Nucleotide Global Alignment

Description

• Query: ccsbBroadEn_13226
• Subject: NM_001368052.1
• Aligned Length: 1339
• Identities: 704
• Gaps: 635

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGGCAGCCATGCTGAAGTGCGTGATGAGCGGCAGTCAGGTGAAAGTATTTGGGAAAGCAGTTCAAGCTCTATC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  ACGAATTAGTGACGAGTTCTGGCTAGACCCATCTAAAAAAGGTCTTGCTCTAAGATGTGTGAATTCTTCTCGGT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CAGCATATGGATGTGTCCTGTTCTCTCCTGTGTTTTTTCAGCATTATCAATGGTCAGCTTTAGTGAAAATGAGT  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GAAAATGAACTTGACACAACACTGCATTTAAAATGCAAATTGGGAATGAAGTCAATTTTGCCCATCTTTAGATG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  TCTGAATTCCCTTGAAAGAAATATAGAGAAGTGCAGAATATTCACCAGATCTGATAAATGCAAAGTAGTTATTC  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  AATTCTTCTACAGACATGGTATTAAAAGAACTCATAATATATGTTTTCAAGAAAGTCAGCCTTTGCAAGTTATT  444

Query    1  ------------------------------ATGATTCAACCAAGATTGCTTGCTGATGCCATTGTTCTTTTTAC  44
                                          ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  TTTGACAAGAATGTTTGTACTAATACGCTAATGATTCAACCAAGATTGCTTGCTGATGCCATTGTTCTTTTTAC  518

Query   45  ATCAAGTCAAGAGGAAGTTACTCTTGCTGTTACTCCACTGAATTTTTGCCTCAAGAGTTCTAATGAGGAATCAA  118
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  ATCAAGTCAAGAGGAAGTTACTCTTGCTGTTACTCCACTGAATTTTTGCCTCAAGAGTTCTAATGAGGAATCAA  592

Query  119  TGGATTTGAGCAATGCTGTACACAGTGAGATGTTTGTTGGCTCAGATGAGTTTGACTTCTTTCAAATTGGAATG  192
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  TGGATTTGAGCAATGCTGTACACAGTGAGATGTTTGTTGGCTCAGATGAGTTTGACTTCTTTCAAATTGGAATG  666

Query  193  GACACTGAGATAACATTTTGTTTCAAAGAATTGAAGGGAATACTGACATTTTCAGAAGCTACACATGCTCCTAT  266
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  GACACTGAGATAACATTTTGTTTCAAAGAATTGAAGGGAATACTGACATTTTCAGAAGCTACACATGCTCCTAT  740

Query  267  ATCCATTTATTTTGATTTCCCTGGGAAACCTCTGGCTTTGAGTATTGATGATATGTTAGTGGAAGCTAACTTTA  340
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  ATCCATTTATTTTGATTTCCCTGGGAAACCTCTGGCTTTGAGTATTGATGATATGTTAGTGGAAGCTAACTTTA  814

Query  341  TTTTGGCCACATTAGCTGATGAACAAAGTAGAGCATCTTCACCACAGTCACTGTGTCTTTCACAGAAACGAAAA  414
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  TTTTGGCCACATTAGCTGATGAACAAAGTAGAGCATCTTCACCACAGTCACTGTGTCTTTCACAGAAACGAAAA  888

Query  415  AGGTCAGATCTGATTGAAAAAAAGGCTGGCAAAAATGTAACTGGCCAGGCCCTGGAATGTATTTCAAAAAAAGC  488
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  AGGTCAGATCTGATTGAAAAAAAGGCTGGCAAAAATGTAACTGGCCAGGCCCTGGAATGTATTTCAAAAAAAGC  962

Query  489  AGCACCAAGAAGGCTTTATCCTAAGGAGACTCTCACAAACATATCTGCATTGGAAAACTGTGGCAGCCCTGCAA  562
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  AGCACCAAGAAGGCTTTATCCTAAGGAGACTCTCACAAACATATCTGCATTGGAAAACTGTGGCAGCCCTGCAA  1036

Query  563  TGAAAAGAGTGGATGGAGATGTCAGTGAAGTATCAGAAAGCAGTGTCAGCAACACAGAGGAAGTGCCAGGGTCT  636
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  TGAAAAGAGTGGATGGAGATGTCAGTGAAGTATCAGAAAGCAGTGTCAGCAACACAGAGGAAGTGCCAGGGTCT  1110

Query  637  CTGTGTCTCAGAAAGTTTTCTTGCATGTTCTTTGGAGCAGTTTCTTCTGACCAGCAAGAACACTTCAACCACCC  710
            ||||||||||||||                                                            
Sbjct 1111  CTGTGTCTCAGAAA------------------------------------------------------------  1124

Query  711  TTTCGACAGTCTGGCAAGAGCAAGTGACAGTGAAGAGGACATGAATAATGTGTGCTGCAGGAAAGAATTTAATG  784
                                                             |||||||||||||||||||||||||
Sbjct 1125  -------------------------------------------------GTGTGCTGCAGGAAAGAATTTAATG  1149

Query  785  GAAGTGATGCCAAATATTTCTGTATTATC---------------------------------------------  813
            |||||||||||||||||||||||||||||                                             
Sbjct 1150  GAAGTGATGCCAAATATTTCTGTATTATCTGACATAGAACAGTATCCTCCACTGCCAAGACAGCCTGAGTTTGG  1223

Query  814  -------  813
                   
Sbjct 1224  AGTGGAA  1230