Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_12945
- Subject:
- XR_001737527.1
- Aligned Length:
- 4229
- Identities:
- 731
- Gaps:
- 3498
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GGGTGGAAGGAAGAGGAAGAGGGTCTGGGCGATGGTGCATCCGGGACGAGCCTCCAGAGACCAAGCGGGATAGA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TACCCCATGTTTCCCCATCACTCGAGGAGTCTGGGCAGAGACTGGACTACACCGTGGGAGAATCTGCAAAGGTG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TTGCTGGAACAGACATATTTCTAGTTGTATGAGGTGGCCTGGACATTACTCTCGAGCTCCTTACCCATACTTCA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GTAGTAGGCATTTTTCACTAAATTGGAGACCACCCTGTTTGTTTGAGTCTAGAACTCAGTTCCAGTACTGTAAC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TGGAGACCTGACAACCTGAGCCAGACATCTTTGATTCATCTCTCTAGTTACGTCATGAACGCTGAGGGAGATGA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GCCTTCATCAAAACGAAGAAAACACCAAGGTGTGATAAAGCGGAATTGGGAATATATATGTAGCCATGATAAAG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 AAAAAACGAAGATCCTAGGAGACAAAAATGTTGATCCCAAATGTGAAGACAGTGAGAACAAGTTTGACTTTTCA 518
Query 1 ---ATGTCCTATAATATACTTTCACAAGATTTACTGGAAGATAACTCTCACCTTTATAGACATTGCCGGCGGCC 71
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 GTGATGTCCTATAATATACTTTCACAAGATTTACTGGAAGATAACTCTCACCTTTATAGACATTGCCGGCGGCC 592
Query 72 AGTATTACACTGGAGTTTTAGGTTTCCCAATATTCTGAAAGAAATTAAACATTTTGATGCAGACGTACTTTGTT 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 AGTATTACACTGGAGTTTTAGGTTTCCCAATATTCTGAAAGAAATTAAACATTTTGATGCAGACGTACTTTGTT 666
Query 146 TGCAAGAAGTTCAAGAAGATCATTATGGAGCAGAGATCAGGCCAAGTTTGGAATCACTGGGTTATCACTGTGAA 219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 TGCAAGAAGTTCAAGAAGATCATTATGGAGCAGAGATCAGGCCAAGTTTGGAATCACTGGGTTATCACTGTGAA 740
Query 220 TATAAGATGCGGACAGGAAGGAAACCTGATGGCTGTGCTATTTGCTTCAAACATTCCAAATTTTCACTCTTGTC 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 TATAAGATGCGGACAGGAAGGAAACCTGATGGCTGTGCTATTTGCTTCAAACATTCCAAATTTTCACTCTTGTC 814
Query 294 AGTGAACCCAGTGGAATTCTTCCGCCCTGATATTTCTCTGTTGGACAGAGACAATGTTGGATTAGTTTTACTCT 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 AGTGAACCCAGTGGAATTCTTCCGCCCTGATATTTCTCTGTTGGACAGAGACAATGTTGGATTAGTTTTACTCT 888
Query 368 TACAGCCCAAAATTCCATATGCTGCCTGCCCTGCAATCTGCGTAGCAAATACGCATCTGTTGTATAATCCAAGG 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 TACAGCCCAAAATTCCATATGCTGCCTGCCCTGCAATCTGCGTAGCAAATACGCATCTGTTGTATAATCCAAGG 962
Query 442 CGAGGTGATATTAAGCTGACGCAATTGGCAATGCTACTGGCAGAGATTTCCAGTGTTGCCCACCAGAAAGATGG 515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 CGAGGTGATATTAAGCTGACGCAATTGGCAATGCTACTGGCAGAGATTTCCAGTGTTGCCCACCAGAAAGATGG 1036
Query 516 CAGCTTCTGCCCTATTGTTATGTGTGGTGACTTTAATTCTGTTCCTGGTTCTCCACTATATAGTTTCATAAAGG 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 CAGCTTCTGCCCTATTGTTATGTGTGGTGACTTTAATTCTGTTCCTGGTTCTCCACTATATAGTTTCATAAAGG 1110
Query 590 AAGGAAAATTGAATTATGAAGGACTTCCCATAGGAAAGGTATCTGGCCAGGAACAGTCTTCACGGGGACAAAGA 663
||||||||||||||||||||||||||||||||||||
Sbjct 1111 AAGGAAAATTGAATTATGAAGGACTTCCCATAGGAA-------------------------------------- 1146
Query 664 ATTTTATCTATTCCAATTTGGCCCCCAAACCTAGGTATCTCACAGAACTGTGTGTATGAGGTACAGCAGGTACC 737
Sbjct 1147 -------------------------------------------------------------------------- 1146
Query 738 AAAAGTAGAAAAGACAGACAGTGATCTGACACAAACACAGCTGAAGCAAACAGAGGTCCTAGTGACAGCTGAAA 811
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1147 ---------------AGACAGTGATCTGACACAAACACAGCTGAAGCAAACAGAGGTCCTAGTGACAGCTGAAA 1205
Query 812 AATTGTCTTCAAATTTACAGCACCATTTCAGTTTGTCATCTGTTTAT--------------------------- 858
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1206 AATTGTCTTCAAATTTACAGCACCATTTCAGTTTGTCATCTGTTTATTCACATTACTTTCCTGACACTGGAATT 1279
Query 859 -------------------------------------------------------------------------- 858
Sbjct 1280 CCAGAAGTGACCACCTGTCATTCCCGAAGTGCCATAACTGTGGATTATATTTTCTACTCTGCAGAAAAGGAAGA 1353
Query 859 -------------------------------------------------------------------------- 858
Sbjct 1354 TGTTGCTGGGCACCCAGGAGCTGAAGTTGCTTTGGTTGGTGGCTTGAAACTTCTAGCTAGACTGTCACTTCTTA 1427
Query 859 -------------------------------------------------------------------------- 858
Sbjct 1428 CAGAACAAGACTTATGGACTGTTAATGGACTTCCAAACGAAAATAACTCTTCAGATCATCTGCCTTTATTGGCA 1501
Query 859 -------------------------------------------------------------------------- 858
Sbjct 1502 AAGTTCAGACTTGAGCTCTGACTCTCTTTGATCACATACTAATTTTCTTTCCAATTTGTATTGTTTTTCAAAGA 1575
Query 859 -------------------------------------------------------------------------- 858
Sbjct 1576 ATGTAAAGTTCTTAAGTGTATGCATGTTGTTTATTTTTGCACTGTGGAGATTCTGAAGCGGTTATGTTAGATGC 1649
Query 859 -------------------------------------------------------------------------- 858
Sbjct 1650 TTTGAAACTCCATATCAGAAGAAATAACTTTATAACAATTTTTTTTAATAATGAAAAATATTTTCGTGACAAGT 1723
Query 859 -------------------------------------------------------------------------- 858
Sbjct 1724 GAGCTCTAAATTCTCTTTATTGTAAAAGAGATGTAAAGGTTTTATATTCTAAATCCTAGTAAAATTGACAGTGA 1797
Query 859 -------------------------------------------------------------------------- 858
Sbjct 1798 TTTTTAAATATAATGCATCTTCCTTTGTCTGCTTAGTAAAAAATTTCATTTCATAATTTTGGCAAGCTCTGTAG 1871
Query 859 -------------------------------------------------------------------------- 858
Sbjct 1872 TGGATCCAAAGTATCTTTGAGTTCTTGCAAACTACAAGTTGTTTCCTTTCCAGAAGGCTTGATTTCATTAGGAG 1945
Query 859 -------------------------------------------------------------------------- 858
Sbjct 1946 ACCCCTCTATTGAGTTCTAAATAGTTTATCTTAGAAAGCCTTGGGTCATTCACAGGTATCCAACCAGCCATTGT 2019
Query 859 -------------------------------------------------------------------------- 858
Sbjct 2020 TTAGTTTGTTTTTGAAGGGGTTTGATAATGCTTTTTAAGTTGTACAGAATGCTTAATCCATCTTATTACTGTCC 2093
Query 859 -------------------------------------------------------------------------- 858
Sbjct 2094 TGAGCCATGTAATATGCCTGCATCGTGTTGGGGAAATGTTTGGGAAATATAAGCCAGCATAACGTGTAAAGCTC 2167
Query 859 -------------------------------------------------------------------------- 858
Sbjct 2168 ACTCTTTCACCCTGGAACAGACAAGAGGTGGGCTTAATAGAGGCAGAGACTGGGGATATACCTTTGTTTCCCTA 2241
Query 859 -------------------------------------------------------------------------- 858
Sbjct 2242 GCATTTTTATTTATTTATTTTTATTTTATTTTATTTTTTGAGATGGAGTTTCACTCTTGTTGCCCAGGCTGGGG 2315
Query 859 -------------------------------------------------------------------------- 858
Sbjct 2316 GTGCAATGGCGCAATCTTTGCTCACTGCAACCCCTGCCTCCCGGGCTCAAGCGATTCTCCTGCCTCAGCCTCTC 2389
Query 859 -------------------------------------------------------------------------- 858
Sbjct 2390 GAGTAGCTGGGATTACAGGCATGCGTCACCACTCCCAGCTAATTTTGTATTTTCAGTAGAGACAGGGTTTCCCC 2463
Query 859 -------------------------------------------------------------------------- 858
Sbjct 2464 ATGTTGGTTAGGCTGGTCTCGAACTCCCAACCTCAGGTGATCCGCCCACCTCAGCTCTCAAAGTGCTGGGATTA 2537
Query 859 -------------------------------------------------------------------------- 858
Sbjct 2538 CAGGCGGGAGCCACTGCACATGGCAGCATTTTTTAAAAATTCAGTTTTAAGATCTCTGGTTTAGGGGAGAGATT 2611
Query 859 -------------------------------------------------------------------------- 858
Sbjct 2612 TTATTTTACTGAACCAGTTCTATAGAAATTTATTTTATTAGGAAATTTGTCTTTGGAACAAAGTGGCAGCTATA 2685
Query 859 -------------------------------------------------------------------------- 858
Sbjct 2686 AAATTATTTTTGTTAAGCCTCAGAAATATGAGGAAGCCTGTAAAACTCTAGTGGGGAGATATTAACTTGGAGAC 2759
Query 859 -------------------------------------------------------------------------- 858
Sbjct 2760 CTAATGCTCTGTAAATAGTCATTTAAACTGTTGGTTTTAGTGGTTTTGTTTCTAAAATGTTTTCTTTTACCGTG 2833
Query 859 -------------------------------------------------------------------------- 858
Sbjct 2834 ATGCACCAGTATGAGATGGTGCTGACACTTTCTATGAAGTGGTTATGAGCAGGTTTAATAAATCCTCTATACAA 2907
Query 859 -------------------------------------------------------------------------- 858
Sbjct 2908 GTGTTTGAATCAATTTTAAAACATAAAAAGTGGAAATTTCCTTTTTTGTAGACAGTAGGAACAAGGAATTATAT 2981
Query 859 -------------------------------------------------------------------------- 858
Sbjct 2982 GCATTTTTACTAAGTAGTAATTTTACACTGAATTGTAAATGTTTTTACAGTGAGTTTTATTAATAGAATGCTTC 3055
Query 859 -------------------------------------------------------------------------- 858
Sbjct 3056 ACCTTAAATTGGAAAACAATAATAGTCTTGGACTAAGTCTTTGTACTAAAGCATTTGCTATAATTATTTTTAAA 3129
Query 859 -------------------------------------------------------------------------- 858
Sbjct 3130 AAAACAAACAGATGAAAACCTCAGAGAAGGCATGTGGATTATAAGATTTGTCTAGTAAAAATTGTAATTGAATA 3203
Query 859 -------------------------------------------------------------------------- 858
Sbjct 3204 TGTTTAAATATTTAATTTCTCATTTTGGGGGGTTTTTATTTTTTTATTTTTTAGATGGTGTCTCACGCTATCGC 3277
Query 859 -------------------------------------------------------------------------- 858
Sbjct 3278 CCAGGCTGGAGTGCAGTGGCGCGAACTCGGCTCACTGCAACCTCCGCCTCCTGGGTTCAAGCAATTCTCCTTCC 3351
Query 859 -------------------------------------------------------------------------- 858
Sbjct 3352 TCAGCCTCCCAAGTAGCTGGGATTACAGGCATGCACCACCATGCCCAGCTAATTTTTGTATTTTTAGTAGAGAT 3425
Query 859 -------------------------------------------------------------------------- 858
Sbjct 3426 GGAATTTTGCCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAGGGGTGATCCACCCGCCTCGGGCTCCCA 3499
Query 859 -------------------------------------------------------------------------- 858
Sbjct 3500 AAGTGCTGTGATTACAGGCATGAGCCACCATGCCTGGCCTTTGGGGGGATTTTAATTACAGTATTAATTATAGT 3573
Query 859 -------------------------------------------------------------------------- 858
Sbjct 3574 TCTAGGATTTCCCACATTTTATAGTAGTAGTTTGCAGGATATTATGTGCCCTAATTAGCAGATATAGACATTAT 3647
Query 859 -------------------------------------------------------------------------- 858
Sbjct 3648 CAAATTATAATGATAGTATAATTATCCCTTTTTAATATTGGGGAAAGAAAAATGAAAATTCATTAGTTAATTAC 3721
Query 859 -------------------------------------------------------------------------- 858
Sbjct 3722 TGCTTTGTGTTGTGTGAATTTATTAACAAATAACATTATTACATATAGGTCATTGTTAACAAACAAACATCCCT 3795
Query 859 -------------------------------------------------------------------------- 858
Sbjct 3796 GAAAACCTCTGTGAAAATTTAATTTTTTATATCCTGATTAATATATTGTGACTTTAGGCCCATTTTTCATGTGC 3869
Query 859 -------------------------------------------------------------------------- 858
Sbjct 3870 TTCACTTTGATAGAGTTAATCCATAAAATTGCTCTTTACTTTAGCTTATCAAATGAAGTATTATTTTGTGGACT 3943
Query 859 -------------------------------------------------------------------------- 858
Sbjct 3944 GGAGGCCAAAAAGTCAATGTGAGCTTCTCACAGGTTTTTAAAGCTCCACTAAAAATAATTATCCACTTGTCTTT 4017
Query 859 -------------------------------------------------------------------------- 858
Sbjct 4018 ACTTTTGTTGACCAGAATAGTTGGTAACTCTGCCAGAGCCTGTACTTACCTGCCAAAAACAATTAAATCTGGTT 4091
Query 859 ----------- 858
Sbjct 4092 AATGCCTGAAA 4102
