Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_13272
- Subject:
- XR_001738646.2
- Aligned Length:
- 5426
- Identities:
- 1442
- Gaps:
- 3966
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GATGTTGACAGCTCAGCCCCAACAAGCTGATGACACCATGCCATGCCATCCCATGCCACGCCACCTCAATCCCC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TGTTACACAGCCAAAGGCTCAGAGGCCCATTCCAGAGTGACTGCAGTGAGGATAAAGAGATTTCCCCAGCTGCC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CGCCACTACCCCCTTTCAAAGGTGAACACAGTAAAATTTATGACAGGTGCTCTATCAGAACACAGAGGAACATA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AAAGCAGGAGGAGGTGTGATAGCCCATCCATCTGCTGGAGCAGCTCTTCCAGAGGCCCGAGTCACCTGGAGCAT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TCTGGCATGGGGCTGCGGCCAGGCATTTTCCTCCTGGAGCTGCTGCTGCTTCTGGGGCAAGGGACCCCTCAGAT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CCATACCTCTCCTAGAAAGAGTACATTGGAAGGGCAGCTATGGCCAGAGACCCTGAAGAATTCTCCATTCCCAT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GCAACCCAAATAAATTAGGAGTGAATATGCCTTCTAAATCAGTTCACTCTCTGAAGCCTTCTGATATTAAATTT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GTGGCAGCCATTGGCAATCTGGAAATTCCTCCAGACCCAGGGACGGGCGATCTGGAGAAGCAAGACTGGACTGA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 AAGGCCACAGCAGGTGTGCATGGGAGTGATGACAGTCCTTTCAGACATCATCAGATATTTCAGTCCTTCTGTTC 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 CAATGCCTGTGTGCCACACTGGAAAGAGAGTCATACCCCACGATGGTGCTGAAGACTTGTGGATTCAGGCTCAA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 GAACTGGTGAGAAACATGAAAGAGAACCTGGGAGGTGGTGGAGAGCTTCAGTTCCAGCAACTTGACTTTCAATT 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 TGACTGGAAGCTCATCAATGTGTTCTTCAGTAATGCAAGCCAGTGTTACCTGTGCCCCTCTGCTCAACAGGCAC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 CCTCACTTAGCACGGTTCTCCTCTCACAGAATGGGCTTGCGGCGGGCGGCGTGGATGAGCTGATGGGGGTGCTG 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 GACTACCTGCAGCAGGAGGTCCCCAGAGCATTTGTAAACCTGGTGGACCTCTCTGAGGTTGCAGAGGTCTCTCG 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 TCAGTATCACGGCACTTGGCTCAGCCCTGCACCAGAGCCCTGTAATTGCTCAGAGGAGACCACCCGGCTGGCCA 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 AGGTGGTGATGCAGTGGTCTTATCAGGAAGCCTGGAACAGCCTCCTGGCCTCCAGCAGGTACAGTGAGCAGGAG 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 TCCTTCACCGTGGTTTTCCAGCCTTTCTTCTATGAGACCACCCCATCTCTACACTCGGAGGACCCCCGACTCCA 1258
Query 1 ----------------------------------------ATGGAGCCAGCAGGAGAGAAAGATGAGCCATTGA 34
||||||||||||||||||||||||||||||||||
Sbjct 1259 GGATTCTACCACGCTGGCCTGGCATCTCTGGAATAGGATGATGGAGCCAGCAGGAGAGAAAGATGAGCCATTGA 1332
Query 35 GTGTAAAACACGGGAGGCCAATGAAGTGTCCCTCTCAGGAGAGCCCCTATCTGTTCAGCTACAGAAACAGCAAC 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 GTGTAAAACACGGGAGGCCAATGAAGTGTCCCTCTCAGGAGAGCCCCTATCTGTTCAGCTACAGAAACAGCAAC 1406
Query 109 TACCTGACCAGACTGCAGAAACCCCAAGACAAGCTTGAGGTAAGAGAAGGAGCGGAAATCAGATGTCCTGACAA 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 TACCTGACCAGACTGCAGAAACCCCAAGACAAGCTTGAGGTAAGAGAAGGAGCGGAAATCAGATGTCCTGACAA 1480
Query 183 AGACCCCTCCGATACGGTTCCCACCTCAGTTCATAGGCTGAAGCCGGCTGACATCAACGTAATTGGAGCCCTGG 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 AGACCCCTCCGATACGGTTCCCACCTCAGTTCATAGGCTGAAGCCGGCTGACATCAACGTAATTGGAGCCCTGG 1554
Query 257 GTGACTCTCTCACGGCAGGCAATGGGGCCGGGTCCACACCTGGGAACGTCTTGGACGTCTTGACTCAGTACCGA 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 GTGACTCTCTCACGGCAGGCAATGGGGCCGGGTCCACACCTGGGAACGTCTTGGACGTCTTGACTCAGTACCGA 1628
Query 331 GGCCTGTCCTGGAGCGTCGGCGGAGATGAGAACATCGGCACCGTTACCACCCTGGCGAACATCCTCCGGGAATT 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 GGCCTGTCCTGGAGCGTCGGCGGAGATGAGAACATCGGCACCGTTACCACCCTGGCGAACATCCTCCGGGAATT 1702
Query 405 CAACCCTTCCCTGAAGGGCTTCTCTGTTGGCACTGGGAAAGAAACCAGTCCTAATGCCTTCTTAAACCAGGCTG 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 CAACCCTTCCCTGAAGGGCTTCTCTGTTGGCACTGGGAAAGAAACCAGTCCTAATGCCTTCTTAAACCAGGCTG 1776
Query 479 TGGCAGGAGGCCGAGCTGAGGATCTACCTGTCCAGGCCAGGAGGCTGGTGGACCTGATGAAGAATGACACGAGG 552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777 TGGCAGGAGGCCGAGCTGAGGATCTACCTGTCCAGGCCAGGAGGCTGGTGGACCTGATGAAGAATGACACGAGG 1850
Query 553 ATACACTTTCAGGAAGACTGGAAGATAATAACCCTGTTTATAGGCGGCAATGACCTCTGTGATTTCTGCAATGA 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851 ATACACTTTCAGGAAGACTGGAAGATAATAACCCTGTTTATAGGCGGCAATGACCTCTGTGATTTCTGCAATGA 1924
Query 627 TCTGGTCCACTATTCTCCCCAGAACTTCACAGACAACATTGGAAAGGCCCTGGACATCCTCCATGCTGAGGTTC 700
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925 TCTGGTCCACTATTCTCCCCAGAACTTCACAGACAACATTGGAAAGGCCCTGGACATCCTCCATGCTGAGGTTC 1998
Query 701 CTCGGGCATTTGTGAACCTGGTGACGGTGCTTGAGATCGTCAACCTGAGGGAGCTGTACCAGGAGAAAAAAGTC 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999 CTCGGGCATTTGTGAACCTGGTGACGGTGCTTGAGATCGTCAACCTGAGGGAGCTGTACCAGGAGAAAAAAGTC 2072
Query 775 TACTGCCCAAGGATGATCCTCAGGTCTCTGTGTCCCTGTGTCCTGAAGTTTGATGATAACTCAACAGAACTTGC 848
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073 TACTGCCCAAGGATGATCCTCAGGTCTCTGTGTCCCTGTGTCCTGAAGTTTGATGATAACTCAACAGAACTTGC 2146
Query 849 TACCCTCATCGAATTCAACAAGAAGTTTCAGGAGAAGACCCACCAACTGATTGAGAGTGGGCGATATGACACAA 922
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2147 TACCCTCATCGAATTCAACAAGAAGTTTCAGGAGAAGACCCACCAACTGATTGAGAGTGGGCGATATGACACAA 2220
Query 923 GGGAAGATTTTACTGTGGTTGTGCAGCCGTTCTTTGAAAACGTGGACATGCCAAAGACCTCGGAAGGATTGCCT 996
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2221 GGGAAGATTTTACTGTGGTTGTGCAGCCGTTCTTTGAAAACGTGGACATGCCAAAGACCTCGGAAGGATTGCCT 2294
Query 997 GACAACTCTTTCTTCGCTCCTGACTGTTTCCACTTCAGCAGCAAGTCTCACTCCCGAGCAGCCAGTGCTCTCTG 1070
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2295 GACAACTCTTTCTTCGCTCCTGACTGTTTCCACTTCAGCAGCAAGTCTCACTCCCGAGCAGCCAGTGCTCTCTG 2368
Query 1071 GAACAATATGCTGGAGCCTGTTGGCCAGAAGACGACTCGTCATAAGTTTGAAAACAAGATCAATATCACATGTC 1144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2369 GAACAATATGCTGGAGCCTGTTGGCCAGAAGACGACTCGTCATAAGTTTGAAAACAAGATCAATATCACATGTC 2442
Query 1145 CGAACCAGGTCCAGCCGTTTCTGAGGACCTACAAGAACAGCATGCAGGGTCATGGGACCTGGCTGCCATGCAGG 1218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2443 CGAACCAGGTCCAGCCGTTTCTGAGGACCTACAAGAACAGCATGCAGGGTCATGGGACCTGGCTGCCATGCAGG 2516
Query 1219 GACAGAGCCCCTTCTGCCTTGCACCCTACCTCAGTGCATGCCCTGAGACCTGCAGACATCCAAGTTGTGGCTGC 1292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2517 GACAGAGCCCCTTCTGCCTTGCACCCTACCTCAGTGCATGCCCTGAGACCTGCAGACATCCAAGTTGTGGCTGC 2590
Query 1293 TCTGGGGGATTCTCTGACCGCTGGCAATGGAATTGGCTCCAAACCAGACGACCTCCCCGATGTCACCACACAGT 1366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2591 TCTGGGGGATTCTCTGACCGCTGGCAATGGAATTGGCTCCAAACCAGACGACCTCCCCGATGTCACCACACAGT 2664
Query 1367 ATCGGGGACTGTCATACA-----------------------GAGAAAGTAAACCA------------------G 1399
|||||||||||||||||| |||||.|| .|||| |
Sbjct 2665 ATCGGGGACTGTCATACAGTGCAGGAGGGGACGGCTCCCTGGAGAATGT-GACCACCTTACCTAATATCCTTCG 2737
Query 1400 GGTTCTTATCAGACTCCT---------------------GGGTCA-GCAAATCCAACAGGAAATGCA--CCAGA 1449
||...|||.||||..||| ||||.| ||.||| .|||.| |||||| ||..|
Sbjct 2738 GGAGTTTAACAGAAACCTCACAGGCTACGCCGTGGGCACGGGTGATGCCAAT--GACACG-AATGCATTCCTCA 2808
Query 1450 A--AAGC---------ACCAAATCCC------------------------------------------------ 1464
| |||| |.||||..|.
Sbjct 2809 ATCAAGCTGTTCCCGGAGCAAAGGCTGAGGATCTTATGAGCCAAGTCCAAACTCTGATGCAGAAGATGAAAGAT 2882
Query 1465 -------------------------------------------------------------------------- 1464
Sbjct 2883 GATCATAGAGTAAATTTCCATGAAGACTGGAAGGTCATCACAGTGCTGATCGGAGGCAGCGATTTATGTGACTA 2956
Query 1465 -------------------------------------------------------------------------- 1464
Sbjct 2957 CTGCACAGATTCGAATCTGTATTCTGCAGCCAACTTTGTTCACCATCTCCGCAATGCCTTGGACGTCCTGCATA 3030
Query 1465 -------------------------------------------------------------------------- 1464
Sbjct 3031 GAGAGGTGCCCAGAGTCCTGGTCAACCTCGTGGACTTCCTGAACCCCACTATCATGCGGCAGGTGTTCCTGGGA 3104
Query 1465 -------------------------------------------------------------------------- 1464
Sbjct 3105 AACCCAGACAAGTGCCCAGTGCAGCAGGCCAGCGTTTTGTGTAACTGCGTTCTGACCCTGCGGGAGAACTCCCA 3178
Query 1465 -------------------------------------------------------------------------- 1464
Sbjct 3179 AGAGCTAGCCAGGCTGGAGGCCTTCAGCCGAGCCTACCGGAGCAGCATGCGCGAGCTGGTGGGGTCAGGCCGCT 3252
Query 1465 -------------------------------------------------------------------------- 1464
Sbjct 3253 ATGACACGCAGGAGGACTTCTCTGTGGTGCTGCAGCCCTTCTTCCAGAACATCCAGCTCCCTGTCCTGGCGGAT 3326
Query 1465 -------------------------------------------------------------------------- 1464
Sbjct 3327 GGGCTCCCAGATACGTCCTTCTTTGCCCCAGACTGCATCCACCCAAATCAGAAATTCCACTCCCAGCTGGCCAG 3400
Query 1465 -------------------------------------------------------------------------- 1464
Sbjct 3401 AGCCCTTTGGACCAATATGCTTGAACCACTTGGAAGCAAAACAGAGACCCTGGACCTGAGAGCAGAGATGCCCA 3474
Query 1465 -------------------------------------------------------------------------- 1464
Sbjct 3475 TCACCTGTCCCACTCAGAATGAGCCCTTCCTGAGAACCCCTCGGAATAGTAACTACACGTACCCCATCAAGCCA 3548
Query 1465 -------------------------------------------------------------------------- 1464
Sbjct 3549 GCCATTGAGAACTGGGGCAGTGACTTCCTGTGTACAGAGTGGAAGGCTTCCAATAGTGTTCCAACCTCTGTCCA 3622
Query 1465 -------------------------------------------------------------------------- 1464
Sbjct 3623 CCAGCTCCGACCAGCAGACATCAAAGTGGTGGCCGCCCTGGGTGACTCTCTGACTACAGCAGTGGGAGCTCGAC 3696
Query 1465 -------------------------------------------------------------------------- 1464
Sbjct 3697 CAAACAACTCCAGTGACCTACCCACATCTTGGAGGGGACTCTCTTGGAGACATTCTGAAGAAGTTCAACCCTTA 3770
Query 1465 -------------------------------------------------------------------------- 1464
Sbjct 3771 CCTCCTTGGCTTCTCTACCAGCACCTGGGAGGGGACAGCAGGACTAAATGTGGCAGCGGAAGGGGCCAGAGCTA 3844
Query 1465 -------------------------------------------------------------------------- 1464
Sbjct 3845 GGGACATGCCAGCCCAGGCCTGGGACCTGGTAGAGCGAATGAAAAACAGCCCCGACATCAACCTGGAGAAAGAC 3918
Query 1465 -------------------------------------------------------------------------- 1464
Sbjct 3919 TGGAAGCTGGTCACACTCTTCATTGGGGTCAACGACTTGTGTCATTACTGTGAGAATCCGGAGGCCCACTTGGC 3992
Query 1465 -------------------------------------------------------------------------- 1464
Sbjct 3993 CACGGAATATGTTCAGCACATCCAACAGGCCCTGGACATCCTCTCTGAGGAGCTCCCAAGGGCTTTCGTCAACG 4066
Query 1465 -------------------------------------------------------------------------- 1464
Sbjct 4067 TGGTGGAGGTCATGGAGCTGGCTAGCCTGTACCAGGGCCAAGGCGGGAAATGTGCCATGCTGGCAGCTCAGAAC 4140
Query 1465 -------------------------------------------------------------------------- 1464
Sbjct 4141 AACTGCACTTGCCTCAGACACTCGCAAAGCTCCCTGGAGAAGCAAGAACTGAAGAAAGTGAACTGGAACCTCCA 4214
Query 1465 -------------------------------------------------------------------------- 1464
Sbjct 4215 GCATGGCATCTCCAGTTTCTCCTACTGGCACCAATACACACAGCGTGAGGACTTTGCGGTTGTGGTGCAGCCTT 4288
Query 1465 -------------------------------------------------------------------------- 1464
Sbjct 4289 TCTTCCAAAACACACTCACCCCACTGAACGAGAGAGGGGACACTGACCTCACCTTCTTCTCCGAGGACTGTTTT 4362
Query 1465 -------------------------------------------------------------------------- 1464
Sbjct 4363 CACTTCTCAGACCGCGGGCATGCCGAGATGGCCATCGCACTCTGGAACAACATGCTGGAACCAGTGGGCCGCAA 4436
Query 1465 -------------------------------------------------------------------------- 1464
Sbjct 4437 GACTACCTCCAACAACTTCACCCACAGCCGAGCCAAACTCAAGTGCCCCTCTCCTGAGAGCCCTTACCTCTACA 4510
Query 1465 -------------------------------------------------------------------------- 1464
Sbjct 4511 CCCTGCGGAACAGCCGATTGCTCCCAGACCAGGCTGAAGAAGCCCCCGAGGTGCTCTACTGGGCTGTCCCAGTG 4584
Query 1465 -------------------------------------------------------------------------- 1464
Sbjct 4585 GCAGCGGGAGTCGGCCTTGTGGTGGGCATCATCGGGACAGTGGTCTGGAGGTGCAGGAGAGGTGGCCGGAGGGA 4658
Query 1465 -------------------------------------------------------------------------- 1464
Sbjct 4659 AGATCCTCCAATGAGCCTGCGCACTGTGGCCCTCTAGGCCCGGGGGTGGGTCCTCACCCTAAACTCCCTATAGC 4732
Query 1465 -------------------------------------------------------------------------- 1464
Sbjct 4733 CACTCTCTTCACCGCCCTCTGCCCCAGCCACTCCCGGCCACCAGGACATGCTTCAATGCCTGGTGCCATAGGAA 4806
Query 1465 -------------------------------------------------------------------------- 1464
Sbjct 4807 GCCCAGGGGACAGTCACAACTTCTTGGGGCCTGGGCTTCTTCCAGGCCTATGCTCCTGGAATGGATACATTTAA 4880
Query 1465 -------------------------------------------------------------------------- 1464
Sbjct 4881 ATAAAGTCCAAAGCTATTTTATTCCTGGGTTTGCCTGCGTGAAGCACTCACCTTCCATCTCTTGTGCAGCCCAG 4954
Query 1465 -------------------------------------------------------------------------- 1464
Sbjct 4955 GTGTGGGAGCTGCCACTTTTTGTGGCCTGCCTCCAGCAGGGCTGCCCAAGCCACGACCAACCAGAGCCCAAACT 5028
Query 1465 -------------------------------------------------------------------------- 1464
Sbjct 5029 GCCTGCCACCACGAGCATATCCTCAAGTCACCAAACCCACTATTTCAAAGGCAGAAAAAATGCTGGTCACCAGG 5102
Query 1465 -------------------------------------------------------------------------- 1464
Sbjct 5103 TGGTGGCTGGAATTTTGGAGCTGGCTGGTTGCCATTCAGTCCAATCCAACACATACCTATTAAGCAACTGTTTT 5176
Query 1465 -------------------------------------------------------------------------- 1464
Sbjct 5177 GTATCCAGGACAATGCGAAGCACTGAGGTGCCTCCTAGGCTGTGCATGTCGCAGCCTGGCAGAGAGGTCAAACT 5250
Query 1465 -------------------------------------------------------------------------- 1464
Sbjct 5251 CCTTCAATAACCAAGAAGCCACGTGATGATGTGTAACTACTAGGGCATCAGTAGGTAAATGTGTCTGATTGTTT 5324
Query 1465 -------------------------------------------------------------------------- 1464
Sbjct 5325 TAAAGAATAGAAAGGGTTCTTCGGGGAAAGTTTCTTGGGGGAGAGCAACCTTCACATGTCATTTTGGGAAAAGG 5398
Query 1465 ------------------------ 1464
Sbjct 5399 AATAAAAAATGATTGGGACACAAA 5422
