Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_12837
Subject:
XR_002957846.1
Aligned Length:
3321
Identities:
1253
Gaps:
2068

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  CGCGCGCCGGCCCAGGAGGAAGCGAAGAAATGCCAACTCGACGTCCGCGCAGCCACTCCGGGGACACCAGGGGG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TCGGGGGAGCAGCCTCCGGTCGCCCCAGGAGAACTTGCGGCGCGGGACCCCGCGCTCAGACGGCGCCTCCGAAA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GCGGCCGTCGGGAGGAGCGCTCCAAAGAACACGGGCGGCGGGAGCGGACGGGCGCGGACACCGGGGCCTCCCGG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  CCTGCGGCCAAGCAGAGTTGCCGGGCGCGGGAGCCCAGACCCGGCGGAGGCTGAGTTCCAGGCCGCGCCGAGCT  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CCGTCAGGGTAGCTCACTGGCGCTGCGACGGGGCCGACCAGCGCCTCGGGCTCGGGAATGGCCCCGGGGCCCGC  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  GCCGGACCAACGGGCGTAACGGAAGCGCCGAGAGGGGAGGGGCGCGGAGTCCAAGACCCGGGGGCGGGGCGAGC  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  CGCGAGGCCGGCTCCCTCTCGCGCTCAGCCGGTCGCACCGTCGCCGCCGCCGCCGCCTCAGACCGCGGGCGCTT  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  CGTTGTCACGAGCCGAAGGGAGGGGGAAGGAGCCGGGAGTCTCTGCGCTCCGGCGCGCGGAGACCGCGGCGCTC  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  GCGTCACGTGCCCCTCGGTCGACCAATGATCCCCGGCGGGCGCGGTGACGTCAGAGTAGCGGCGTGGCCAGTGA  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  CAGCCGGCCCCCGTCACGTGGTCGGGCCCACTCCAATGGGCGGCGCCGGGGCGACTTGCTGTTCCCGGCGGCCC  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  GTGCGTCGGCGGTGGTTGGGTGGTAAGATGGCGGCTGTGAGTCTGCGGCTCGGCGACTTGGTGTGGGGGAAACT  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  CGGCCGATATCCTCCTTGGCCAGGAAAGATTGTTAATCCACCAAAGGACTTGAAGAAACCTCGCGGAAAGAAAT  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  GCTTCTTTGTGAAATTTTTTGGAACAGAAGATCATGCCTGGATCAAAGTGGAACAGCTGAAGCCATATCATGCT  962

Query    1  ------------ATGATAAAAATTAACAAGGGTAAACGATTCCAGCAAGCGGTAGATGCTGTCGAAGAGTTCCT  62
                        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  CATAAAGAGGAAATGATAAAAATTAACAAGGGTAAACGATTCCAGCAAGCGGTAGATGCTGTCGAAGAGTTCCT  1036

Query   63  CAGGAGAGCCAAAGGGAAAGACCAGACGTCATCCCACAATTCTTCTGATGACAAGAATCGACGTAATTCCAGTG  136
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  CAGGAGAGCCAAAGGGAAAGACCAGACGTCATCCCACAATTCTTCTGATGACAAGAATCGACGTAATTCCAGTG  1110

Query  137  AGGAGAGAAGTAGGCCAAACTCAGGTGATGAGAAGCGCAAACTTAGCCTGTCTGAAGGGAAGGTGAAGAAGAAC  210
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  AGGAGAGAAGTAGGCCAAACTCAGGTGATGAGAAGCGCAAACTTAGCCTGTCTGAAGGGAAGGTGAAGAAGAAC  1184

Query  211  ATGGGAGAAGGAAAGAAGAGGGTGTCTTCAGGCTCTTCAGAGAGAGGCTCCAAATCCCCTCTGAAAAGAGCCCA  284
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  ATGGGAGAAGGAAAGAAGAGGGTGTCTTCAGGCTCTTCAGAGAGAGGCTCCAAATCCCCTCTGAAAAGAGCCCA  1258

Query  285  AGAGCAAAGTCCCCGGAAGCGGGGTCGGCCCCCAAAGGATGAGAAGGATCTCACCATCCCGGAGTCTAGTACCG  358
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  AGAGCAAAGTCCCCGGAAGCGGGGTCGGCCCCCAAAGGATGAGAAGGATCTCACCATCCCGGAGTCTAGTACCG  1332

Query  359  TGAAGGGGATGATGGCCGGACCGATGGCCGCGTTTAAATGGCAGCCAACCGCAAGCGAGCCTGTTAAAGATGCA  432
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  TGAAGGGGATGATGGCCGGACCGATGGCCGCGTTTAAATGGCAGCCAACCGCAAGCGAGCCTGTTAAAGATGCA  1406

Query  433  GATCCTCATTTCCATCATTTCCTGCTAAGCCAAACAGAGAAGCCAGCTGTCTGTTACCAGGCAATCACGAAGAA  506
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  GATCCTCATTTCCATCATTTCCTGCTAAGCCAAACAGAGAAGCCAGCTGTCTGTTACCAGGCAATCACGAAGAA  1480

Query  507  GTTGAAAATATGTGAAGAGGAAACTGGCTCCACCTCCATCCAGGCAGCTGACAGCACAGCCGTGAATGGCAGCA  580
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  GTTGAAAATATGTGAAGAGGAAACTGGCTCCACCTCCATCCAGGCAGCTGACAGCACAGCCGTGAATGGCAGCA  1554

Query  581  TCACACCCACAGACAAAAAGATAGGATTTTTGGGCCTTGGTCTCATGGGAAGTGGAATCGTCTCCAACTTGCTA  654
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555  TCACACCCACAGACAAAAAGATAGGATTTTTGGGCCTTGGTCTCATGGGAAGTGGAATCGTCTCCAACTTGCTA  1628

Query  655  AAAATGGGTCACACAGTGACTGTCTGGAACCGCACTGCAGAGAAATGTGATTTGTTCATCCAGGAGGGGGCCCG  728
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629  AAAATGGGTCACACAGTGACTGTCTGGAACCGCACTGCAGAGAAATGTGATTTGTTCATCCAGGAGGGGGCCCG  1702

Query  729  TCTGGGAAGAACCCCCGCTGAAGTCGTCTCAACCTGCGACATCACTTTCGCCTGCGTGTCGGATCCCAAGGCGG  802
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703  TCTGGGAAGAACCCCCGCTGAAGTCGTCTCAACCTGCGACATCACTTTCGCCTGCGTGTCGGATCCCAAGGCGG  1776

Query  803  CCAAGGAC------------------------------------------------------------------  810
            ||||||||                                                                  
Sbjct 1777  CCAAGGACGTAAGGACCCCCTCCCTCCCCTCAGCAACTCCGGGTCACAGCCAGGATTGCTGGCTGGCCTCTTCC  1850

Query  811  --------------------------------------------------------------------------  810
                                                                                      
Sbjct 1851  CCTCCTCCCCTGCACACCAAGTGAGTGTCCACATGTGGGGGGCTGAATTTCCCATCAGGGGCCATCTCCCATTG  1924

Query  811  --------------------------------------------------------------------------  810
                                                                                      
Sbjct 1925  TGAAGGGTGTTTGCATTAATTGAATACAGACTTCCTTTAATTCAGATCAAAGAATGAACACTACTAGGGCCCTT  1998

Query  811  --------------------------------------------------------------------------  810
                                                                                      
Sbjct 1999  GAAGTCTGTGCTGAAATGTGTCTTGAACAGGCTTCATGTGTTCTTGTTGAACTAGAAGCTTTGGAACTGAATGT  2072

Query  811  --------------------------------------------------------------------------  810
                                                                                      
Sbjct 2073  GCCTTTGGTCCAGGTGCCAAGCTTCTATGTTTAGCTGTCACTGTATTTGTATATTTTAGAAGTTCAAGTGTGGT  2146

Query  811  --------------------------------------------------------------------------  810
                                                                                      
Sbjct 2147  AGTCATCTTATTAAACTGGTGACTAGCCTAATCCAAGTAAATCCAAAGAAGTCCCCAAAGTAAATGCTGAGGTT  2220

Query  811  --------------------------------------------------------------------------  810
                                                                                      
Sbjct 2221  TATTCTTTTAAATGGGGTTTGTTTTTTTTTTTTTTTAAATAAAAAGAAATGCACACACTCACATAGATTCTTTT  2294

Query  811  --------------------------------------------------------------------------  810
                                                                                      
Sbjct 2295  TAAAGATAAATGGGAGCATGCGGGAAGTACTTTTCTATCCCTTGCTTATTTCATTGTTCTTCCCTTTTCAGCTG  2368

Query  811  --------------------------------------------------------------------------  810
                                                                                      
Sbjct 2369  ATAGAAATCAGGAAATGAGCCAAAACAGCAGCAGGATTCTGATCTGAGGTCTGTAGGGCTCCTGAGCATCTGCC  2442

Query  811  ----------------------------------------CTGGTGCTGGGCCCCAGTGGTGTGCTGCAAGGGA  844
                                                    ||||||||||||||||||||||||||||||||||
Sbjct 2443  CGGGAGCCTGGGCTATTGCTTCTCCCTTGTGTCCCCACAGCTGGTGCTGGGCCCCAGTGGTGTGCTGCAAGGGA  2516

Query  845  TCCGCCCTGGGAAGTGCTACGTGGACATGTCAACAGTGGACGCTGACACCGTCACTGAGCTGGCCCAGGTGATT  918
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2517  TCCGCCCTGGGAAGTGCTACGTGGACATGTCAACAGTGGACGCTGACACCGTCACTGAGCTGGCCCAGGTGATT  2590

Query  919  GTGTCCAGGGGGGGGCGCTTTCTGGAAGCCCCCGTCTCAGGGAATCAGCAGCTGTCTAATGACGGGATGTTGGT  992
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2591  GTGTCCAGGGGGGGGCGCTTTCTGGAAGCCCCCGTCTCAGGGAATCAGCAGCTGTCTAATGACGGGATGTTGGT  2664

Query  993  GATCTTAGCGGCTGGAGACAGGGGCTTATATGAGGACTGCAGCAGCTGCTTCCAGGCGATGGGGAAGACCTCCT  1066
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2665  GATCTTAGCGGCTGGAGACAGGGGCTTATATGAGGACTGCAGCAGCTGCTTCCAGGCGATGGGGAAGACCTCCT  2738

Query 1067  TCTTCCT-------------------------------------------------------------------  1073
            |||||||                                                                   
Sbjct 2739  TCTTCCTAGGTAACACGCCTGCACCTGTCAGGCCTGGAGCCTGGGGCCACATCTCCTCTGTTTCACACTGATGA  2812

Query 1074  --------------------------------------------------------------------------  1073
                                                                                      
Sbjct 2813  CAGCGTCAGTCCCACACGGCCTTTCTGCCGGGGACCCTGGGGAAGGTTTCCTTTCACCTGCATAGTCAGTGCGT  2886

Query 1074  --------------------------------------------------------AGGTGAAGTGGGCAATGC  1091
                                                                    ||||||||||||||||||
Sbjct 2887  GGAAGGAGGAAGAGCCAGTCTGTCGGGGGCAGGTGAAGGGGGCCTCCCCTGGAGAGAGGTGAAGTGGGCAATGC  2960

Query 1092  AGCCAAGATGATGCTGATCGTGAACATGGTCCAAGGGAGCTTCATGGCCACTATTGCCGAGGGGCTGACCCTGG  1165
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2961  AGCCAAGATGATGCTGATCGTGAACATGGTCCAAGGGAGCTTCATGGCCACTATTGCCGAGGGGCTGACCCTGG  3034

Query 1166  CCCAGGTGACAGGCCAGTCCCAGCAGACACTCTTGGACATCCTCAATCAGGGACAGTTGGCCAGCATCTTCCTG  1239
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3035  CCCAGGTGACAGGCCAGTCCCAGCAGACACTCTTGGACATCCTCAATCAGGGACAGTTGGCCAGCATCTTCCTG  3108

Query 1240  GACCAGAAGTGCCAAAATATCCTGCAAGGAAACTTTAAGCCTGATTTCTACCTGAAATACATTCAGAAGGATCT  1313
            ||||||||||||||                                                            
Sbjct 3109  GACCAGAAGTGCCA------------------------------------------------------------  3122

Query 1314  CCGCTTAGCCATTGCGCTGGGTGATGCGGTCAACCATCCGACTCCCATGGCAGCTGCAGCAAATGAGGTGTACA  1387
                                                                                      
Sbjct 3123  --------------------------------------------------------------------------  3122

Query 1388  AAAGAGCCAAGGCGCTGGACCAGTCCGACAACGATATGTCCGCCGTGTACCGAGCCTACATACAC  1452
                                                                             
Sbjct 3123  -----------------------------------------------------------------  3122

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