Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_12783
- Subject:
- XR_938936.2
- Aligned Length:
- 4176
- Identities:
- 190
- Gaps:
- 3960
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GTTCCGGACCACCTCGCAGCGCCGCGTCCTTAGGGGCGGGCTCGGGGGGCACCACCCTCGAGGGGCGGAACCCG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TGGGGGCGGTGGCGTGGATCCGGAGGTACCTGGTTTCTGAGCAAGATGCTTGCATGAAAGATTCAATCTAAGGC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CAATGCAAAAATATTGTGAAAGCAGCAGGATCAGCTAGCCTTCCAGTTGGCTTCTTAAATGCTGCATTGAAAGG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 ATGAAACAGAACGGATGTGAACAAGAGTTCCCTGAGAAAGGACAGCTCTTAGAGAGATAGGATAATTACTGGAC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TCAAGAAGATACCAAATCATGGTGTGCATTTCTGCGTTGTGTTTGGAAGAGGAACTAGGATTGTTATGAAAAGG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 AAGGATGTGTTCAACTTAGAAGAATTAAACCTCAACCATCTGTCTCTTCCAAATGGCATTCTTGATTCTAAAAA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TCTTAAGTAGAGTGTAAAGTTATTGTTGGATACTGTAGTAGCCAGGCTAAGCTGAGCTATTCAGTGGAACAGAT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 AAACCCGAAAATCTCAGTGGCTTAACACAACAAGATTTATTTCTTTTTAGTATCACAATCTGATGTAGATTGGG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 TTGGTCTCCTGCTTGGCTTTCCATCAAGTGACAGCTCAGGGATCCAAGTTGCTTTTATTTGGAAACTGTCATCT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TGAGAGCATTTTGTTTCCAGCTGTATGGACAGGAGATCCAGAAGGTGTGGAGAAGTGCATCCTTCCTGGATCAC 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 AAATGATACATCACTTTAGCTCACATTCCATTGTTAAGAATTAGTGACATGATCCCACTGGGATTCATGGGGTC 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 TGGGATATGGAACACTTGGATATTTGGCGAGCATGAACAATCTTTGCCATAGAAACATTGCCTCTATAATGTTA 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 TTCTATATCCCTTATCTTCTCATGGTAGATTTCACATAGGATTAGTATCAGGAAAACGTTTTTCTCTCCTAAAA 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 TGTTGGTATTCTTCTTTTTTCCCTCTGGAGTCAGGAACTTTAGATTTAATATTAATGACTATCTAATCTGAGAT 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 TTTTAGTAGCATCATGTATCCTATTTCTCTATTGTGTTTCTGGAATAGTTTTATTATTGTATTTTAACTGACTA 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 ACTGTATTTGATTTTTTAAAAATTGCCATAATCCTTTCTAGTTTTAGCTGTTCATTTAATGAACACTTACCAAT 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 AGCAGATGTGTTGATAAGGATGAAGGATGTTTTTGGCTGCAACAGAAAAACTAATAAGTGGTTTAAGCAATAAG 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 AGTTTAATTATCTGACACAAGAAGTCTGGCAGTTTCAGGATAGGTTAATTCAATGGTGTGATATCATAGAGGAT 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 CATGTATACTCACTTTTTCTGTTTTATAAACTTCAGCGTTTGATGGTGTTCCCCCTTCCTGTCACATACAGGTT 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 AGTAGTTCCAAGTGTTGCTTGTCATGGTAGACCCTAGTCAGGCCTGGGTCTTGTGACGCAGGAGACAAATATGC 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 TCATAGACTTGTCGTTATGACATGGCTGCAGTGTGGTGCCACCAGGCCTGCATCACGCCTACTCATCATATAAT 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 ATTAGATTATATAGTCTGTGGAAAATGTTGCAAAATGATACTGGTGGCAGGGTCAGAAATTGTATTCAGACTTT 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 GATGTTAGATCCAGGCAAATGGCTTGTTGAAAAGAGATTTCTCTTTAGAGAGAAATCATGTTGGTGTACCAGGT 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 GACATGTTTGGTTGGGGGTGGGGTGGGGGGACTGCTTGGATAGCATGGTAGTGATAGAAGTGTGATAAGCTGGA 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 TGCTGGATATAGTTAGAAGGATTTACTGATCAATTGGATGTGAGGAGTGATATAGAGAGAGATGTTGGGAATGA 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 CTCCAAGTTTTGGCCTGAGTGATGGGAAAAATTGAGTTGCTATTTATCAAGATAGGGAAGACCAATGAGTTTGG 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 TGCTGTCATAAAATAAAATGTATCAGATTTTTAGCAACAACTGGAAGTAAGACATTGCAAGGAGTCTGGGCTGG 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 GCTGAGATAGAGTTCAGATGGGGAGCTGGAATCAGACTGCTGCCCCAGGTCCTGGGACCCTGCCATGCAGAAAA 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 GACACCTGGCATGGGCAAGGACTCCAGTATGCCGGAGCCTCTTCCTCCTTTCTCAGGCCAAATTTGTGTCCTTG 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 CAAAATTTGGCTACAAATGTTAAATTTACAAAGACCTCTGATACCCATTATCCCACCCAACTCTCTGGAGAGCC 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 TTTGTAATGTGGTAACTGCTCTTATGCACATAGCCAAAGACTTGAAAACAGTCTCAGAAAAGCTGTAATTTCTA 2294
Query 1 ------------------------------------------------------------------AT------ 2
||
Sbjct 2295 CCTTCATTCATTTAAAGAAAACTTACTAAACACTTATTTATTTATTTTTATTTTATTTATTTATTTATTTTTGA 2368
Query 3 GG---AGTCTCATTCTGTCGCCCAGACTGGAGTGAAGTGGCATGATCTCGGCTCACTGCAACCTCTGCCTCTCG 73
|| |||||||.|.|||.||||||.||||.|||||||||||.|||||||||||||||||||||||||||||||
Sbjct 2369 GGCACAGTCTCAGTTTGTTGCCCAGGCTGGGGTGAAGTGGCACGATCTCGGCTCACTGCAACCTCTGCCTCTCG 2442
Query 74 AGGTCAAGCGATTCTCCTGCCTCGGCCTCCGGAGTAGCTGGGATTACAGGCACACGCAACCATGCCCGGCTAAT 147
.|.||||||||||||||||||||.||||||..|||||||||||.|||||.||..|.|.||||..||||.|.||
Sbjct 2443 GGTTCAAGCGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGTCATGCACCACCACCCCCGACAAA- 2515
Query 148 TTTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAG-- 219
||||||||.||||.||.||||..|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2516 --TTTTTGTACTTTTGGTGGAGACAGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAGGG 2587
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2588 ACCTGACTGCCTCTGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACTGTGCCTGGTCCCAAACATCTATT 2661
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2662 AGGTACTTGCTGTATGTGGTGAAATAAACCCCAGCTCTCCTGATTCAAGGTTAGTGTTCTTTTCACAAATCTAC 2735
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2736 TTCAATACATCAAATCCTACTTCTCTTTCTTTCTATATTTAACTCATAAATATTCCTCTTCTGTCATTTGTGGT 2809
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2810 TTTGAAATGTCTGCAAACTCATGGATACTATTCACTTCTAATGAATAGAATAAAGCAGAAGTGATGGAATATAA 2883
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2884 CTTCAGAGGCCATTTCATGAAAGCCACTGTGGCTTCCTACTTGTTCTCTTGCTCTCTCTCTTAGAACACTTGCT 2957
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2958 CTGGGGAAAGCCAGCTGCCATATTGTGAGCAGACCTATGAAAAGGCCCACTTGGTGAAGAACTGAGGCCTCTGG 3031
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3032 CTGATGGACACATGGGTGACCTTGCAATCAAGTCTTCTGGCTTCAACCAAGCCTTCAGCTGAGACTGCAGCCTC 3105
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3106 ATGAAAGATCCTGAGCTAGAAGCATCCTGCCATCCTAATAAGCCACTCTTGAATTTCTGACCCTTAAAAATTGT 3179
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3180 GAGATAAGCACCTGTGCTTTTTTTAAGTGTTAGATTTAAAAAACCCTGAAAAAATAAAGAAGAAAAAAGACAAC 3253
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3254 TCATAATCTCACCACATTAAAAAGAATAGCTATAGAAAAATTCCAGTAGTATAAAAAGGAAAAATGGAAATAAC 3327
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3328 TTCCCACCATCCCTGATCTTTAGTTCTTTTTCCCACAGTGACATTTTCTTTCCCAAGAAATGTTCATGCATATG 3401
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3402 CAATATATGTGTAAACCCTTTAAGATGTTCACAAAAGGATCATGTTACACTCATTCGAAAAACTTAATATTATA 3475
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3476 TCTTGAAGGTGTCTTCATATCAGTATATATATATCTATCTTAGTTTGTTAATAGATTTCCCATAATTTAAATGT 3549
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3550 ACCATATTTCTTTTACCAGTCCCCATATATGGACATTTAGGATATTTCCAGTATTCTTTTCTGTTATAAAAATA 3623
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3624 TGGTGATAAACATTTTCATGCTTTTTTGAGTATCTTCAAGTAAAGTCCTATGGGTAGCATTCTGGCATCACGTT 3697
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3698 GTATATGCATTTAAAGTTGATGCTATTCACTTGTTCCACAATCTTTGCTCCGAGTTTACACTGATGAAGCATGA 3771
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3772 GAATGCTATATCCCCACAAACCTGTGCATATTGTTGATAGTAAGCATTGTTTGCTATTTTCTGACTATTCATTT 3845
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3846 TTCTTCTTTTGAGAATTGCCATGCCTAGAAGAGTGCCTGTCTTGTAATATATAAGATAATAACTTGATAGCTAG 3919
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3920 CATTTCTGAGGCTTCTTGTGCCTTTAACGTATATTTACTGTTTTGATACTTACAAAGACCCTATGAAGTACGTA 3993
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3994 CTATTATTATCTGCTTATGGCTGGTGGGAAAACTGAGCTGTACAGAATTTAAACAAACTGTCCCAGGTCACACA 4067
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4068 ACTAGGAAGGGTGGAGCCAGGATGCAAATGATACGGAATTTTAAAAAATGGGTAGTTGAGTGAATGAATAAATG 4141
Query 220 -------------------------------- 219
Sbjct 4142 GATGACCTGTTTACATCCTTTCTCATTTTTAA 4173
