Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_13037
Subject:
NR_136580.1
Aligned Length:
3184
Identities:
1165
Gaps:
1878

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GGCGTCTGAACCCGCCCCGGGGGTGCCAAGGTGCGTCTCCAGTCTGACGCGACCGCCTGGGGCGGAGTCAGCGG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GACGTGCCACCTGCAGTGCTGGCTAGGGCTTTTTATTTACTAGGGAGCAGTTTCCCCGCGCGACAGTTCGGGAG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CGCGCAGGCAGTCGCGCGCACACACGCACGCAGGCACACACACACACACACACACACACACACACACACTTTCG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  CACACACAAACACGCTAGGACGCTCGTCTTCGCTACTGCATCCCCGAACCAGCAGAGCGAAGCTACTGCGGGTT  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CTGTTAACCTCAGCATCGTGGGGCGAAGCAGAGCCATTGTGCATCAAGGAGAGGCCGGTGCCTGCGCTGCCGTC  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  TCTGGCACCTAACCCAGCAGACCGCTCACCCCATCGGCTGGAATGCTTGCTGATTCCTCTGCACACTTCTAAGG  444

Query    1  ----------------------------ATGCCGTCTGAACGCTGCCTCAGTATTCAAGAAATGCTGACAGGCC  46
                                        ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  CTGAGAACCTGAGGAACCCAGCTGGAAAATGCCGTCTGAACGCTGCCTCAGTATTCAAGAAATGCTGACAGGCC  518

Query   47  AGAGGCTCTGCCACTCCGAATCTCACAATGACAGTGTCCTGGCAGCGCTGAATCAGCAGAGGAGTGATGGCATC  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  AGAGGCTCTGCCACTCCGAATCTCACAATGACAGTGTCCTGGCAGCGCTGAATCAGCAGAGGAGTGATGGCATC  592

Query  121  CTCTGCGACATCACCCTGATTGCTGAGGAACAGAAATTCCATGCTCACAAGGCAGTCCTAGCAGCATGCAGTGA  194
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  CTCTGCGACATCACCCTGATTGCTGAGGAACAGAAATTCCATGCTCACAAGGCAGTCCTAGCAGCATGCAGTGA  666

Query  195  CTATTTCCGGGCAATGTTCAGTCTTTGTATGGTGGAAAGTGGAGCTGATGAGGTTAATTTGCACGGTGTGACCA  268
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  CTATTTCCGGGCAATGTTCAGTCTTTGTATGGTGGAAAGTGGAGCTGATGAGGTTAATTTGCACGGTGTGACCA  740

Query  269  GCCTTGGCTTAAAGCAGGCTCTGGAGTTTGCATACACAGGACAGATTTTGCTGGAGCCAGGTGTGATCCAGGAT  342
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  GCCTTGGCTTAAAGCAGGCTCTGGAGTTTGCATACACAGGACAGATTTTGCTGGAGCCAGGTGTGATCCAGGAT  814

Query  343  GTGCTAGCAGCGGGCAGTCACCTACAGCTGTTGGAGCTTCTCAATTTATGCTCCCACTATCTCATCCAGGAATT  416
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  GTGCTAGCAGCGGGCAGTCACCTACAGCTGTTGGAGCTTCTCAATTTATGCTCCCACTATCTCATCCAGGAATT  888

Query  417  AAATAGCTTTAATTACTTGGATCTGTACAGACTTGCTGACCTCTTTAACCTCACTTTGTTGGAGAAGGCAGTGA  490
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  AAATAGCTTTAATTACTTGGATCTGTACAGACTTGCTGACCTCTTTAACCTCACTTTGTTGGAGAAGGCAGTGA  962

Query  491  TCGATTTCTTAGTGAAACATCTCTCTGAACTCCTGAAGAGCCGCCCAGAAGAAGTTCTAACGCTTCCCTATTGC  564
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  TCGATTTCTTAGTGAAACATCTCTCTGAACTCCTGAAGAGCCGCCCAGAAGAAGTTCTAACGCTTCCCTATTGC  1036

Query  565  CTGCTTCAGGAGGTGCTGAAGAGCGACCGCCTGACCTCCCTGAGTGAAGAGCAGATCTGGCAG---------CT  629
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||
Sbjct 1037  CTGCTTCAGGAGGTGCTGAAGAGCGACCGCCTGACCTCCCTGAGTGAAGAGCAGATCTGGCAGGTGGAGTAACT  1110

Query  630  A-----GC----TGTGA------------GGTGGTTGGAAC---------ACAACTG--------------CCA  659
            |     ||    |.|.|            ||| ||..||||         |.||.||              |||
Sbjct 1111  AATACGGCACAATATCAGAACAGGCTAATGGT-GTATGAACCTAACCAGAATAAGTGGATAAGCCGTAGCCCCA  1183

Query  660  ----------------CTACCAGTACATGGACGAGCTCCTGCAATACA---------------TCCGCTTTGG-  701
                            ||||||.|.|||||        ||||..||||               ||    |||| 
Sbjct 1184  TGCTGCAGAGAAGGGTCTACCATTCCATGG--------CTGCTGTACAAAGGAAGCTTTATGTTC----TTGGA  1245

Query  702  --------CCT-------AAT-------GGA----TGTG---------GATACT--CTCCATA---------CA  729
                    |||       |||       |||    ||||         |||.||  |..||||         ||
Sbjct 1246  GGCAATGACCTAGACTACAATAATGACCGGATCCTTGTGCGCCATATAGATTCTTACAACATAGACACTGACCA  1319

Query  730  GTTGCCCTG-------TCCCACCCCCT---------------------------TGTCCA-------AG-----  757
            ||.|.|..|       |.|.|||..||                           ||||||       ||     
Sbjct 1320  GTGGACACGTTGTAATTTCAACCTGCTGACTGGCCAAAATGAATCTGGAGTTGCTGTCCATAATGGGAGAATAT  1393

Query  758  ------------------CAAGTGAGAC---TGCAACAGCC-----CTTGTCAACGAGGCCCTGGA-ATACCAC  804
                              |||.|..|||   ||    ||||     ||||| |.|.|||..||||| .||  |.
Sbjct 1394  ATTTAGTTGGTGGATATTCAATTTGGACAAATG----AGCCTCTGGCTTGT-ATCCAGGTACTGGATGTA--AG  1460

Query  805  CAGAGCA----------------TCTATG------CACAGCCTGT--CTGGCA---GACTCGCAGGACCAAACC  851
            |||||.|                ||||||      |||..|||.|  ||..||   ||.|.||||        |
Sbjct 1461  CAGAGAAGGCAAAGAAGAAGTATTCTATGGGCCTACACTCCCTTTTGCTTCCAATGGAATAGCAG--------C  1526

Query  852  ACGATTCCAGTCAGACACTCTGTATAT--CATTGGTGGG-----------AAA------AAGCGC-------GA  899
            |.|.||||...|||   |||..|||.|  |||      |           |||      |||.||       .|
Sbjct 1527  ATGCTTCCTTCCAG---CTCCATATTTTACAT------GCCCTAACCTTCAAACTCTTCAAGTGCCTCATCACA  1591

Query  900  GG----------TCTGCAAGGTCAAGGAACTTCGGTACTTCAATCCTGTTGATCAGGAG---AATGCTCTCATA  960
            ||          ||||.||.|.||||              |.|||   .|||.||||||   ||      ||||
Sbjct 1592  GGATTGGCACCATCTGAAAAGCCAAG--------------CCATC---ATGAACAGGAGGAAAA------CATA  1642

Query  961  GCT---GCCATTGCCAACTGG--------------AGTGAGCT---GGCTCCCATGCCTGTG-------GG---  1004
            |||   .|..|||...|||||              |||  |||   .|||.||.||.|| ||       ||   
Sbjct 1643  GCTCTGACTGTTGGATACTGGGCATGAAAAGACTCAGT--GCTCCATGCTTCCTTGTCT-TGCTTTATAGGTCT  1713

Query 1005  -----------------AAGGA---------------------------------------GCCACCATTGT--  1020
                             |||.|                                       |.||||.||.|  
Sbjct 1714  TATATTCGGATAAATTTAAGCAAAAAATGAACAATTTTCTAAAATACGTTATTGAAAACTCGTCACCCTTCTCA  1787

Query 1021  GTGGCAGTC----------ATGGGGGACTTCCTGTTTGTGGCAGGAGGGGAAGTTGAGCATGCCA---------  1075
            |||...|||          |||...|||||  |..||||||.|       .||.|.||  |||||         
Sbjct 1788  GTGTATGTCAACATTCAATATGTATGACTT--TTATTGTGGTA-------TAGCTTAG--TGCCAATTTAAGGT  1850

Query 1076  -----GTGGCC---GG----------------------ACGTGTGCT-GTGAGGACTGCCTGTCGCTATGAC--  1116
                 |||..|   ||                      ||.|.|.|| .|.||.||||.||     ||.|||  
Sbjct 1851  ATATTGTGTTCCATGGGTCTTTAGAGCATTCTTTGTACACTTTTTCTAATCAGCACTGTCT-----TAAGACAA  1919

Query 1117  -----CCCCG-CAGTAA------TTCCTGGGCAGAGATAGCACCCATGA----AAAACT---------------  1159
                 |.|.| .|||||      ||..|||.||.| ||.|||.|.||||    ||||.|               
Sbjct 1920  CATAACACTGTTAGTAAGGCAATTTATTGGACACA-ATGGCATCGATGATCTTAAAAATATATATATTCTGTAC  1992

Query 1160  ---------------------GCCGGG-------------------------AGCATTTTG------TGCTGGG  1181
                                 ||||||                         |.||||.||      ||||..|
Sbjct 1993  TTAATCCCTTTATTATTTAAAGCCGGGCTTGTAATTTTTCTTTTTAAAATTTAACATTATGCAGCCCTGCTCAG  2066

Query 1182  ----------------------------------------TGCCAT-----------GG----AGGAATACCTC  1200
                                                    ||||||           ||    |.|||||    
Sbjct 2067  TAGAGACTCACTCAGCATTATGACATCATAAATTTTTAAATGCCATATTTTATTCAAGGTGATACGAATA----  2136

Query 1201  TAT--------------------GCAGTTG----------------------------------------GGGG  1214
             ||                    |||||||                                        |||.
Sbjct 2137  -ATAATAGACATACACTGGAACAGCAGTTGTTGAAATACCCAGATTTTTCACCTTGGTTACTCTGACCTTGGGT  2209

Query 1215  CAGAAATGAAC-------TGCGCCAGGTTCTGCCTACAGTT----GAGCGAT--------ATTGCCCC------  1263
            |||||...|||       |||..|||  |.|.||.||..||    ||| |||        |||.||.|      
Sbjct 2210  CAGAACCTAACTTTACAGTGCTTCAG--TTTTCCCACCTTTTAAGGAG-GATAATTACTGATTTCCACGTTAAT  2280

Query 1264  --AAGAAGAACAAATGGACTTTTG----TTCAGTC-----CTTTGACAGATCCCTTTCATGCC-----------  1315
              || |||||||       ||.||    || ||.|     |||||..|.|   |||   ||||           
Sbjct 2281  TTAA-AAGAACA-------TTATGAGGATT-AGGCGAACACTTTGTAATA---CTT---TGCCCAAGAAAAAGA  2339

Query 1316  ---ATGCTG-----GATAT------GTGGCTGATGGTCTT-----CTTTGGATAT----CAGGTAG--------  1358
               |||.||     ||.||      ||...|.||.|||||     |.|||.| ||    ||||.||        
Sbjct 2340  AAAATGTTGTTACTGAAATTATAAGGTATTTTATTGTCTTTAGAACCTTGTA-ATTGAACAGGGAGATTATTTT  2412

Query 1359  ---------AACATACCT----------------CATGTTG----------GATT----------TATCAAA--  1385
                     ||.||..||                |||||||          ||||          |.|.|||  
Sbjct 2413  TGAAGTTTAAAAATTACTAGATAGAATTTGGAAACATGTTGTGGAATAAATGATTCTAAAAAGCATGTGAAAGA  2486

Query 1386  -ACACAC-----------------TTTC------------ATTGT---GGTATATA---TT-------------  1410
             ||||||                 ||||            .||||   |||||.||   ||             
Sbjct 2487  GACACACAATGAGGAAATAGGGAGTTTCTCAAAATCTAAACTTGTACAGGTATCTAAACTTGCCTCAAGTAACT  2560

Query 1411  --------------------------------------------------------------------------  1410
                                                                                      
Sbjct 2561  CTCAGATGTCTTATTTAAAATCATTTAGTGAAAAATGACATTTAAAGCTAAAAAATAATTTAGTTGTACTAATT  2634

Query 1411  --------------------------------------------------------------------------  1410
                                                                                      
Sbjct 2635  ATGGTACCATAAAGTGCTTTGACATAAATTTGAACCTAGAATTGGCAGTTCTAATAAAAGTTTTTCCACTTTGT  2708

Query 1411  --------------------------------------------------------------------------  1410
                                                                                      
Sbjct 2709  TAAAGGTTATGTCAATCTTGAGTGCTTGTGGAATTCTTCACCACCAATACATATTTTATTACTATCTCTTTTAA  2782

Query 1411  --------------------------------------------------------------------------  1410
                                                                                      
Sbjct 2783  TAATGCATAGGAATTCTTTTTTAGACTAGTTTTTGGGTTTGCTTTGTCTATAACAAAAAATAAATACAACAACT  2856

Query 1411  --------------------------------------------------------------------------  1410
                                                                                      
Sbjct 2857  TAATAATCACATTTGAAAACAAATTTAACAAGTATAATGTGAGTTTTTCTTTTTTCCTAACTTCCTCAGGACCT  2930

Query 1411  --------------------------------------------------------------------------  1410
                                                                                      
Sbjct 2931  AGGTCACCTTTATTAAAAGGAAGAATTCACTCTTTTTTCCTTGGCAGTTTAATCATTCAGGAATCCCTCTCTTA  3004

Query 1411  --------------------------------------------------------------------------  1410
                                                                                      
Sbjct 3005  AAGGAAATTGTTATTTTATTCATGTAACCTTTTTTTGTAATCAAAAGTGAATAAAAACGATCTTTTTGTCTTAC  3078

Query 1411  --  1410
              
Sbjct 3079  AG  3080

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