAGTGATCCCCTCTCCTTCATTTTACTTTTAATGCCACTGCTTGTTGAATTCCTGGGAGCAGTTGC 4069
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4070 TCTGTGGGATGCCCCACATCCAGGATTTGTCAGTCTGCTGCCTCATGGTGTCATTTCAATTCCTTCTGCAGATG 4143
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4144 GATGCCGCTGGACATCCTTGCCAAGGTGTGTCAGTTTCAATTAAACCCAGAATGGGGTGTTGGAGCTCAAAGGA 4217
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4218 GCCATTGTCAAGCCATTGCCTGAGCAAAGGAAGGTGTTTTTTTTTTTTTTTCTTCCTGTCGCCCAGGCTGGAGT 4291
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4292 GCAGTGGTATGATCTCGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCAATTCTCCTGCCTCAGCCTTTTGA 4365
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4366 GTAGCTGGGATTACAGGCATGTGCCACCATGCTCAGCTAATTTTTGTATTTTTTTAGTAGAGATGGGGTTTCAC 4439
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4440 CATGTTGGTCAGGCTGGTCTCAAACTCCTGACCTCGTGATTTGCCTGCCGTGGCCTCCCAAAGTGCTGGGATTG 4513
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4514 CAGGTGTGAGCCACCGTGCCTGGCCTGTGTTTTAAGATGATTTCCTGGATTCTTGTTGAACTACCAAGGCAGGT 4587
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4588 GTTTGCTCCCAGGCTTCACCATCAAATTCCCTAACGGCTGTGTTCTGGGTTGAGTCACTTTAATGAGCTGCCCT 4661
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4662 GCCGTTCCCAGGTGAGATGTCAATTAGAATTTGCAATCCCAATACCAGGGCCACGTTCTCACCACCTGAAGAAA 4735
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4736 CCCTAACAGTCGAGACAGAATGAATGAAGGACAGATCAATGGGCTGGGTCTGTACAAGCACACCCATAGGGCAA 4809
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4810 CCCAAGGGCACGTTATTTTGGTCTGAGTTATCTCCTGAGTCATGGACATGAGTCTGGGAAGGTCAAGGTTCGCC 4883
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4884 TGTTATCGTTATGGAAAGACACTGACCTTATGTGCTGGGCTGTGCCGTGGGCGCCTTCTTATTACATCCTCAGA 4957
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4958 ACAGCCTCAGGATGGCTCATGATTCCCTCAATCACAGATGAGGACCTGAGGCTCAGGAAAGATACATTTGCATC 5031
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5032 TTGTAGGTCTGGGTTCAGCCTGGACCCACGGTTTCCATGCTTGCCCTGACCCTTCATTCCCTCCATTCCCTCCC 5105
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5106 AGCAGCCAGTCAGTGGCTGTCCAGACATGTGCACCAGCTGTGCTGCACCTCCACCATAAAAACTCCTCCAATCA 5179
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5180 CTTCCCACTGCTCCCCATGTGAACCCCAAGGGGGCTCACCCTGTCCCAGGAGGTTCTGCCTGATCCACACCCCC 5253
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5254 CACCCCTTCCTGCATCCCTGCAACCTGCTCTCCCTACGTCCTCAGTCCTGGCGTCCTCTCTGTTCCCTGGACTT 5327
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5328 GTCCAGCCCAGTCCTACCTCCAGGCCTTGGCACCTGCTGTGCCCTTGACCTGGCGTGATCTCCTGATGGCCGTT 5401
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5402 ACTGGGCTGGAAACTTCTCAGTGCTCAGCTTGAGCTCAAAGCCCACCTCTTCAGAGAGGCTGTCCCCATCCACT 5475
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5476 GTGGCCTTTCTTCCCTTTGCTCTTTCAATTCCCAGTTTATTTCCTGTAGAGCAGTTTCACCCTCTTCACCAATC 5549
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5550 TTGTTTATTTCCTTGTTTATTGTGCCTCCTTTACCAGAACGTTCACCCTCTGAGGGCCTGGGCCAGGTCTGTCT 5623
Query 220 -------- 219
Sbjct 5624 GTTCACAG 5631
