Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_13280
- Subject:
- XR_002959492.1
- Aligned Length:
- 3960
- Identities:
- 1479
- Gaps:
- 2459
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TGGCTGGAAAATCACAGCTGATGACAGGGCGAGTAGCTGGTGGGATCGAGAAGCGGGGGGTCTTGGGCAGCCCC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 ACCCCGAAAAAAGGGCTCAGCCTGCGGGTTCAGGGGGTGGGTCGCAGATATCCGGTAGGAGCTCGGCCCCAGGA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GGACAAAGTTCTGGGGCGAGCCCTCTTTCCTGGGCCCTTGGAGACAGTGTGGGTGCGTTCGCGTCCAGTCCGCA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GAGCCATGGTTCCTGGACAGCGATTTCCGGTGCTGTCCAGAGTGCTGACAGAGCGGACCCCGGCTGGGGGTAGC 296
Query 1 ------------------------------ATGTCTCTCGGCGGAGC----CTCCGAG------CGCAGCGTCC 34
|||.|||||..|.|.|| |||.||| ||..||| ..
Sbjct 297 CATGGGGGACAGAGGTTCGATGCGGGCCCCATGCCTCTCCTCAGTGCCCGGCTCAGAGCCGACTCGAGGCG-GG 369
Query 35 CGGCCACCAAGATTGAAATT--ACCGTGTCCTGCC---------------GGAACCTGCTAGACCTTGATACCT 91
|||.|.|||.|| ||| | ||..||| |||.| ||||||||||||||||||||||||
Sbjct 370 CGGACTCCAGGA-TGA---TCCACTCTGT-CTGTCTGTTGCTTTTCTCTAGGAACCTGCTAGACCTTGATACCT 438
Query 92 TCTCCAAGTCCGACCCCATGGTGGTGCTTTACACGCAGAGCCGGGCCAGCCAGGAGTGGCGGGAGTTCGGACGG 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 439 TCTCCAAGTCCGACCCCATGGTGGTGCTTTACACGCAGAGCCGGGCCAGCCAGGAGTGGCGGGAGTTCGGACGG 512
Query 166 ACCGAGGTGATTGATAACACGCTGAACCCAGACTTCGTGCGCAAATTCGTCCTCGACTATTTCTTTGAGGAAAA 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 513 ACCGAGGTGATTGATAACACGCTGAACCCAGACTTCGTGCGCAAATTCGTCCTCGACTATTTCTTTGAGGAAAA 586
Query 240 GCAAAATCTGCGCTTCGATGTGTACAACGTGGACTCCAAAACCAACATCTCCAAACCGAAGGATTTCCTGGGAC 313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 587 GCAAAATCTGCGCTTCGATGTGTACAACGTGGACTCCAAAACCAACATCTCCAAACCGAAGGATTTCCTGGGAC 660
Query 314 AAGCGTTCCTGGCCCTGGGAGAGGTGATTGGAGGCCAGGGCAGCCGAGTAGAGCGAACCCTCACGGGTGTACCA 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 AAGCGTTCCTGGCCCTGGGAGAGGTGATTGGAGGCCAGGGCAGCCGAGTAGAGCGAACCCTCACGGGTGTACCA 734
Query 388 GGCAAGAAGTGTGGGACCATATTGCTGACTGCAGAAGAGCTTAGCAATTGTCGGGACATTGCCACCATGCAGCT 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 735 GGCAAGAAGTGTGGGACCATATTGCTGACTGCAGAAGAGCTTAGCAATTGTCGGGACATTGCCACCATGCAGCT 808
Query 462 GTGTGCAAACAAGCTGGACAAGAAGGACTTCTTTGGGAAATCAGACCCCTTCCTTGTGTTCTACAGGAGCAATG 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 809 GTGTGCAAACAAGCTGGACAAGAAGGACTTCTTTGGGAAATCAGACCCCTTCCTTGTGTTCTACAGGAGCAATG 882
Query 536 AGGATGGCACGTTCACCATCTGCCACAAGACAGAGGTTGTGAAAAACACGCTGAATCCTGTGTGGCAGCCCTTC 609
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 883 AGGATGGCACGTTCACCATCTGCCACAAGACAGAGGTTGTGAAAAACACGCTGAATCCTGTGTGGCAGCCCTTC 956
Query 610 AGCATCCCTGTGCGGGCTCTGTGCAATGGAGACTATGACAGAACGGTGAAGATTGATGTGTACGACTGGGACCG 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 AGCATCCCTGTGCGGGCTCTGTGCAATGGAGACTATGACAGAACGGTGAAGATTGATGTGTACGACTGGGACCG 1030
Query 684 GGATGGA------------------------------------------------------------------- 690
|||||||
Sbjct 1031 GGATGGAAGGTAGAACTGCCCCACATGGTCCCTTCTCCTGTACTTGACCCAAGCAGTTCTCAATAATATGTTGT 1104
Query 691 -------------------------------------------------------------------------- 690
Sbjct 1105 ACATTCACTGAGAACCCCAAAGTAGCTTTAGGAGCCAGGAAAGGTGATGATAAACACCAGTGTCTTGGGTACAA 1178
Query 691 -------------------------------------------------------------------------- 690
Sbjct 1179 CTGATCCCCCCAATTGTCTCTCTGGACACTGTCTCTTCCCGTTTTTCCCCTATGTTTGGCCTCCCTTATGGCCC 1252
Query 691 -------------------------------------------------------------------------- 690
Sbjct 1253 CAGCACTAGGCTGCCCTGCAGCCTAAGTAGGGGCTTAGGATAGGAGGAATAAAAGACTGGGTTCAGCTCTGGTT 1326
Query 691 --------------------------------------------AGCCACGATTTCATTGGTGAGTTCACCACC 720
||||||||||||||||||||||||||||||
Sbjct 1327 CCAAACCAGCAGCACCTGCTGCTTAGCCACGCCCACCTCATTGCAGCCACGATTTCATTGGTGAGTTCACCACC 1400
Query 721 AGCTACCGGGAGCTGAGCAAGGCCCAGAACCAGTTCACAGTATATGAGGTTCTTAACCCTCGGAAGAAATGTAA 794
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1401 AGCTACCGGGAGCTGAGCAAGGCCCAGAACCAGTTCACAGTATATGAGGTTCTTAACCCTCGGAAGAAATGTAA 1474
Query 795 GAAGAAGAAATATGTCAACTCAGGAACT---------------------------------------------- 822
||||||||||||||||||||||||||||
Sbjct 1475 GAAGAAGAAATATGTCAACTCAGGAACTGTGAGTGCTCCCTAGAGCCGTGGCCCTCCCTGGATCCTTCCGTGTC 1548
Query 823 -------------------------------------------------------------------------- 822
Sbjct 1549 TGTCCCCATTGACACAGCATGGCAAATATCGAGGGCAGGGCAAGACAGTGGGCACAGATTACTTGGAATAGTAA 1622
Query 823 -------------------------------------------------------------------------- 822
Sbjct 1623 TATTGGGCACAAGGAGCACCACTTAAGTTTTTCTTTGTTTTTTTTCTCACTCAGGAAATTTTTCTGACTTCACT 1696
Query 823 -------------------------------------------------------------------------- 822
Sbjct 1697 CTTTTGCAGAATAAAAGAAAAAAACCTAAGTTGTATTTCCCAATTTAATATACTTTTGGAAATCCAACGATGTT 1770
Query 823 -------------------------------------------------------------------------- 822
Sbjct 1771 TCTGACAGCTTCCCCTTTTCCCCTGTCAGAAGTTGAACAGGGTGGGACTGACTGGGGGAGCGGGTGGAATCATG 1844
Query 823 -------------------------------------------------------------------------- 822
Sbjct 1845 TGCCTCCCATCACGTGCCTCTTTCCAAGCCCCTATGGGCCTCACTTCCTTCTGCCACCCCAACTGCCTTTTCCA 1918
Query 823 -------------------------------GTGACGCTGCTCTCCTTCTCTGTGGACTCTGAATTCACTTTTG 865
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 1919 AAGTGCCAGGGCTGCCTATTCTGTCCCACAGGTGACGCTGCTCTCCTTCTCTGTGGACTCTGAATTCACTTTTG 1992
Query 866 TTGATTACATCAAGGGAGGGACACAGCTGAACTTCACAGTAGCCATTGACTTCACGGCTTCCAAT--------- 930
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1993 TTGATTACATCAAGGGAGGGACACAGCTGAACTTCACAGTAGCCATTGACTTCACGGCTTCCAATGGTGAGACA 2066
Query 931 -------------------------------------------------------------------------- 930
Sbjct 2067 CGGATGAGTGAAAAAGTCGGAGGTGGGAAGGCACTTCTAAGGGAGTCATTAGGAGTTGGCCTGGATTCCTACCT 2140
Query 931 -------------------------------------------------------------------------- 930
Sbjct 2141 AGAGATAAGAGTTTACCTACCCAAGAAGCCCAAACTTAGGCAAAACCCAGCCAGGAAAATAGAGTGCAGAAAAA 2214
Query 931 -------------------------------------------------------------------------- 930
Sbjct 2215 TAGATGGGTAGATGGATCATAGAGGGTTGAAAGGATATATAGCTCAACAGGTGGATGAGTAGGCTGATGGATGA 2288
Query 931 -------------------------------------------------------------------------- 930
Sbjct 2289 GAGAGAAAGGGGGTATAAGGAGAGATGGAGAGGTGAACAGGTGGTGAGTCATGAATGGATGCATAGATCCATGA 2362
Query 931 -------------------------------------------------------------------------- 930
Sbjct 2363 ACAAATGGAGTGGGTACATGGGTTGGTGAGTATAATAGGTTAGACAAGTAGATGCATCGATGGGTATGTGGGTG 2436
Query 931 -------------------------------------------------------------------------- 930
Sbjct 2437 GACAAATGGACTAAAGTTTAAGTTGGGGAAATAACAAGTAATTAGGGGAAATGCATGAGTGGATAGATCCATAT 2510
Query 931 -------------------------------------------------------------------------- 930
Sbjct 2511 GAGAATAGACAAGGGAATGAATGGAATGGAGAGGGCTGGCTAGCCGGATGGATAAAATAATACTGTTGTATAGA 2584
Query 931 -------------------------------------------------------------------------- 930
Sbjct 2585 TGGGTGGAAAATGAAGAAAAATGGCAAGTAGACAAGTGGGTGGATGGATGGATGGATGGATGGACTGATGGATG 2658
Query 931 -------------------------------------------------------------------------- 930
Sbjct 2659 GATGAGTGGGTAAGTGGATAGCTGCATAAGAGAATGGAGAGATTGGTGGATAAAGATGTATAAGTAGACTGAAA 2732
Query 931 -------------------------------------------------------------------------- 930
Sbjct 2733 GATAGATGTATGGCTAGGTAGATGGGTGGATGGATGTGTGGGTAGGTAGGTAAATGGATGAATAGATATAGGGA 2806
Query 931 -------------------------------------------------------------------------- 930
Sbjct 2807 TGGGTGGGTGGATAGATGGATAAATGAACAAATGGATGATTGGGTAAAATAAGGAGGGAGGACATGGGTAGAGG 2880
Query 931 -------------------------------------------------------------------------- 930
Sbjct 2881 GCAGATAAATGGATATAGGTGGATGAATGCACACAAAGATAAGCAGGTGAACAGATGGATGATCCAGATGATCA 2954
Query 931 ---------------------------GGGAATCCTCTGCAGCCTACCTCCCTGCACTACATGAGTCCCTACCA 977
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2955 TGAGGCTGGGGTTCCTGTGTCCCTACAGGGAATCCTCTGCAGCCTACCTCCCTGCACTACATGAGTCCCTACCA 3028
Query 978 GCTCAGCGCCTATGCCATGGCCCTCAAGGCAGTGGGAGAGATCATCCAGGACTATGACAGTGATAAGCTCTTCC 1051
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3029 GCTCAGCGCCTATGCCATGGCCCTCAAGGCAGTGGGAGAGATCATCCAGGACTATGACAGTGATAAGCTCTTCC 3102
Query 1052 CAGCTTATGGCTTTGGGGCCAAGCTGCCCCCAGAGGGACGGATCTCCCACCAGTTCCCCCT------------- 1112
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3103 CAGCTTATGGCTTTGGGGCCAAGCTGCCCCCAGAGGGACGGATCTCCCACCAGTTCCCCCTGCCTGGCAGGGCA 3176
Query 1113 ------------GAACAACAATGATGAGGACCCCAACTGTGCGGGCATCGAGGGTGTGCTGGAGAGCTATTTCC 1174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3177 TATTCTTTGACAGAACAACAATGATGAGGACCCCAACTGTGCGGGCATCGAGGGTGTGCTGGAGAGCTATTTCC 3250
Query 1175 AGAGCCTGCGCACAGTGCAGCTCTATGGGCCCACCTACTTTGCTCCTGTCATCAACCAAGTGGCCAGGGCTGCA 1248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3251 AGAGCCTGCGCACAGTGCAGCTCTATGGGCCCACCTACTTTGCTCCTGTCATCAACCAAGTGGCCAGGGCTGCA 3324
Query 1249 GCCAAGATCTCTGATGGCTCCCAGTACTATGTTCTGCTCATCATCACTGATGGGGTCATCTCTGACATGACGCA 1322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3325 GCCAAGATCTCTGATGGCTCCCAGTACTATGTTCTGCTCATCATCACTGATGGGGTCATCTCTGACATGACGCA 3398
Query 1323 GACCAAGGAGGCCATCGTCAGCGCCTCCTCATTGCCCATGTCTATCATTATCGTCGGTGTAGGACCAGCCATGT 1396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3399 GACCAAGGAGGCCATCGTCAGCGCCTCCTCATTGCCCATGTCTATCATTATCGTCGGTGTAGGACCAGCCATGT 3472
Query 1397 TTGAGGCAATGGAAGAGTTGGACGGTGATGATGTGCGCGTGTCCTCTAGGGGACGCTACGCAGAGCGGGACATC 1470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3473 TTGAGGCAATGGAAGAGTTGGACGGTGATGATGTGCGCGTGTCCTCTAGGGGACGCTACGCAGAGCGGGACATC 3546
Query 1471 GTTCAG-------------GA----AGGTTG-CTG----------CAG-------CCTTGGCAC---------- 1499
|||||| || |.|||| |.| ||| .|.||||.|
Sbjct 3547 GTTCAGTTCGTCCCATTCCGAGACTATGTTGACCGGTCGGGGAACCAGGTGTTGAGCATGGCCCGACTGGCCAA 3620
Query 1500 --ATCCGTGGTG-------------------------------------------------------------- 1509
|| |||.||
Sbjct 3621 GGAT--GTGCTGGCCGAGATCCCGGAGCAGCTGCTGTCCTATATGCGCACCAGAGACATCCAGCCTCGGCCCCC 3692
Query 1510 -------------------------------------------------------------------------- 1509
Sbjct 3693 ACCCCCTGCCAACCCCAGCCCGATCCCAGCTCCAGAGCAGCCCTGAGGATTCCACATATCCAATGCCTCACAGT 3766
Query 1510 -------------------------------------------------------------------------- 1509
Sbjct 3767 CTGCAAGCCTGCTCACCCACTGCTTCTGCTTTAAGCCAGAGGCACCTGGAACCCTGGACTTCACTGGGAGGGCC 3840
Query 1510 -------------------------------------------------------------------------- 1509
Sbjct 3841 AACTTGGAGGATCAGTGCTGGCTGACAAGCCCTCCGCCTCCTTGCCTGCAGAGGGCCTGGCACTATCACCACCT 3914
Query 1510 -------------------------------------- 1509
Sbjct 3915 CTCTGCCTTCATGCCAATAATAAAGCTGATCTTTATTC 3952
