Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_12984
- Subject:
- XM_006538380.2
- Aligned Length:
- 3977
- Identities:
- 1153
- Gaps:
- 2644
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGCACACAGGAGGCTGCAGTGCTAAAACAAAGCCCCACATAAAAGAAGAATGCATCATTCCCACACCGTGCTA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CAAGCCCAGAGAGAAACTTCCAATAGAGGCCAAGCTGCCATGGTTCAAGCAAGCCCAGGAGCTAGAGGAAGGAG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CTGCAGTGTCTGAAGAGCCTTCGTTCATCCCAGAAGCTTGGTCGGCCTGTACTGTCACCTGTGGCGTGGGGACA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CAGGTGCGAATAATAAGATGCCAGGTGCTCCTGCCTTTCTCTCAGTCTGTGGCTGACCTGCCTGCGGATGAATG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CGAAGGGCCTAAGCCAGCATCGCAACGTGCCTGTTATGCGGGACCGTGCAACGGGGAAACTCCGGAATTTAACC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CGGATAACGGAGACGGACTCTTGGGTGGCCTGCAGGACCTGGACGAGCTGTATGACTGGGAATATGAGGGCTTC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 ACCAAGTGCTCTGAGTCATGTGGAGGAGGTGTCCAGGAGGCTGTGGTAAGCTGCCTGAACAAACAGACCCGGGA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 ACTCGCTGATGAGAACCTGTGTGTGACCAGCCGACGGCCCCCGCAGCTCCTGAAATCCTGTAACTTGGATCCCT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GCCCAGCAAGGTGGGAAATTGGCAAGTGGAGCCCATGTAGCCTCACCTGTGGGGTTGGCCTGCAGACCAGAGAT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 GTTGTCTGTTCCCACCTACTCTCCAGAGAGATGAACGAGGTGGTTGTCCTGGCCGATGAGCTGTGCCATCACCC 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CAAACCCAGCACAGTGCAAGCCTGCAACCGTTTCAATTGCCCCCCAGCCTGGTACCCTGCACAGTGGCAGCTGT 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 GTTCCAGGACCTGTGGAGGAGGGATTCAGAAACGTGATGTTCTCTGCAAGCAGCGTATGGCTGACGGCAGCTTC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 CTGGAGCTTCCAGAGACCTTCTGTTCTGCCTCCAAACCAACCTCCCACCAAGGGTGCAAGAAAGATGACTGCCC 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 CAGTGAGTGGCTTCTCTCAGAGTGGTCAGAGTGCTCTGTGAGCTGTGGGGAGGGCACCCAGACTCGAAGTGCCA 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 TTTGCCAGAGGGTGCTGAAAACTGGGGTCTCCACTGTTGTCAATTCTACTTTGTGCCCTCCCCTGCCCTTCTCT 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 TCCTCCATCAGACCCTGTATGCTGGCAACCTGTGCAAGGCCTGGAAGGCCTTCCACCAAGCACAGTCCTCACAT 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 CGCAGCTGCACGAAACATATACATCCAGACCCGCAGGCAGAGGAAGCTGCACTTCGTTGTGGGAGGATTTGCTT 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 ACCTGCTTCCCAAGACTACCGTGGTGCTCCGGTGTCCCACACGCAGATTCCGCAAGCCCCTCATCACGTGGGAA 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 AAGGACGGCCAGCACAGCATCAGCTCGGCTCATGTCACCGTAGCCCCTTTTGGCTACCTGAAGATCCATCGCCT 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 CAAGCCCTCAGATGCGGGCATCTACACCTGTTCTGCGGGGCCCGCCCGGGAGCAGTTTGTGATTAAGCTCATTG 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 GAGGCAACCGCAAGCTCGTGGCCAGGCCCCTGAGCCTTTGGAGTGAGGAAGAGGAGGCCCTGCAGGTGAGGAAG 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 ACCAATCCAAAAGAAGCCTTGCAAACCCACAAACACCAAAATGGCATCTTCTCCAACGGCAGCAAAGCTGAGAA 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 GCGCGGCCTCACTGCAGATCCTGGGAACCGCTATGATGACATTGTGTCTAGGCTGTTGGAGCAGGGCGGCTGGC 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 CAGGAGAGCTCCTGGCCTCGTGGGAGGTGCAGGACTCTGCAGAAAGGAACGCATCCTCAGAAGAGGATCCCAAT 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 GCTGAACAGGCCCTCCTGCATCTCCCCTTCACCATGGTGGCCGAGCAGAAGCGTCTGGATGACATCCTCAGGAA 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 CCTGTCCCAGCAGCCAGAGGAGCTACGGGACCTCTACAGCAAGCACCTGGTGGCCCAGCTGGCCCAGGACATCT 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 TCCGAAGCCACCTGGAGAACCAGGATCTGCTTCCTAAGCCCTCTGAGCAGAGGTTTCCTCCCATGGCCGTCCCA 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 GCTCACAAACATGTCTCTGGCTTCAGCAGCTCCCTAAGGAGCTCATCTGGAGAGGCTGGAGGTGGCTCCCGTAG 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 GCCTCATCGCAAGCCCGCCATCTTGCGGAAGATCTCAGCGGCACAGCAACTCTCAGCCTCGGAGGTAGTCACCC 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 ACCTGGGGCAGACTGTGGCTCTAGCCAGTGGGACCCTGAGTGTGCTTCTGCACTGTGAGGCGGTAGGCAACCCA 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 AGGCCCACCATCCACTGGACCAGGAACGGAGAAGCAGTTCAATTCAGTGACAGGATTCTTCTACAGCCAGATGA 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 TTCCTTACAGATCTTGGCACCAGTGGAAGCTGATGTGGGTTTCTATACTTGCAATGCCACAAATGCCTTGGGAT 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 ATGACTCTGTCTCCATTGCTGTCACATTAGCAGGAAAGCCACTAGTGAAGACATCCCGAATGACTGTGCTCAAC 2442
Query 1 -------------------------------------------------------------ATGTG---TTTGA 10
||||| .||.|
Sbjct 2443 ACAGAGAAGCCTACAGTCACAGTGGATATCGGTGGCACCGTCAGAACCGTCCGAGGAGTGAATGTGACAATTAA 2516
Query 11 CTGATGAGTGGGGTTTTTTGTTTTTTTTTTTCTTCCTAGGAGTGCCTGAAGCTGAAGTCACTTGGTTCAGGAAT 84
|||...||||| .|||.||.|||||||||||||||||.||||||||.|||
Sbjct 2517 CTGCCAAGTGG-------------------------CAGGTGTACCTGAAGCTGAAGTCACCTGGTTCAGAAAT 2565
Query 85 AAAAGCAAACTGGGCTCC-------------------------CCGCACCATCTGCACGAAGGCTCCTTGCTGC 133
|||||||||.|||||||| || |||||.|||||.||.|||||||||||||
Sbjct 2566 AAAAGCAAATTGGGCTCCTCCCACCACCTGCATGAGGGCTCCTCC-CACCACCTGCATGAGGGCTCCTTGCTGC 2638
Query 134 TCACAAACGTGTCCTCCTCGGATCAGGGCCTGTACTCCTGCAGGGCGGCCAATCTTCATGGAGAGCTGACTGAG 207
|||||.|.|||||||.|||.|||||.||||||||.|||||||||||.||||||||.||.|||||.|.|||.|||
Sbjct 2639 TCACAGATGTGTCCTTCTCTGATCAAGGCCTGTATTCCTGCAGGGCAGCCAATCTACACGGAGAACAGACAGAG 2712
Query 208 AGCACCCAGCTGCTGATCCTAGATCCCCCCCAAGTCCCCACACAGTTGGAAGACATCAGGGCCTTGCTCGCTGC 281
|||||.|||||.|||||.|||||||||||.|||||||||||||||||||||||||||||||||||||||...||
Sbjct 2713 AGCACGCAGCTCCTGATTCTAGATCCCCCGCAAGTCCCCACACAGTTGGAAGACATCAGGGCCTTGCTCTTAGC 2786
Query 282 CACTGGACCGAACCTTCCTTCAGTGCTGACGTCTCCTCTGGGAACACAGCTGGTCCTGGATCCTGGGAATTCTG 355
|||||||||||||||||||||.|||||.|.|||.||||||||||||||||||||||||||||||||||||||.|
Sbjct 2787 CACTGGACCGAACCTTCCTTCGGTGCTTATGTCCCCTCTGGGAACACAGCTGGTCCTGGATCCTGGGAATTCCG 2860
Query 356 CTCTCCTTGGCTGCCCCATCAAAGGTCACCCTGTCCCTAATATCACCTGGTTTCATGGTGGTCAGCCAATTGTC 429
|||||||||||||||||||||||||||||||...|||.||||||||||||||.||...|||.||||||||||.|
Sbjct 2861 CTCTCCTTGGCTGCCCCATCAAAGGTCACCCCACCCCCAATATCACCTGGTTCCAAAATGGCCAGCCAATTGCC 2934
Query 430 ACTGCCACAGGACTGACGCATCACATCTTGGCAGCTGGACAGATCCTTCAAGTTGCAAACCTTAGCGGTGGGTC 503
||||||.|.||.|||||.||.|||||||.||.|||||||||||||||.|.|||||||||.||.||.||.||..|
Sbjct 2935 ACTGCCCCGGGGCTGACCCACCACATCTGGGGAGCTGGACAGATCCTACGAGTTGCAAATCTCAGTGGAGGACC 3008
Query 504 TCAAGGGGAATTCAGCTGCCTTGCCCAGAATGAGGCAGGGGTGCTCATGCAGAAGGCATCTTTAGTGATCCAAG 577
|||||||||.|||||||||||.||.||||||||.||||||...|||.|||||||.||.|||||.||||||||||
Sbjct 3009 TCAAGGGGAGTTCAGCTGCCTGGCTCAGAATGAAGCAGGGACCCTCCTGCAGAAAGCCTCTTTGGTGATCCAAG 3082
Query 578 ATTACTGGTGGTCTGTGGACAGACTGGCAACCTGCTCAGCCTCCTGTGGTAACCGGGGGGTTCAGCAGCCCCGC 651
|||||||||||||||||||.|||||||||||||||||.||.||.||||||||..|.||..||||.|||||.||.
Sbjct 3083 ATTACTGGTGGTCTGTGGATAGACTGGCAACCTGCTCCGCATCTTGTGGTAATAGAGGCATTCATCAGCCGCGA 3156
Query 652 TTGAGGTGCCTGCTGAACAGCACGGAGGTCAACCCTGCCCACTGCGCAGGGAAGGTTCGCCCTGCGGTGCAGCC 725
.|.|||||..|.|||||||.||||||.||..||||||..|||||..||||.|||..|||.||.||.||||||||
Sbjct 3157 CTCAGGTGTTTACTGAACACCACGGAAGTTGACCCTGAGCACTGTACAGGAAAGCCTCGGCCCGCCGTGCAGCC 3230
Query 726 CATCGCGTGCAACCGGAGAGACTGCCCTTCTCGGTGGATGGTGACCTCCTGGTCTGCCTGTACCCGGAGCTGTG 799
..|.||.|||||||||||||||||.||||||||.|||||||||||.||||||||.||||||||||||||.||.|
Sbjct 3231 TGTTGCCTGCAACCGGAGAGACTGTCCTTCTCGATGGATGGTGACGTCCTGGTCCGCCTGTACCCGGAGTTGCG 3304
Query 800 GGGGAGGTGTCCAGACCCGCAGGGTGACCTGTCAAAAGCTGAAAGCCTCTGGGATCTCCACCCCTGTGTCCAAT 873
|.||||||||.||.|||||.||||||||||||||.|||.|||||||.|||||.||.||.|||||.|||||||||
Sbjct 3305 GTGGAGGTGTACAAACCCGAAGGGTGACCTGTCAGAAGTTGAAAGCTTCTGGTATTTCTACCCCGGTGTCCAAT 3378
Query 874 GACATGTGCACCCAGGTCGCCAAGCGGCCTGTGGACACCCAGGCCTGTAACCAGCAGCTGTGTGTGGAGTGGGC 947
||||||||||..||..|.|||||.|||||||||||||||||||||||.|||||||||||.||||||||.|||||
Sbjct 3379 GACATGTGCAGTCAACTGGCCAAACGGCCTGTGGACACCCAGGCCTGCAACCAGCAGCTCTGTGTGGAATGGGC 3452
Query 948 CTTCTCCAGCTGGGGCCAGTGCAATGGGCCTTGCATCGGGCCTCACCTAGCTGTGCAACACAGACAAGTCTTCT 1021
||||||||||||||||||||||||||||||||||||.||.||||.|||.||||||||.|||||.||.|||||||
Sbjct 3453 CTTCTCCAGCTGGGGCCAGTGCAATGGGCCTTGCATAGGCCCTCGCCTTGCTGTGCAGCACAGGCAGGTCTTCT 3526
Query 1022 GCCAGACACGGGATGGCATCACCTTACCATCAGAGCAGTGCAGTGCTCTTCCGAGGCCTGTGAGCACCCAGAAC 1095
|||||||.||||||||||||||||||||||||||||||||||||||.||.||.|||||.|||||||||||.|||
Sbjct 3527 GCCAGACCCGGGATGGCATCACCTTACCATCAGAGCAGTGCAGTGCCCTCCCCAGGCCCGTGAGCACCCAAAAC 3600
Query 1096 TGCTGGTCAGAGGCCTGCAGTGTACACTGGAGAGTCAGCCTGTGGACCCTGTGCACAGCTACCTGTGGCAACTA 1169
|||||||||||||||||||||||||||||||||||||||||.||||||||.|||||.||.||||||||||||||
Sbjct 3601 TGCTGGTCAGAGGCCTGCAGTGTACACTGGAGAGTCAGCCTCTGGACCCTATGCACGGCAACCTGTGGCAACTA 3674
Query 1170 CGGCTTCCAGTCCCGGCGTGTGGAGTGTGTGCATGCCCGCACCAACAAGGCAGTGCCTGAGCACCTGTGCTCCT 1243
.|||||||||||||||||.|||||||||||.||.|..||||||||||||||.|||||.|||||||||||.||||
Sbjct 3675 TGGCTTCCAGTCCCGGCGGGTGGAGTGTGTTCACGTGCGCACCAACAAGGCTGTGCCCGAGCACCTGTGTTCCT 3748
Query 1244 GGGGGCCCCGGCCTGCCAACTGGCAGCGCTGCAACATCACCCCATGTGAAAACATGGAGTGC------------ 1305
|||||||||||||.|||||||||||.|||||||||.||||.|||||||||||| |||.|
Sbjct 3749 GGGGGCCCCGGCCCGCCAACTGGCAACGCTGCAACGTCACTCCATGTGAAAAC----AGTACGTTCCAATCCCA 3818
Query 1306 -AGAGACA--------------------CCACCAGGTACTGCGAGAAGGTGAAACAGCTGAAACTCTGCC--AA 1356
||| ||| |||.|.||||| ||| |.|.||...|||..|||..||| ||
Sbjct 3819 AAGA-ACATTCTGCAAATTCCCTACAGGCCATCGGGTAC----AGA--GGGCAATCCCTGGGACTGAGCCTGAA 3885
Query 1357 CTCAG----------CCAGTTTAAATCTCGCTGCTGTGGAACTTGTGGCAAAGCG 1401
|.||| |.||| ||.|
Sbjct 3886 CACAGGGCACTGGATCAAGT-----TCCC-------------------------- 3909
