Nucleotide Global Alignment

Description

• Query: ccsbBroadEn_13227
• Subject: NM_001368052.1
• Aligned Length: 1280
• Identities: 712
• Gaps: 553

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGGCAGCCATGCTGAAGTGCGTGATGAGCGGCAGTCAGGTGAAAGTATTTGGGAAAGCAGTTCAAGCTCTATC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  ACGAATTAGTGACGAGTTCTGGCTAGACCCATCTAAAAAAGGTCTTGCTCTAAGATGTGTGAATTCTTCTCGGT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CAGCATATGGATGTGTCCTGTTCTCTCCTGTGTTTTTTCAGCATTATCAATGGTCAGCTTTAGTGAAAATGAGT  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GAAAATGAACTTGACACAACACTGCATTTAAAATGCAAATTGGGAATGAAGTCAATTTTGCCCATCTTTAGATG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  TCTGAATTCCCTTGAAAGAAATATAGAGAAGTGCAGAATATTCACCAGATCTGATAAATGCAAAGTAGTTATTC  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  AATTCTTCTACAGACATGGTATTAAAAGAACTCATAATATATGTTTTCAAGAAAGTCAGCCTTTGCAAGTTATT  444

Query    1  ------------------------------ATGATTCAACCAAGATTGCTTGCTGATGCCATTGTTCTTTTTAC  44
                                          ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  TTTGACAAGAATGTTTGTACTAATACGCTAATGATTCAACCAAGATTGCTTGCTGATGCCATTGTTCTTTTTAC  518

Query   45  ATCAAGTCAAGAGGAAGTTACTCTTGCTGTTACTCCACTGAATTTTTGCCTCAAGAGTTCTAATGAGGAATCAA  118
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  ATCAAGTCAAGAGGAAGTTACTCTTGCTGTTACTCCACTGAATTTTTGCCTCAAGAGTTCTAATGAGGAATCAA  592

Query  119  TGGATTTGAGCAATGCTGTACACAGTGAGATGTTTGTTGGCTCAGATGAGTTTGACTTCTTTCAAATTGGAATG  192
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  TGGATTTGAGCAATGCTGTACACAGTGAGATGTTTGTTGGCTCAGATGAGTTTGACTTCTTTCAAATTGGAATG  666

Query  193  GACACTGAGATAACATTTTGTTTCAAAGAATTGAAGGGAATACTGACATTTTCAGAAGCTACACATGCTCCTAT  266
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  GACACTGAGATAACATTTTGTTTCAAAGAATTGAAGGGAATACTGACATTTTCAGAAGCTACACATGCTCCTAT  740

Query  267  ATCCATTTATTTTGATTTCCCTGGGAAACCTCTGGCTTTGAGTATTGATGATATGTTAGTGGAAGCTAACTTTA  340
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  ATCCATTTATTTTGATTTCCCTGGGAAACCTCTGGCTTTGAGTATTGATGATATGTTAGTGGAAGCTAACTTTA  814

Query  341  TTTTGGCCACATTAGCTGATGAACAAAGTAGAGCATCTTCACCACAGTCACTGTGTCTTTCACAGAAACGAAAA  414
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  TTTTGGCCACATTAGCTGATGAACAAAGTAGAGCATCTTCACCACAGTCACTGTGTCTTTCACAGAAACGAAAA  888

Query  415  AGGTCAGATCTGATTGAAAAAAAGGCTGGCAAAAATGTAACTGGCCAGGCCCTGGAATGTATTTCAAAAAAAGC  488
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  AGGTCAGATCTGATTGAAAAAAAGGCTGGCAAAAATGTAACTGGCCAGGCCCTGGAATGTATTTCAAAAAAAGC  962

Query  489  AGCACCAAGAAGGCTTTATCCTAAGGAGACTCTCACAAACATATCTGCATTGGAAAACTGTGGCAGCCCTGCAA  562
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  AGCACCAAGAAGGCTTTATCCTAAGGAGACTCTCACAAACATATCTGCATTGGAAAACTGTGGCAGCCCTGCAA  1036

Query  563  TGAAAAGAGTGGATGGAGATGTCAGTGAAGTATCAGAAAGCAGTGTCAGCAACACAGAGGAAGTGCCAGGGTCT  636
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  TGAAAAGAGTGGATGGAGATGTCAGTGAAGTATCAGAAAGCAGTGTCAGCAACACAGAGGAAGTGCCAGGGTCT  1110

Query  637  CTGTGTCTCAGAAAGTTTTCTTGCATG------TTCTTTGGAGCAG------------TTTCT------TCTGA  686
            ||||||||||||||||.|.| ||||.|      ||...||||  ||            |||||      |||||
Sbjct 1111  CTGTGTCTCAGAAAGTGTGC-TGCAGGAAAGAATTTAATGGA--AGTGATGCCAAATATTTCTGTATTATCTGA  1181

Query  687  CCAGCA-AGAACACT-TCAACCACCCTTTC---GACAGTCTGGCAAGAGCAAGTGACAGTGAAGAGGACATGAA  755
                || ||||||.| ||..||||   |.|   |||||.|||         |||    .||.||.|||.     
Sbjct 1182  ----CATAGAACAGTATCCTCCAC---TGCCAAGACAGCCTG---------AGT----TTGGAGTGGAA-----  1230

Query  756  TAATGGCAGTTTCTCTATATTC  777
                                  
Sbjct 1231  ----------------------  1230