Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_13274
Subject:
NR_024523.1
Aligned Length:
2697
Identities:
679
Gaps:
1986

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  AGCCTGGGCTGCGCCATTGTTGGGGGAGGGGCGGCTGCTGAGGGCGGCGAGTAGGGGGCTAGAGAAGGCGCCAG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CCCCGGCCCAGAGGAGCAGAGACGCCCCATGGGGAACACGCTGACCTATTGCGTGTCCCCCCAGTACCAGCCTC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  AAGCTGGGCCGGTGCGTGGTGCCAGAGCTGTACTGCGCAACCGACATCTACGAGGCGGCACCCGGGGATGCGGT  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GGCGGTAGCGCCCGCTTCTGTGGAGCCTACCAGTTGGATTTCGCAGCGGGCGAGGGCCACCACCTGCAGCACAT  296

Query    1  -------------ATGCCCGAAGATTTAGCTTTGGAGTCAAACCCTTCTGACCATCCAAGGGCAAGCACAATTT  61
                         ||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||.||
Sbjct  297  CAGCGACCACGAGATGCCCTAAGATTTAGCTTTGGAGTCAAACCCTTCTGACCATCCAAGGGCAAGCACAAGTT  370

Query   62  TCCTGAGCAAATCTCAAACGGATGTGCGAGAAAAGAGGAAGAGCAACCATTTGAACCAT---------------  120
            |||||||||||||||||||.|||||||||||.|||||||||||||||||.||.||.|||               
Sbjct  371  TCCTGAGCAAATCTCAAACCGATGTGCGAGACAAGAGGAAGAGCAACCACTTAAATCATCTATCTCCAGGGCAG  444

Query  121  --------------------------------------------------------------------------  120
                                                                                      
Sbjct  445  CTTACTAAAAAGTATAGCTCATGCTCAACAATATTTCTAGGTGACAGAACAGTCAGCCAGCCTAACCTTAGAAC  518

Query  121  ----------TGTGACCTTAGCAATATATTACCACATAAAGAACAG----------------------------  156
                      |||||||||||.||||||||||||||||||||||||                            
Sbjct  519  CACAGTAAAATGTGACCTTAGAAATATATTACCACATAAAGAACAGAGATGCAAACAGATCCCTGGATATTTTT  592

Query  157  ------------------------CGAGAAAAAGTTCCAGAGGAATACTTTAAGCATGATCCTGAGCACAAATT  206
                                    |||||||||||||||.|||||||.||||||||||||||||||||||||||
Sbjct  593  GATGAGAGATCACATCCCCTCACACGAGAAAAAGTTCCACAGGAATAGTTTAAGCATGATCCTGAGCACAAATT  666

Query  207  TATTTACAGATTTGTTCGTACTCTTTTTAGTGCTGCACAGCTAACAGCTGAATGTGCAATAGTAACTTTGGTTT  280
            |||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||.|||||||.||||||
Sbjct  667  TATTTACAGATTTGTTCATACTCTTTTTAGTGCTGCACAGCTAACAGCTGAATGTGCAACAGTAACTCTGGTTT  740

Query  281  ACTTAGAAAGGCTTTTAACTTATGCTGAAATCGACATTTGTCCCACCAACTGGAAAAGGATTGTTCTGGGAGCC  354
            ||||||||||||||||||||||||||||||||||||||||.|||||.||||.||||||||||||||||||||||
Sbjct  741  ACTTAGAAAGGCTTTTAACTTATGCTGAAATCGACATTTGCCCCACTAACTAGAAAAGGATTGTTCTGGGAGCC  814

Query  355  ATTCTTCTTGCCTCCAAGGTTTGGGACGATCAGGCTGTATGGAATGTGGACTACTGCCAGATCCTCAAGGACAT  428
            |.||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  ACTCTTCTTGCCTCCAAGGTTTGGGATGATCAGGCTGTATGGAATGTGGACTACTGCCAGATCCTCAAGGACAT  888

Query  429  TACAGTTGAGGACATGAATGAAATGGAAAGGCATTTTCTGGAGCTTCTTCAGTTTAATATTAATGTTCCTGCCA  502
            |||||||||||||||||||||||||||||||||||||..|||||||||||||||||||||||||||||||||.|
Sbjct  889  TACAGTTGAGGACATGAATGAAATGGAAAGGCATTTTTCGGAGCTTCTTCAGTTTAATATTAATGTTCCTGCTA  962

Query  503  GTGTTTATGCCAAATACTACTTTGACCTTCGCTCCTTAGCAGATGACAACAACCTGAATTTTCTATTTGCTCCT  576
            ||||||||||||||.|||||.||||||.|||||||||||||||||   ||.|||||||||||||||||||||||
Sbjct  963  GTGTTTATGCCAAACACTACCTTGACCATCGCTCCTTAGCAGATG---ACCACCTGAATTTTCTATTTGCTCCT  1033

Query  577  CTTAGCAAAGAAAGAGCACAGAACCTAGAGGCTATTTCTAGATTGTGTGAAGACAAAGACTTGTGTAGAGCCGC  650
            ||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||.||||.||
Sbjct 1034  CTTAGCAAAGAAAGAGCACAGAACCTAGAGGCTATTTCTAGATTATGTGAAGACAAAGACTTGTGTGGAGCAGC  1107

Query  651  TATGAGAAGGTCTTTCAGTGCTGAT-AACTTCATTGGTATTCAGCGCTCTAAAGCCATCCTCTCT---------  714
            |.|.||||||||||||||.|||||| |||||||||||||||||||.|||||||||||||||||||         
Sbjct 1108  TGTAAGAAGGTCTTTCAGCGCTGATCAACTTCATTGGTATTCAGCACTCTAAAGCCATCCTCTCTTAAAGGGAG  1181

Query  715  --------------------------------------------------------------------------  714
                                                                                      
Sbjct 1182  AAATGAGGGGTTATAATGTCACGGGACCTTCATCTACAAAGACTGGAGAAATACCACCTTTCCTGCTCAAAAAC  1255

Query  715  --------------------------------------------------------------------------  714
                                                                                      
Sbjct 1256  CAGCAAAATTAGTGTTTTCATCAAAAGGAAAGATCTCAAATTCAAGAGACGCACGGACAACAAGGATCATACTC  1329

Query  715  --------------------------------------------------------------------------  714
                                                                                      
Sbjct 1330  CATAGAAAAGAATGGGACCTTGTCAATGCAACAAAACACTCTTCTGTCCTTTTTAATGTAAACAGAGTCACCAA  1403

Query  715  --------------------------------------------------------------------------  714
                                                                                      
Sbjct 1404  AACCACTCCAAAGTGAAGGCTCCCATCCCACACACAGATATTTGCTTACAATGTGGGCCAGTAACTGAACTATG  1477

Query  715  --------------------------------------------------------------------------  714
                                                                                      
Sbjct 1478  TTAGGTTTTTTAAACAATAGTTTAAATTTTTAGACTTTAAAGACATTAACCATATAACTTTTATGTTTCTTCCA  1551

Query  715  --------------------------------------------------------------------------  714
                                                                                      
Sbjct 1552  GTTTTTCTCCCCCTGCTCATTTTGCTGCATATGCCTTTAGAATCAATGCAGTATTGCCCTTAAAACAAGGGACT  1625

Query  715  --------------------------------------------------------------------------  714
                                                                                      
Sbjct 1626  CTAACTAAAGCCACTTAGGAGCAGACTGCAGCATTGTTAGGTATTGAAGGGTTCTTCCTCCCTACTGTTACCAT  1699

Query  715  --------------------------------------------------------------------------  714
                                                                                      
Sbjct 1700  TAAAGCTGCTAGTCATTGGCAATCATTTTAAACCAAAAAGCTGATGGATAACATTTGTCATTCATATTCTTTGC  1773

Query  715  --------------------------------------------------------------------------  714
                                                                                      
Sbjct 1774  AAGCATTACTTTAGCATTTTAGCATGTCTGCGGTCATAAACAAAGGAAGTATCAGTTATGATATCTACTTCTAT  1847

Query  715  --------------------------------------------------------------------------  714
                                                                                      
Sbjct 1848  TGGGGTCCATGTTGCATTTCTTGTGAACTATAAATGGTACTTCTCATTTTCTGATAATTTTTATCTTATTAAAT  1921

Query  715  --------------------------------------------------------------------------  714
                                                                                      
Sbjct 1922  AAATGTATTAAAAGATATTTTCATAATGCCAATGAACATGGTGGTTCAGTGACAGTGAAAAAAAAGTAAAGCAG  1995

Query  715  --------------------------------------------------------------------------  714
                                                                                      
Sbjct 1996  TTTTAAGCTTTAATATAGTTTGGGCCCTCCAAGGTACTGCAGCAGGAGTATAAATGCTATAAACCTTTGAAAAA  2069

Query  715  --------------------------------------------------------------------------  714
                                                                                      
Sbjct 2070  CATCATTTGAGAGTTTTGTTTTTTTTCTTTAAGAGATGGGGGTCTTGCTGTGTTGTCCAGGCTGGAGTATGGTG  2143

Query  715  --------------------------------------------------------------------------  714
                                                                                      
Sbjct 2144  GCTGTTCACCAGTGCAGTCATGGTGCACTGCAGCCTAGAACTTCCTGGCTTCGCGCCATCCTCTAGCCTCGGCC  2217

Query  715  --------------------------------------------------------------------------  714
                                                                                      
Sbjct 2218  ACACGAGTGGCTGGGACTGCAGGCGCACCCTGCATTTGTCTCCTGAATGTTAGGCTTTTGATTTTTTGTTTCAG  2291

Query  715  --------------------------------------------------------------------------  714
                                                                                      
Sbjct 2292  TCACTCTTGAAGTCACTCTTGACTGAAGCAAAAAATTAAAAGCTTTATATTCAAAATTCTCAAAATGAAGCTGG  2365

Query  715  --------------------------------------------------------------------------  714
                                                                                      
Sbjct 2366  GTGTGGTGGTGCACACCTGAGGTTCCAGCTACTTGGGTGGCTGGAGGATTGCTTGGGGTCAGGTATTGGAGGCT  2439

Query  715  --------------------------------------------------------------------------  714
                                                                                      
Sbjct 2440  GCAGTGTATCGTGATGGTGCCTATAGAAATAGCTACTGCACTTCAACCTGGACAACATATCGGGACCCCATCTC  2513

Query  715  --------------------------------------------------------------------------  714
                                                                                      
Sbjct 2514  TTAGAAAAATGCAAAATTAAATGCAAAAGAAATGCACCGGGCATAGTGATTCATGCCTATAATCTCAGTACTTT  2587

Query  715  --------------------------------------------------------------------------  714
                                                                                      
Sbjct 2588  GGGAGGCTGAGGTGGGAGGATTACTTGAGCGCAGCAGTTCAAGACCAGTCTAGTCAACACAGTGAGCCCCTGTC  2661

Query  715  ---------------------------------  714
                                             
Sbjct 2662  TGTAAAAAATAATAATAAATAAAAATAATTAGC  2694

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