Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_12837
- Subject:
- NR_136700.1
- Aligned Length:
- 3935
- Identities:
- 1400
- Gaps:
- 2534
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AGAGTAGCGGCGTGGCCAGTGACAGCCGGCCCCCGTCACGTGGTCGGGCCCACTCCAATGGGCGGCGCCGGGGC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GACTTGCTGTTCCCGGCGGCCCGTGCGTCGGCGGTGGTTGGGTGGTAAGATGGCGGCTGTGAGTCTGCGGCTCG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GCGACTTGGTGTGGGGGAAACTCGGCCGATATCCTCCTTGGCCAGGAAAGATTGTTAATCCACCAAAGGACTTG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AAGAAACCTCGCGGAAAGAAATGCTTCTTTGTGAAATTTTTTGGAACAGAAGATCATGCCTGGATCAAAGTGGA 296
Query 1 ----------------------------------ATGATAAAAATTAACAAGGGTAAACGATTCCAGCAAGCGG 40
||||||||||||||||||||||||||||||||||||||||
Sbjct 297 ACAGCTGAAGCCATATCATGCTCATAAAGAGGAAATGATAAAAATTAACAAGGGTAAACGATTCCAGCAAGCGG 370
Query 41 TAGATGCTGTCGAAGAGTTCCTCAGGAGAGCCAAAGGGAAAGACCAGACGTCATCCCACAATTCTTCTGATGAC 114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 TAGATGCTGTCGAAGAGTTCCTCAGGAGAGCCAAAGGGAAAGACCAGACGTCATCCCACAATTCTTCTGATGAC 444
Query 115 AAGAATCGACGTAATTCCAGTGAGGAGAGAAGTAGGCCAAACTCAGGTGATGAGAAGCGCAAACTTAGCCTGTC 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 AAGAATCGACGTAATTCCAGTGAGGAGAGAAGTAGGCCAAACTCAGGTGATGAGAAGCGCAAACTTAGCCTGTC 518
Query 189 TGAAGGGAAGGTGAAGAAGAACATGGGAGAAGGAAAGAAGAGGGTGTCTTCAGGCTCTTCAGAGAGAGGCTCCA 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 TGAAGGGAAGGTGAAGAAGAACATGGGAGAAGGAAAGAAGAGGGTGTCTTCAGGCTCTTCAGAGAGAGGCTCCA 592
Query 263 AATCCCCTCTGAAAAGAGCCCAAGAGCAAAGTCCCCGGAAGCGGGGTCGGCCCCCAAAGGATGAGAAGGATCTC 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 AATCCCCTCTGAAAAGAGCCCAAGAGCAAAGTCCCCGGAAGCGGGGTCGGCCCCCAAAGGATGAGAAGGATCTC 666
Query 337 ACCATCCCGGAGTCTAGTACCGTGAAGGGGATGATGGCCGGACCGATGGCCGCGTTTAAATGGCAGCCAACCGC 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 ACCATCCCGGAGTCTAGTACCGTGAAGGGGATGATGGCCGGACCGATGGCCGCGTTTAAATGGCAGCCAACCGC 740
Query 411 AAGCGAGCCTGTTAAAGATGCAGATCCTCATTTCCATCATTTCCTGCTAAGCCAAACAGAGAAGCCAGCTGTCT 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 AAGCGAGCCTGTTAAAGATGCAGATCCTCATTTCCATCATTTCCTGCTAAGCCAAACAGAGA------------ 802
Query 485 GTTACCAGGCAATCACGAAGAAGTTGAAAATATGTGAAGAGGAAACTGGCTCCACCTCCATCCAGGCAGCTGAC 558
|||||||||||||||||||||||||||||||||||
Sbjct 803 ---------------------------------------AGGAAACTGGCTCCACCTCCATCCAGGCAGCTGAC 837
Query 559 AGCACAGCCGTGAATGGCAGCATCACACCCACAGACAAAAAGATAGGATTTTTGGGCCTTGGTCTCATGGGAAG 632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 AGCACAGCCGTGAATGGCAGCATCACACCCACAGACAAAAAGATAGGATTTTTGGGCCTTGGTCTCATGGGAAG 911
Query 633 TGGAATCGTCTCCAACTTGCTAAAAATGGGTCACACAGTGACTGTCTGGAACCGCACTGCAGAGAAATGTGATT 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 912 TGGAATCGTCTCCAACTTGCTAAAAATGGGTCACACAGTGACTGTCTGGAACCGCACTGCAGAGAAATGTGATT 985
Query 707 TGTTCATCCAGGAGGGGGCCCGTCTGGGAAGAACCCCCGCTGAAGTCGTCTCAACCTGCGACATCACTTTCGCC 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 986 TGTTCATCCAGGAGGGGGCCCGTCTGGGAAGAACCCCCGCTGAAGTCGTCTCAACCTGCGACATCACTTTCGCC 1059
Query 781 TGCGTGTCGGATCCCAAGGCGGCCAAGGAC-------------------------------------------- 810
||||||||||||||||||||||||||||||
Sbjct 1060 TGCGTGTCGGATCCCAAGGCGGCCAAGGACCTGATAGAAATCAGGAAATGAGCCAAAACAGCAGCAGGATTCTG 1133
Query 811 -------------------------------------------------------------------------C 811
|
Sbjct 1134 ATCTGAGGTCTGTAGGGCTCCTGAGCATCTGCCCGGGAGCCTGGGCTATTGCTTCTCCCTTGTGTCCCCACAGC 1207
Query 812 TGGTGCTGGGCCCCAGTGGTGTGCTGCAAGGGATCCGCCCTGGGAAGTGCTACGTGGACATGTCAACAGTGGAC 885
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1208 TGGTGCTGGGCCCCAGTGGTGTGCTGCAAGGGATCCGCCCTGGGAAGTGCTACGTGGACATGTCAACAGTGGAC 1281
Query 886 GCTGACACCGTCACTGAGCTGGCCCAGGTGATTGTGTCCAGGGGGGGGCGCTTTCTGGAAGCCCCCGTCTCAGG 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1282 GCTGACACCGTCACTGAGCTGGCCCAGGTGATTGTGTCCAGGGGGGGGCGCTTTCTGGAAGCCCCCGTCTCAGG 1355
Query 960 GAATCAGCAGCTGTCTAATGACGGGATGTTGGTGATCTTAGCGGCTGGAGACAGGGGCTTATATGAGGACTGCA 1033
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1356 GAATCAGCAGCTGTCTAATGACGGGATGTTGGTGATCTTAGCGGCTGGAGACAGGGGCTTATATGAGGACTGCA 1429
Query 1034 GCAGCTGCTTCCAGGCGATGGGGAAGACCTCCTTCTTCCTAGGTGAAGTGGGCAATGCAGCCAAGATGATGCTG 1107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1430 GCAGCTGCTTCCAGGCGATGGGGAAGACCTCCTTCTTCCTAGGTGAAGTGGGCAATGCAGCCAAGATGATGCTG 1503
Query 1108 ATCGTGAACATGGTCCAAGGGAGCTTCATGGCCACTATTGCCGAGGGGCTGACCCTGGCCCAGGTGACAGGCCA 1181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1504 ATCGTGAACATGGTCCAAGGGAGCTTCATGGCCACTATTGCCGAGGGGCTGACCCTGGCCCAGGTGACAGGCCA 1577
Query 1182 GTCCCAGCAGACACTCTTGGACATCCTCAATCAGGGACAGTTGGCCAGCATCTTCCTGGACCAGAAGTGCCAAA 1255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1578 GTCCCAGCAGACACTCTTGGACATCCTCAATCAGGGACAGTTGGCCAGCATCTTCCTGGACCAGAAGTGCCAAA 1651
Query 1256 ATATCCTGCAAGGAAACTTTAAGCCTGATTTCTACCTGAAATACATTCAGAAGGATCTCCGCTTAGCCATTGCG 1329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1652 ATATCCTGCAAGGAAACTTTAAGCCTGATTTCTACCTGAAATACATTCAGAAGGATCTCCGCTTAGCCATTGCG 1725
Query 1330 CTGGGTGATGCGGTCAACCATCCGACTCCCATGGCAGCTGCAGCAAATGAGGTGTACAAAAGAGCCAAGGCGCT 1403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1726 CTGGGTGATGCGGTCAACCATCCGACTCCCATGGCAGCTGCAGCAAATGAGGTGTACAAAAGAGCCAAGGCGCT 1799
Query 1404 GGACCAGTCCGACAACGATATGTCCGCCGTGTACCGAGCCTACATACAC------------------------- 1452
|||||||||.|||||||||||||||||||||||||||||||||||||||
Sbjct 1800 GGACCAGTCTGACAACGATATGTCCGCCGTGTACCGAGCCTACATACACTAAGCTGTCGACACCCCGCCCTCAC 1873
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 1874 CCCTCCAATCCCCCCTCTGACCCCCTCTTCCTCACATGGGGTCGGGGGCCTGGGAGTTCATTCTGGACCAGCCC 1947
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 1948 ACCTATCTCCATTTCCTTTTATACAGACTTTGAGACTTGCCATCAGCACAGCACACAGCAGCACCCTTCCCCTG 2021
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 2022 AGGCCGGTGGGGAGGGGACAAGTGTCAGCAGGATTGGCGTGTGGGAAAGCTCTTGAGCTGGGCACTGGCCCCCC 2095
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 2096 GGACGAGGTGGCTGTGTGTTCACACACACACACACACACACACACACACACACACACAGGCTCTCGCCCCAGGA 2169
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 2170 TAGAAGCTGCCCAGAAACTGCTGCCTGGCTTTTTTTCTTCCGAGCTTGTCTTATCTCAAACCCCTTCCAGTCAA 2243
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 2244 GGAACTAGAATCAGCAACGAGAGTTGGAAGCCTTCCCACAGCTTCCCCCAGAGCGAAGAGGCTGTAGTCATGTC 2317
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 2318 CCCATCCCCCACTGGATTCCCTACAAGGAGAGGCCTTGGGCCCAGATGAGCCAGTACAGACTCCAGACAGAGGG 2391
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 2392 GCCCTTGGGGCCCTCCAACCTCAGGTGATGAGCTGAGAAAGATGTTCACGTCTAAGCGTCCAGTGTGCACCCAG 2465
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 2466 CGCTCCATAGACGCCTTTGTGAACTGAAAAGAGACTGGCAGAGTCCCGAGAAGATGGGGCCCTGGCTTTCCAGG 2539
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 2540 GAGTGCAGCAAGCAGCCGGCCTGCAGGTGAGCATGGAGGCCCGGCCCTCACCGCCTCGAAGCCATGCCCCAGAT 2613
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 2614 GCCACTGCCACAGCGGGCGCTCGCTCCTCCCTAGGCTGTTTTAGTATTTGGATTTGCATTCCATCCCTTGGGAG 2687
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 2688 GGAGTCCTCAGGGCCACTAGTGATGAGCCAAGAGGAGTGGGGGTTGGGGGCGCTCCTTTCTGTTTCCGTTAGGC 2761
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 2762 CACAGACTCTTCACCTGGCTCTGAAGAGCCACTCTTACCTCGGTCCCCTCCCAGTGGTCCCACCTTCTCCACCC 2835
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 2836 TGCCCTGCCAAGTCCCCTGCATGCCCACCGCTCTCCATCCTCCCTCCTCTCCCTCTTCCTCCCGTGGAGACAGT 2909
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 2910 ATTTCTTTCTGTCTGTCCCTTTGGCCCAGACCCAGCCTGACCAACGATGAGCATTTCTTAGGCTCAGCTCTTGA 2983
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 2984 TACGGAAACGAGTGTCTTCACTCCAGCCAGCATCATGGTCTTCGGTGCTTCCCGGGCCCGGGGTCTGTCGGGAG 3057
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 3058 GGAAGAGAACTGGGCCTGACCTACCTGAACTGACTGGCCCTCCGAGGTGGGTCTGGGACATCCTAGAGGCCCTA 3131
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 3132 CATTTGTCCTTGGATAGGGGACCGGGGGGGGCTTGGAATGTTGCAAAAAAAAAAGTTACCCAAGGGATGTCAGT 3205
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 3206 TTTTTATCCCTCTGCATGGGTTGGATTTTCCAAAATCATAATTTGCAGAAGGAAGGCCAGCATTTACGATGCAA 3279
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 3280 TATGTAATTATATATAGGGTGGCCACACTAGGGCGGGGTCCTTCCCCCCTCACAGCTTTGGCCCCTTTCAGAGA 3353
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 3354 TTAGAAACTGGGTTAGAGGATTGCAGAAGACGAGTGGGGGGAGGGCAGGGAAGATGCCTGTCGGGTTTTTAGCA 3427
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 3428 CAGTTCATTTCACTGGGATTTTGAAGCATTTCTGTCTGAACACAAAGCCTGTTCTAGTCCTGGCGGAACACACT 3501
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 3502 GGGGGTGGGGGCGGGGGAAGATGCGGTAATGAAACCGGTTAGTCAATTTTGTCTTAATATTGTTGACAATTCTG 3575
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 3576 TAAAGTTCCTTTTTATGAATATTTCTGTTTAAGCTATTTCACCTTTCTTTTGAAATCCTTCCCTTTTAAGGAGA 3649
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 3650 AAATGTGACACTTGTGAAAAAGCTTGTAAGAAAGCCCCTCCCTTTTTTCTTTAAACCTTTAAATGACAAATCTA 3723
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 3724 GGTAATTAAGGTTGTGAATTTTTATTTTTGCTTTGTTTTTAATGAACATTTGTCTTTCAGAATAGGATTGTGTG 3797
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 3798 ATAATGTTTAAATGGCAAAAACAAAACATGATTTTGTGCAATTAACAAAGCTACTGCAAGAAAAATAAAACACT 3871
Query 1453 ------------- 1452
Sbjct 3872 TCTTGGTAACACA 3884
