Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_12783
Subject:
XR_936795.3
Aligned Length:
5632
Identities:
189
Gaps:
5414

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  TTGGGAAACCTTTGAGCTAAGATTGGACTGAAATGGCCTCAGGTGCTCTAATCAAATTGAGACCTGGTCCAATC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CCTGTGGGCCCCTAAACCAAAGGTGAATAAGGTGCCTGCCTAGCAGGAGGTTGTGACCTCCAGGCTGATGGTGG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GGTGAGAGCTGGGAGTCTGGATGGAGCAGATGTAGGCAGACAACAGGATGAGATTTGAAGGCCACAGCTAAGAA  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  TGACATTGAAGATCAAGACCTGTGCTGTCCTCCATGGCAGTCACTGGGCACCTGGGGTTATTTCAGTTTATATC  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  AATGAAAACTAAATAGCTTTAAAAATTCAGTTCCTCAGTCACGCTAGCCACATTTTGAGTGCTCCATAGTCACA  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  TGTGGCTAGCGGCTGCTATATTGGACAGTGCAGACACAGAATATTTTCACCATGTGCAGAAAGTTGTACTCAAC  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  AACACGAGACAGACATATAAGGTTTTGAGTCCAGAAAACATCAAGTTGGAGAGAGGCAGTAGCAAGAAAAAAAG  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  AGCAACAATAAGGGGGACTGTGACCAAGAGGTCCCCACTCATTCATTCCATCCTTCCTTCATTCATCTCTTCAC  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  CTCACATTGATTGAGCTCCTATCAGGCACCCTCTATGACTGCAGGCTCCAGGGAAACACAAGAGAATTACACAG  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  ATGTAGCCTCAGACCACACAGAGCTCACATTTAGTCTGAGGAGTCAGACCCTAAGGGAGGTAAATAAGTCACTA  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  AACAAGACAATTCCAGAAAATAATAAATGCCAACATGAAAAGAGAGCAGGTAATAGGACACAGCGTCTTTGGTG  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  GGAGGATCAGGCCTCAAGTTTGGGGAGACGTGTCATCTTTGGGCAGCTAAAAACTACAGGGCTCAGAAAACCTC  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  AGACATACAGAAAGGAGAGGAATGCACTGCTCTATAGCCCACTCCCTGGAAGGCTGGGAAGCCCTGGTCCAGGG  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  AAAGCACAGGGTTCTAGGAATTGGGAACGGGACCCAACCACAAGGACAGGAAGTGGACAGGGGCCTCCAGGAAG  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  CAGAGAAGAAACGAAGCACAGAAGTGGCCATGGGGCCATCATGGAGTCTGTTTCACGGACAGAAACACAAAGGG  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  GCTGTTAGGAACAGCCACCTCTGGCCAGCCCCGCCTGTGATTGTGACCTGACAACTCGTGGTTTGTGAAGGTTG  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  TTTGTTTCAGAGGCATTTCGCCTCTCTGCTTTTGGAACCTCCACGAGTGGACTTTTGTCTTGGGGCTCACAGTA  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  TTTTACCCCCTTCAGGGAGGTGGCTGGTTGTAGTTTAGCAAAACAGCCACTGACATCGCTGCTCCTTCAGCCTC  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  TGCAGACAGAGCTGCAAGATCCTCGAGGCCTTTTTAATCCCCAGAAACAAGGTGTTAAAACAGACCAAAATGTG  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  TTCTCCCGCCCAGAAGCAAGCAAAGCCAACCCCAGCTGCAGTTCCCTGACAGTCCAGTGAATTCAGCCAAAGGA  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  AATGGCCCCACATGGAGGGCAAGTGACAGAAGACCTGATGACTCCGGTGGCTCAGCGGAGAGTGCATTAATAGG  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  CTTGACCACTTCTGCTCGATCTTCAGGCAAGCTGGGTCTGACCCCTGGACACTGTCCCCTGGAGCCCCTGGCCT  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  CCACGTGTCCACCCACTGCCATGGTCATGGCTCCTCAGCAGGAGGAGGCCCAGCAGCCTCCAGGTGCCCCTGCC  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  TGGTGCTAGCTGCCCACCGAAGCTCTAGCCTCACACTCTCAGGTTCAAATCCAGCGACAAGAGCGGATCCCACA  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  AAGGCCACGAGAGTCACCCTAAACGGTCAGCTTAGGTCCTTCGTTCACTGAGCCCATCGCTGTCCAGGGCAAGT  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  GGTGCTGGCTGGGCTAGGTCCAGCTCCCGTGTCCACCCTGGGACCTGAGGTTCAGGGTCAGCTCACCCTAGACA  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  CATGGATCGAGTGGGGAGGGTGAATCCTCAAATGCTAATCAGGTTCTGTTGTACAGAAGGGGAAGCGGAGGCAG  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  GAGGATGCAGCAAGACCTGTTCCCTCCTCTAACGGCACTCATAGGACAGCCCAGCCACACATTCAAAGAATCTT  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  GAAGGAATAGGATGGTTGGTATGGTTGGTGTGGAAGAAGGTTCATAAATTCTGGATTTAGCTTTGTGGGATTCA  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  GCTGACCTGAAATTTATACCTGTGCAGGTAGGTGGTTGCTGGGTAGGGTGACCACTACTGTCTCTCTCCATCAC  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  CCAGGGCTGTTTTCAGCTCAAAGCCACAGAAGCCCAGGCATGGTGGCATCTCCGGGGGAAGTTGCCTTATTCCA  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  GATTCACAGGTCCGGGGCGAAGGGGCCAGGCAGGGCAGGTGTGGGGCGGCAGGATATCGCCCTGGGCCTGGCTC  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  CTTCTGCCTTTCTGCCACCATCTTCAGCGGTGCCATTACCTCGAGGCCTTCTGTGGTTGCTGGAGCTGCCACGC  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  TCGGCCTCCTGTCTGCCTCCAGATGGGAGAGGAGGAAGGAGGAGGTGAGAGCAGGAAAGAGCTTACATAAAAGA  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  CCACATTTTCCCAGAATCCCCAGCAGCTGCCTGTTCTCCCCCTCCACTGGGCTAGAGCTGTGTCACACAGGCTG  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  AGCGGCCAGGAAGCTGGGCACCATCCAGGGAGTGTGTGATCGTCGGGGTCCTGTTGATTCCTGCTTTTGAGTAA  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  TGAAGGTGACCAAACCACATGACCCTGTCTGCAAAGATTCCACCTGGACTCCCAGTTCCTCCAAGGAACCGTCA  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  TGTGGTTCAAATCCAATGAAATTCTCTAAATCTCCACCCTCCTCAGGGTGCAGAGTTGGCTGCTTCTCTGTGCC  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  CCCTGCTGATCACGGCAACCCCTGGGTGCCTCGGCCTGCGAAGCCCCAGCTGTCCTCCGTCTGCAGACAAGCCG  2886

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2887  AGGTATGAAAGCCTCCTCGCTGGCCCAGGAGCCTGTCATTGTCCTCCAGCAGCTCTAGCCTGGATGCGGTCCCA  2960

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2961  GAGATAAATCATATCTCTTTAAAAAGCCACAGTGGCCCATTATTTCTGCTTGAAAATACCCCTGGCTCTCTGCT  3034

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3035  GGTGAGCTGGTTGACAGGCCCCGGCTGTTGTGCTCAGTGCTGCAAAGAGTCACGTCAGTCTGTCGACTTGTGTA  3108

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3109  GTGAGCAAGCTGGTAGCTTCAGATGGTATGCACATGAAATCCCGTCCTGGCATCCAGGACTTGGCTGGGGGTTG  3182

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3183  CAGAGAGAACCACATCTGCAAAAGAGTTGGTATTTTACAGTCCCAGCCTCACGTCCTTGTGAAATGCCCTGTTC  3256

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3257  ATACTGGGCTACAGGGGCGGGAGCAAAAATGATACAATGACAATTCCTGGGCTGTGTTCTGCAATATTCTACAA  3330

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3331  CACTTCCACAAGAAAACTCCAATCTTTAAAAATAGACTGAGCACAATTAAACAATCACTATAGATATTTCTTTT  3404

Query    1  ------------------ATGGAGTCTCATTCTGTCGCCCAGACTGGAGTGAAGTGGCATGATCTCGGCTCACT  56
                              |||||||||||.||||||||||||.||||||||.||||||..||||||.|||||||
Sbjct 3405  CTTTTTTTTTTTTTTGAGATGGAGTCTCACTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCGATCTCTGCTCACT  3478

Query   57  GCAACCTCTGCCTCTCGAGGTCAAGCGATTCTCCTGCCTCGGCCTCCGGAGTAGCTGGGATTACAGGCACACGC  130
            ||||.|||.|||||.||.|.|||.||.|||||||||||||.|||.||.||||||||||||.|||||||.|.|.|
Sbjct 3479  GCAAGCTCCGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCACCCGAGTAGCTGGGACTACAGGCGCCCAC  3552

Query  131  AACCATGCCCGGCTAATTTTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGA  204
            .||||.|||||||||| |||||||||||||||||||||||.||||||||||..||||.||||||.|||||||||
Sbjct 3553  CACCACGCCCGGCTAA-TTTTTTTGTATTTTTAGTAGAGACGGGGTTTCACTGTGTTAGCCAGGATGGTCTCGA  3625

Query  205  ACTCCTGACCTCAAG-----------------------------------------------------------  219
            .||||||||||||.|                                                           
Sbjct 3626  TCTCCTGACCTCATGATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCGCCGCGCCCGG  3699

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3700  CCCACTATAGATATTTCAACCAGAGGAATATAGTGAATCATGATCTACCCATCACCCAGGTTCAACAGCTCTCA  3773

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3774  GGGTTTGCCCCCTTCCTTCCAGCTCTTTCCCCTCTTTCTGCCAAATTATTTTAAAGCAAATCCCAGACCTCAAG  3847

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3848  TGGACATTTTCTAACAAAGTTGCAATATCCTAAACATCTCCGATGTTCAAATTCCCCCAGGTGTTGCTCAGATA  3921

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3922  TTTTTTTCTGGTTGCTTTTCCAGAAATTCAACAAGGACCACACGGCATTTGGTTGTTAAGTTTCTAACTTCTCT  3995

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3996  TTGGTTGACAGTGATCCCCTCTCCTTCATTTTACTTTTAATGCCACTGCTTGTTGAATTCCTGGGAGCAGTTGC  4069

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4070  TCTGTGGGATGCCCCACATCCAGGATTTGTCAGTCTGCTGCCTCATGGTGTCATTTCAATTCCTTCTGCAGATG  4143

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4144  GATGCCGCTGGACATCCTTGCCAAGGTGTGTCAGTTTCAATTAAACCCAGAATGGGGTGTTGGAGCTCAAAGGA  4217

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4218  GCCATTGTCAAGCCATTGCCTGAGCAAAGGAAGGTGTTTTTTTTTTTTTTTCTTCCTGTCGCCCAGGCTGGAGT  4291

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4292  GCAGTGGTATGATCTCGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCAATTCTCCTGCCTCAGCCTTTTGA  4365

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4366  GTAGCTGGGATTACAGGCATGTGCCACCATGCTCAGCTAATTTTTGTATTTTTTTAGTAGAGATGGGGTTTCAC  4439

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4440  CATGTTGGTCAGGCTGGTCTCAAACTCCTGACCTCGTGATTTGCCTGCCGTGGCCTCCCAAAGTGCTGGGATTG  4513

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4514  CAGGTGTGAGCCACCGTGCCTGGCCTGTGTTTTAAGATGATTTCCTGGATTCTTGTTGAACTACCAAGGCAGGT  4587

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4588  GTTTGCTCCCAGGCTTCACCATCAAATTCCCTAACGGCTGTGTTCTGGGTTGAGTCACTTTAATGAGCTGCCCT  4661

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4662  GCCGTTCCCAGGTGAGATGTCAATTAGAATTTGCAATCCCAATACCAGGGCCACGTTCTCACCACCTGAAGAAA  4735

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4736  CCCTAACAGTCGAGACAGAATGAATGAAGGACAGATCAATGGGCTGGGTCTGTACAAGCACACCCATAGGGCAA  4809

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4810  CCCAAGGGCACGTTATTTTGGTCTGAGTTATCTCCTGAGTCATGGACATGAGTCTGGGAAGGTCAAGGTTCGCC  4883

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4884  TGTTATCGTTATGGAAAGACACTGACCTTATGTGCTGGGCTGTGCCGTGGGCGCCTTCTTATTACATCCTCAGA  4957

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4958  ACAGCCTCAGGATGGCTCATGATTCCCTCAATCACAGATGAGGACCTGAGGCTCAGGAAAGATACATTTGCATC  5031

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 5032  TTGTAGGTCTGGGTTCAGCCTGGACCCACGGTTTCCATGCTTGCCCTGACCCTTCATTCCCTCCATTCCCTCCC  5105

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 5106  AGCAGCCAGTCAGTGGCTGTCCAGACATGTGCACCAGCTGTGCTGCACCTCCACCATAAAAACTCCTCCAATCA  5179

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 5180  CTTCCCACTGCTCCCCATGTGAACCCCAAGGGGGCTCACCCTGTCCCAGGAGGTTCTGCCTGATCCACACCCCC  5253

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 5254  CACCCCTTCCTGCATCCCTGCAACCTGCTCTCCCTACGTCCTCAGTCCTGGCGTCCTCTCTGTTCCCTGGACTT  5327

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 5328  GTCCAGCCCAGTCCTACCTCCAGGCCTTGGCACCTGCTGTGCCCTTGACCTGGCGTGATCTCCTGATGGCCGTT  5401

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 5402  ACTGGGCTGGAAACTTCTCAGTGCTCAGCTTGAGCTCAAAGCCCACCTCTTCAGAGAGGCTGTCCCCATCCACT  5475

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 5476  GTGGCCTTTCTTCCCTTTGCTCTTTCAATTCCCAGTTTATTTCCTGTAGAGCAGTTTCACCCTCTTCACCAATC  5549

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 5550  TTGTTTATTTCCTTGTTTATTGTGCCTCCTTTACCAGAACGTTCACCCTCTGAGGGCCTGGGCCAGGTCTGTCT  5623

Query  220  --------  219
                    
Sbjct 5624  GTTCACAG  5631

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