Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_13283
- Subject:
- XR_924105.3
- Aligned Length:
- 1813
- Identities:
- 1000
- Gaps:
- 718
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AAGTGGCCGCCGGCGTCCGGGTACCCGAGGGCTCTCCCGCGTTGCTGGCACCGCTGGCGCCGCGGTCTCGTAGC 74
Query 1 -----------------------------------------ATGGCGCGCCTGGGCGCTGTGCGCTCCCACTAC 33
|||||||||||||||||||||||||||||||||
Sbjct 75 GCATGGGCCTCCTCCGAGGCGGGCTCCCATGCGCTCGGGCCATGGCGCGCCTGGGCGCTGTGCGCTCCCACTAC 148
Query 34 TGCGCCCTGCTGCTGGCCGCGGCGCTGGCCGTCTGCGCCTTCTACTACCTCGGCTCAGGCCGGGAGACCTTCTC 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 TGCGCCCTGCTGCTGGCCGCGGCGCTGGCCGTCTGCGCCTTCTACTACCTCGGCTCAGGCCGGGAGACCTTCTC 222
Query 108 CAGCGCCACCAAGAGGCTGAAGGAGGCCCGCGCCGGGGCTCCCGCCGCGCCCTCGCCGCCCGCGCTGGAGCTAG 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 CAGCGCCACCAAGAGGCTGAAGGAGGCCCGCGCCGGGGCTCCCGCCGCGCCCTCGCCGCCCGCGCTGGAGCTAG 296
Query 182 CGCGGGGCTCCGTGGCGCCAGCCCCCGGCGCGAAGGCCAAGAGCTTGGAGGGCGGCGGTGCCGGGCCGGTGGAC 255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 CGCGGGGCTCCGTGGCGCCAGCCCCCGGCGCGAAGGCCAAGAGCTTGGAGGGCGGCGGTGCCGGGCCGGTGGAC 370
Query 256 TACCACCTGCTGATGATGTTCACCAAGGCGGAGCACAATGCCGCGCTGCAGGCCAAGGCCCGCGTCGCGCTGCG 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 TACCACCTGCTGATGATGTTCACCAAGGCGGAGCACAATGCCGCGCTGCAGGCCAAGGCCCGCGTCGCGCTGCG 444
Query 330 CTCACTGCTGCGCCTCGCCAAGTTCGAGGCGCACGAGGTGCTTAACCTTCACTTCGTGAGCGAGGAGGCCAGCC 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 CTCACTGCTGCGCCTCGCCAAGTTCGAGGCGCACGAGGTGCTTAACCTTCACTTCGTGAGCGAGGAGGCCAGCC 518
Query 404 GCGAGGTGGCCAAGGGCCTGCTGCGGGAGCTCCTGCCGCCCGCCGCTGGCTTCAAGTGCAAGGTCATCTTCCAC 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 GCGAGGTGGCCAAGGGCCTGCTGCGGGAGCTCCTGCCGCCCGCCGCTGGCTTCAAGTGCAAGGTCATCTTCCAC 592
Query 478 GATGTTGCTGTGCTGACGGATAAGCTCTTCCCCATCGTGGAGGCCATGCAGAAGCACTTCAGTGCTGGCTTGGG 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 GATGTTGCTGTGCTGACGGATAAGCTCTTCCCCATCGTGGAGGCCATGCAGAAGCACTTCAGTGCTGGCTTGGG 666
Query 552 AACCTACTACAGTGACTCCATCTTCTTCCTCTCGGTCGCCATGCATCAGATCATGCCCAAAG------AGATCC 619
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||.||
Sbjct 667 AACCTACTACAGTGACTCCATCTTCTTCCTCTCGGTCGCCATGCATCAGATCATGCCCAAAGGGCTACAGAGCC 740
Query 620 TGCA----GATCATTCAG-------------CTGGACCTAG---ACCTGAAGTT-------TAAGACCAACATC 666
.|.| ||.||| || |.|||..|.| |...|||||| |.|||..|.||.|
Sbjct 741 AGGAAGAGGAGCAT--AGAAAGAAAAAGGAACAGGAAATTGTTCAAAAGAAGTTCATGAAATGAGAAAAGCAGC 812
Query 667 -----------CGGGAGTTGTTTG---------------AGGAATTTGACAGTTTCCT---------------- 698
|||||.|.| | ||||| ||||..|||||
Sbjct 813 AGGAAACAGCTCGGGAATCG---GCGAGGCTGCAGCCGAAGGAA---GACATCTTCCTTTTAAGCAGTGACTCG 880
Query 699 ---------GCCA---------------GGCGCCATCATCG-GCA--TAGC--CCGGGAGATGCAG-------- 735
|||| |.||||||| |.| ||| |.|| ||.||.|| ||||
Sbjct 881 GGAATCGAGGCCACTTCCATCCTGTAACGACGCCATC-TGGAGCATGTGGCTTCCAGGGGA-GCAGTGGCTGAG 952
Query 736 -----CCAGT------------TTACAG---------GCACACA----TTCTGGC----AGT---TCCGCCATG 772
.|||| .||||| ||||||| |||| || ||| ||.||||.|
Sbjct 953 GCCCTGCAGTGGCTTCTCACTGCTACAGTCCAGAGTTGCACACAGCACTTCT-GCTCATAGTCCATCAGCCAGG 1025
Query 773 AGAACCCCCAGACCCGGGTTGGGGGC-CCGCCCCCCGAGG---------GGC----TGCCGGGCTTC------- 825
|| |.||.| .||.||.| ||.|.|..|.||| ||| || ||||..||
Sbjct 1026 AG-----CTAGTC-----ATGTGGCCACCTCGCTGCAAGGATCCAGGAAGGCAGAGTG-CGGGAATCTCCATCT 1088
Query 826 -AACAGC---GGGGTG-------------ATG----------------------------------------TT 842
|||||| .||||| ||| ||
Sbjct 1089 GAACAGCCCATGGGTGCAGCAAAGTCAACATGCAACACAGAACTCATTGTCGTCCTCTCCCCAAATGTGCCCTT 1162
Query 843 GCTGAACCTGG---------AGG--CCATGCGCCAG-----------------------TCC-------CCGC- 874
.|.|||.||.| ||| .|.||.||||| ||| ||||
Sbjct 1163 TCCGAAGCTTGGCTAATGACAGGTTGCTTGAGCCAGAAACAAAGGAATGGTCTTAGACTTCCCTTCTGTCCGCA 1236
Query 875 --------------TCT-ACA--------------------GCCGCCTGCT----------GGAGCCG--GCGC 901
||| ||| |||..||||| || ||.| ||.|
Sbjct 1237 TTCCCCCAGTTCCATCTCACACATGTCTCCTGAGAGCTTCTGCCCTCTGCTTCTGTCCGCCGG-GCTGGTGCTC 1309
Query 902 AG---GTGCA-GCAGC-TGGCC-----GAC-----AAGTACC-----------------------------ACT 931
|| ||||| ||.|| ||||| ||| |||..|| .||
Sbjct 1310 AGCCAGTGCACGCTGCGTGGCCCTCCTGACTGTAGAAGAGCCTCTCTTGTTATGGGGAGAGGACTTCTCTGTCT 1383
Query 932 TCCGCGGCCACCTCGG-GGACCA-------------GGACTT-CTTCACC---------------------ATG 969
||||.|| ||.|.|| .||.|| |.|||| |.|.||| |||
Sbjct 1384 TCCGAGG--ACTTAGGCCGAGCATTACTGCCTGTGTGTACTTCCCTGACCGCTCTGCCCTGGCAGAATTTGATG 1455
Query 970 ATCGGCA----TGG------------AGCACCCCA--------------AGCTCTTCCAT--GTGCT------- 1004
.||..|| ||| ||| |||.| ||||.||.||| .||||
Sbjct 1456 CTCAACAACTGTGGCTCTGAGGGCACAGC-CCCGATTGCTCTGGGGTAGAGCTTTTTCATCGTTGCTCTAAGTT 1528
Query 1005 ----------GGA----CTGTACC---TGGAACCGGCAGCTGTG-------------CACCT------------ 1036
||| ||.|||| | |||||.|...||||| |.|||
Sbjct 1529 TCTTAAATGGGGAAGCTCTTTACCAAGT-GAACCTGGTTCTGTGAGTCTTGTATTTCCTCCTTTTAAAAAATAA 1601
Query 1037 --GGTG----------------GAGGGAC------------CATGG---CTACAGTGACGTCTTCGAGGCCTAT 1077
|.|| .|||||| ||||| .|||| |||||
Sbjct 1602 TAGTTGTTGTTGAATGTGTACTAAGGGACAATCCAAGCCCTCATGGAGCTTACA-----GTCTT---------- 1660
Query 1078 TTCAGGTGTGAGGGCCAC---------GTCA------AGATCTACCAC-------GGGAAC--TGCAACACT-- 1125
|.|.|.||||.|.|| ||.| ||||.|||.|| |||.|| ||..|||||
Sbjct 1661 ---ATGAGAGAGGCCAACCATAGATAAGTAAACAAACAGATGTACAACTGTGGCTGGGCACGGTGGCACACTCA 1731
Query 1126 ------CCCATC----CCGGAGGAC------------ 1140
||||.| |.|||||.|
Sbjct 1732 TGTAGACCCAGCTTCTCAGGAGGCCAAGGAGGGAGGA 1768
