Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_13287
Subject:
XM_017005787.1
Aligned Length:
3075
Identities:
2087
Gaps:
984

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGAGGTTGCCATGGGAACTGCTGGTACTGCAATCATTCATTTTGTGCCTTGCAGATGATTCCACACTGCATGG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CCCGATTTTTATTCAAGAACCAAGTCCTGTAATGTTCCCTTTGGATTCTGAGGAGAAAAAAGTGAAGCTCAATT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GTGAAGTTAAAGGAAATCCAAAACCTCATATCAGGTGGAAGTTAAATGGAACAGATGTTGACACTGGTATGGAT  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  TTCCGCTACAGTGTTGTTGAAGGGAGCTTGTTGATCAATAACCCCAATAAAACCCAAGATGCTGGAACGTACCA  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GTGCACAGCGACAAACTCGTTTGGAACAATTGTTAGCAGAGAAGCAAAGCTTCAGTTTGCTTATCTTGACAACT  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  TTAAAACAAGAACAAGAAGCACTGTGTCTGTCCGTCGAGGTCAAGGAATGGTGCTACTGTGTGGCCCGCCACCC  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  CATTCTGGAGAGCTGAGTTATGCCTGGATCTTCAATGAATACCCTTCCTATCAGGATAATCGCCGCTTTGTTTC  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  TCAAGAGACTGGGAATCTGTATATTGCCAAAGTAGAAAAATCAGATGTTGGGAATTATACCTGTGTGGTTACCA  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  ATACCGTGACAAACCACAAGGTCCTGGGGCCACCTACACCACTAATATTGAGAAATGATGGAGTGATGGGTGAA  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  TATGAGCCCAAAATAGAAGTGCAGTTCCCAGAAACAGTTCCGACTGCAAAAGGAGCAACGGTGAAGCTGGAATG  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  CTTTGCTTTAGGAAATCCAGTACCAACTATTATCTGGCGAAGAGCTGATGGAAAGCCAATAGCAAGGAAAGCCA  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  GAAGACACAAGTCAAATGGAATTCTTGAGATCCCTAATTTTCAGCAGGAGGATGCTGGTTTATATGAATGTGTA  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  GCTGAAAATTCCAGAGGGAAAAATGTAGCAAGGGGACAGCTAACTTTCTATGCTCAACCTAATTGGATTCAAAA  962

Query    1  ----------------------ATGGAAGAAAATGTCTTTTGGGAATGTAAAGCAAATGGAAGGCCTAAGCCTA  52
                                  ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  AATAAATGATATTCACGTGGCCATGGAAGAAAATGTCTTTTGGGAATGTAAAGCAAATGGAAGGCCTAAGCCTA  1036

Query   53  CATACAAGTGGCTAAAAAATGGCGAACCTCTGCTAACTCGGGATAGAATTCAAATTGAGCAAGGAACACTCAAC  126
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  CATACAAGTGGCTAAAAAATGGCGAACCTCTGCTAACTCGGGATAGAATTCAAATTGAGCAAGGAACACTCAAC  1110

Query  127  ATAACAATAGTGAACCTCTCAGATGCTGGCATGTATCAGTGTTTGGCAGAGAATAAACATGGAGTTATCTTTTC  200
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  ATAACAATAGTGAACCTCTCAGATGCTGGCATGTATCAGTGTTTGGCAGAGAATAAACATGGAGTTATCTTTTC  1184

Query  201  CAACGCAGAGCTTAGTGTTATAGCTGTAGGTCCAGATTTTTCAAGAACACTCTTGAAAAGAGTAACTCTTGTCA  274
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  CAACGCAGAGCTTAGTGTTATAGCTGTAGGTCCAGATTTTTCAAGAACACTCTTGAAAAGAGTAACTCTTGTCA  1258

Query  275  AAGTGGGAGGTGAAGTTGTCATTGAGTGTAAGCCAAAAGCGTCTCCAAAACCTGTTTACACCTGGAAGAAAGGA  348
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  AAGTGGGAGGTGAAGTTGTCATTGAGTGTAAGCCAAAAGCGTCTCCAAAACCTGTTTACACCTGGAAGAAAGGA  1332

Query  349  AGGGATATATTAAAAGAAAATGAAAGAATTACCATTTCTGAAGATGGAAACCTCAGAATCATCAACGTTACTAA  422
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  AGGGATATATTAAAAGAAAATGAAAGAATTACCATTTCTGAAGATGGAAACCTCAGAATCATCAACGTTACTAA  1406

Query  423  ATCAGACGCTGGGAGTTATACCTGTATAGCCACTAACCATTTTGGAACTGCTAGCAGTACTGGAAACTTGGTAG  496
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  ATCAGACGCTGGGAGTTATACCTGTATAGCCACTAACCATTTTGGAACTGCTAGCAGTACTGGAAACTTGGTAG  1480

Query  497  TGAAAGATCCAACAAGGGTAATGGTACCCCCTTCCAGTATGGATGTCACTGTTGGAGAGAGTATTGTTTTACCG  570
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  TGAAAGATCCAACAAGGGTAATGGTACCCCCTTCCAGTATGGATGTCACTGTTGGAGAGAGTATTGTTTTACCG  1554

Query  571  TGCCAGGTAACGCATGATCACTCGCTAGACATCGTGTTTACTTGGTCATTTAATGGACACCTGATAGACTTTGA  644
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555  TGCCAGGTAACGCATGATCACTCGCTAGACATCGTGTTTACTTGGTCATTTAATGGACACCTGATAGACTTTGA  1628

Query  645  CAGAGATGGGGACCACTTTGAAAGAGTTGGAGGGGATTCAGCTGGTGATTTGATGATCCGAAACATCCAACTGA  718
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629  CAGAGATGGGGACCACTTTGAAAGAGTTGGAGGGGATTCAGCTGGTGATTTGATGATCCGAAACATCCAACTGA  1702

Query  719  AGCATGCTGGGAAATATGTCTGCATGGTCCAAACAAGTGTGGACAGGCTATCTGCTGCTGCAGACCTGATTGTA  792
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703  AGCATGCTGGGAAATATGTCTGCATGGTCCAAACAAGTGTGGACAGGCTATCTGCTGCTGCAGACCTGATTGTA  1776

Query  793  AGAGGTCCTCCAGGTCCCCCAGAGGCTGTGACAATAGACGAAATCACAGATACCACTGCTCAGCTCTCCTGGAG  866
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777  AGAGGTCCTCCAGGTCCCCCAGAGGCTGTGACAATAGACGAAATCACAGATACCACTGCTCAGCTCTCCTGGAG  1850

Query  867  ACCCGGGCCTGACAATCACAGCCCCATCACCATGTATGTCATTCAAGCCAGGACTCCGTTCTCCGTGGGCTGGC  940
            |||||||||||||||.|||||||||||||||||||||||||||||||||||||||||.||||||||||||||||
Sbjct 1851  ACCCGGGCCTGACAACCACAGCCCCATCACCATGTATGTCATTCAAGCCAGGACTCCATTCTCCGTGGGCTGGC  1924

Query  941  AAGCAGTCAGTACAGTCCCAGAACTCATTGATGGGAAGACATTCACAGCGACCGTGGTGGGTTTGAACCCTTGG  1014
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925  AAGCAGTCAGTACAGTCCCAGAACTCATTGATGGGAAGACATTCACAGCGACCGTGGTGGGTTTGAACCCTTGG  1998

Query 1015  GTTGAATATGAATTCCGCACAGTTGCAGCCAACGTGATTGGGATTGGGGAGCCCAGCCGCCCCTCAGAGAAACG  1088
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999  GTTGAATATGAATTCCGCACAGTTGCAGCCAACGTGATTGGGATTGGGGAGCCCAGCCGCCCCTCAGAGAAACG  2072

Query 1089  GAGAACAGAAGAAGCTCTCCCCGAAGTCACACCAGCGAATGTCAGTGGTGGCGGAGGCAGCAAATCTGAACTGG  1162
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073  GAGAACAGAAGAAGCTCTCCCCGAAGTCACACCAGCGAATGTCAGTGGTGGCGGAGGCAGCAAATCTGAACTGG  2146

Query 1163  TTATAACCTGGGAGACGGTCCCTGAGGAATTACAGAATGGTCGTGGCTTTGGTTATGTGGTGGCCTTCCGGCCC  1236
            |||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||
Sbjct 2147  TTATAACCTGGGAGACGGTCCCTGAGGAATTACAGAATGGTCGAGGCTTTGGTTATGTGGTGGCCTTCCGGCCC  2220

Query 1237  TACGGTAAAATGATCTGGATGCTGACAGTGCTGGCCTCAGCTGACGCCTCTAGATACGTGTTCAGGAATGAGAG  1310
            ||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||
Sbjct 2221  TACGGTAAAATGATCTGGATGCTGACAGTGCTGGCCTCAGCTGATGCCTCTAGATACGTGTTCAGGAATGAGAG  2294

Query 1311  CGTGCACCCCTTCTCTCCCTTTGAGGTTAAAGTAGGTGTCTTCAACAACAAAGGAGAAGGCCCTTTCAGTCCCA  1384
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2295  CGTGCACCCCTTCTCTCCCTTTGAGGTTAAAGTAGGTGTCTTCAACAACAAAGGAGAAGGCCCTTTCAGTCCCA  2368

Query 1385  CCACGGTGGTGTATTCTGCAGAAGAAGAACCCACCAAACCACCAGCCAGTATCTTTGCCAGAAGTCTTTCTGCC  1458
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2369  CCACGGTGGTGTATTCTGCAGAAGAAGAACCCACCAAACCACCAGCCAGTATCTTTGCCAGAAGTCTTTCTGCC  2442

Query 1459  ACAGATATTGAAGTTTTCTGGGCCTCCCCACTGGAGAAGAATAGAGGACGAATACAAGGTTATGAGGTTAAATA  1532
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2443  ACAGATATTGAAGTTTTCTGGGCCTCCCCACTGGAGAAGAATAGAGGACGAATACAAGGTTATGAGGTTAAATA  2516

Query 1533  TTGGAGACATGAAGACAAAGAAGAAAATGCTAGAAAAATACGAACAGTTGGAAATCAGACATCAACAAAAATCA  1606
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2517  TTGGAGACATGAAGACAAAGAAGAAAATGCTAGAAAAATACGAACAGTTGGAAATCAGACATCAACAAAAATCA  2590

Query 1607  CGAACTTAAAAGGCAGTGTGCTGTATCACTTAGCTGTCAAGGCATATAATTCTGCTGGGACAGGCCCCTCTAGT  1680
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2591  CGAACTTAAAAGGCAGTGTGCTGTATCACTTAGCTGTCAAGGCATATAATTCTGCTGGGACAGGCCCCTCTAGT  2664

Query 1681  GCAACAGTCAATGTGACAACCCGAAAGCCACCACCAAGTCAACCCCCCGGAAACATCATATGGAATTCATCAGA  1754
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2665  GCAACAGTCAATGTGACAACCCGAAAGCCACCACCAAGTCAACCCCCCGGAAACATCATATGGAATTCATCAGA  2738

Query 1755  CTCCAAAATTATCCTGAATTGGGATCAAGTGAAGGCCCTGGATAATGAGTCGGAAGTAAAAGGATACAAAGTCT  1828
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2739  CTCCAAAATTATCCTGAATTGGGATCAAGTGAAGGCCCTGGATAATGAGTCGGAAGTAAAAGGATACAAAGTCT  2812

Query 1829  TGTACAGATGGAACAGACAAAGCAGCACATCTGTCATTGAAACAAATAAAACATCGGTGGAGCTTTCTTTGCCT  1902
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2813  TGTACAGATGGAACAGACAAAGCAGCACATCTGTCATTGAAACAAATAAAACATCGGTGGAGCTTTCTTTGCCT  2886

Query 1903  TTCGATGAAGATTATATAATAGAAATTAAGCCATTCAGCGACGGAGGAGATGGCAGCAGCAGTGAACAAATTCG  1976
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2887  TTCGATGAAGATTATATAATAGAAATTAAGCCATTCAGCGACGGAGGAGATGGCAGCAGCAGTGAACAAATTCG  2960

Query 1977  AATTCCAAAGATATCAAATGCCTACGCGAGAGGATCTGGGGCTTCCACTTCGAATGCATGTACGCTGTCAGCCA  2050
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2961  AATTCCAAAGATATCAAATGCCTACGCGAGAGGATCTGGGGCTTCCACTTCGAATGCATGTACGCTGTCAGCCA  3034

Query 2051  TCAGTACAATAATGATTTCCCTCACAGCTAGGTCCAGTTTA  2091
            |||||||||||||||||||||||||||||||||||||||||
Sbjct 3035  TCAGTACAATAATGATTTCCCTCACAGCTAGGTCCAGTTTA  3075

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.