Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_13426
- Subject:
- XR_001743238.1
- Aligned Length:
- 2447
- Identities:
- 1672
- Gaps:
- 741
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GTTGCTAAGACTGTGGGTCGCCGGAGGTGGTGGGAGTTAGTTTTGGCAGCCCGGGCCTGAGAGAGGTCAAGGGT 74
Query 1 ---------------------ATGGTGAAGCAGACTATCCAGATATTCGCGAGGGTGAAGCCCCCTGTCCGGAA 53
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 CATTGCAGAGCCAGGGAGGAGATGGTGAAGCAGACTATCCAGATATTCGCGAGGGTGAAGCCCCCTGTCCGGAA 148
Query 54 GCACCAACAAGGGATTTATTCCATAGATGAAGATGAAAAATTAATACCTAGCTTGGAAATCATCTTACCACGTG 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 GCACCAACAAGGGATTTATTCCATAGATGAAGATGAAAAATTAATACCTAGCTTGGAAATCATCTTACCACGTG 222
Query 128 ATTTGGCAGATGGGTTTGTGAATAATAAGCGAGAAAGCTACAAATTTAAATTTCAAAGAATTTTTGATCAGGAT 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 ATTTGGCAGATGGGTTTGTGAATAATAAGCGAGAAAGCTACAAATTTAAATTTCAAAGAATTTTTGATCAGGAT 296
Query 202 GCAAACCAAGAGACCGTTTTTGAAAACATTGCCAAACCAGTTGCTGGGAGTGTCCTGGCAGGTTACAATGGTAC 275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GCAAACCAAGAGACCGTTTTTGAAAACATTGCCAAACCAGTTGCTGGGAGTGTCCTGGCAGGTTACAATGGTAC 370
Query 276 CATCTTTGCATATGGGCAAACAGGCAGCGGGAAGACATTCACTATCACAGGGGGTGCAGAGCGTTACAGTGACA 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 CATCTTTGCATATGGGCAAACAGGCAGCGGGAAGACATTCACTATCACAGGGGGTGCAGAGCGTTACAGTGACA 444
Query 350 GAGGCATTATCCCAAGGACACTGTCATACATTTTTGAACAGTTACAAAAGGACAGCAGCAAAATATATACAACA 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 GAGGCATTATCCCAAGGACACTGTCATACATTTTTGAACAGTTACAAAAGGACAGCAGCAAAATATATACAACA 518
Query 424 CACATTTCCTATTTGGAAATCTACAATGAATGTGGTTATGATCTTTTGGATCCAAGACATGAAGCCTCCAGTTT 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 CACATTTCCTATTTGGAAATCTACAATGAATGTGGTTATGATCTTTTGGATCCAAGACATGAAGCCTCCAGTTT 592
Query 498 GGAAGATTTGCCGAAAGTGACAATACTGGAGGATCCTGATCAGAACATTCACCTGAAAAACTTGACTCTCCATC 571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 GGAAGATTTGCCGAAAGTGACAATACTGGAGGATCCTGATCAGAACATTCACCTGAAAAACTTGACTCTCCATC 666
Query 572 AGGCAACCACAGAGGAAGAAGCTCTGAATTTGCTTTTTTTAGGAGACACCAACCGAATGATTGCAGAGACTCCT 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 AGGCAACCACAGAGGAAGAAGCTCTGAATTTGCTTTTTTTAGGAGACACCAACCGAATGATTGCAGAGACTCCT 740
Query 646 ATGAACCAAGCTTCAACCCGTTCCCACTGCATTTTCACCATTCATTTGTCAAGCAAGGAACCAGGATCTGCAAC 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 ATGAACCAAGCTTCAACCCGTTCCCACTGCATTTTCACCATTCATTTGTCAAGCAAGGAACCAGGATCTGCAAC 814
Query 720 TGTACGACATGCCAAACTCCATCTGGTTGACCTGGCTGGTTCAGAGCGAGTTGCAAAGACTGGAGTAGGGGGCC 793
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 TGTACGACATGCCAAACTCCATCTGGTTGACCTGGCTGGTTCAGAGCGAGTTGCAAAGACTGGAGTAGGGGGCC 888
Query 794 ATCTTCTAACAGAGGCCAAGTATATCAACTTGTCACTACATTACTTAGAACAGGTTATCATTGCCCTTTCAGAA 867
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 ATCTTCTAACAGAGGCCAAGTATATCAACTTGTCACTACATTACTTAGAACAGGTTATCATTGCCCTTTCAGAA 962
Query 868 AAGCACCGTTCGCACATTCCTTATAGAAACTCCATGATGACCAGTGTCCTAAGAGACAGTTTGGGAGGGAACTG 941
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 AAGCACCGTTCGCACATTCCTTATAGAAACTCCATGATGACCAGTGTCCTAAGAGACAGTTTGGGAGGGAACTG 1036
Query 942 CATGACAACTATGATTGCAACACTCTCCTTGGAGAAAAGGAATCTTGATGAGTCTATATCAACCTGCAGATTTG 1015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 CATGACAACTATGATTGCAACACTCTCCTTGGAGAAAAGGAATCTTGATGAGTCTATATCAACCTGCAGATTTG 1110
Query 1016 CACAGCGAGTGGCACTCATAAAGAATGAAGCTGTTCTTAATGAAGAAATTAACCCCAGATTAGTGATTAAACGC 1089
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 CACAGCGAGTGGCACTCATAAAGAATGAAGCTGTTCTTAATGAAGAAATTAACCCCAGATTAGTGATTAAACGC 1184
Query 1090 CTACAAAAGGAAATCCAGGAACTGAAGGATGAACTGGCCATGGTCACTGGGGAGCAGAGGACAGAGGCACTCAC 1163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 CTACAAAAGGAAATCCAGGAACTGAAGGATGAACTGGCCATGGTCACTGGGGAGCAGAGGACAGAGGCACTCAC 1258
Query 1164 AGAAGCAGAGCTCCTTCAGCTGGAAAAACTAATAACATCCTTTTTGGAAGACCAGGATTCAGACAGTAGATTAG 1237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 AGAAGCAGAGCTCCTTCAGCTGGAAAAACTAATAACATCCTTTTTGGAAGACCAGGATTCAGACAGTAGATTAG 1332
Query 1238 AGGTTGGCGCGGATATGCGTAAAGTTCATCACTGTTTTCATCATTTAAAGAAACTATTGAATGACAAGAAGATC 1311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 AGGTTGGCGCGGATATGCGTAAAGTTCATCACTGTTTTCATCATTTAAAGAAACTATTGAATGACAAGAAGATC 1406
Query 1312 CTTGAAAACAATACAGTCTCCTCTGAAAGCAAAGACCAAGATTGTCAAGAACCATTAAAAGAAGAAGAATATAG 1385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 CTTGAAAACAATACAGTCTCCTCTGAAAGCAAAGACCAAGATTGTCAAGAACCATTAAAAGAAGAAGAATATAG 1480
Query 1386 AAAGCTACGAGATATTCTGAAACAGAGAGATAACGAAATCAGTATCCT-TTC----TG-------AAGTGATGA 1447
|||||||||||||||||||||||||||||||||||||||||.|||||| .|| || |||..|.||
Sbjct 1481 AAAGCTACGAGATATTCTGAAACAGAGAGATAACGAAATCAATATCCTGGTCAACATGTTAAAAAAAGAAAAGA 1554
Query 1448 AGAAA-CT----------TCCTCTATCCTGGTTTG---AAAGGGGAAT---GAGAG------------------ 1486
||||| || |||.||...||||..|| |.|.|.|||| ||.||
Sbjct 1555 AGAAAGCTCAGGAGGCTCTCCACTTGGCTGGCATGGATAGACGTGAATTCAGACAGTCCCAGAGCCCACCCTTC 1628
Query 1487 -----AGGA----------AATGTCATTAGGATGCCAGGAGGCTTTTGAAATCTTCA--------AGAGGGACC 1537
|||| ||.|||| .||.|||| |.|| |||.||| |.| ||.||
Sbjct 1629 CGCCTAGGAAACCCAGAAGAAGGTCA-AAGAATGC-----GACT------ATCCTCAGCTCCCTCACA-GGCCC 1689
Query 1538 ACG-CTGACAGCGTTACCATCGATGACAACAAACAGATT-CT------GAAACAGAGATTTTCTGAAGCCAAGG 1603
|.| || .||||.|| |.|..||.||.|..|||.|| || |||| |.|||||||||||||||||||
Sbjct 1690 AGGACT-TCAGCATT----TTGGGGAAAAGATCCAGTTTGCTCCACAAGAAA-ATAGATTTTCTGAAGCCAAGG 1757
Query 1604 CCCTGGGAGAAAGTATAAATGAAGCAAGAAGTAAAATTGGTCACCTGAAGGAAGAAATCACCCAGCGGCATATA 1677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1758 CCCTGGGAGAAAGTATAAATGAAGCAAGAAGTAAAATTGGTCACCTGAAGGAAGAAATCACCCAGCGGCATATA 1831
Query 1678 CAGCAAGTAGCCCTAGGAATCTCGGAAAACATGGCCGTGCCTCTGATGCCAGACCAGCAGGAGGAGAAGCTGCG 1751
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1832 CAGCAAGTAGCCCTAGGAATCTCGGAAAACATGGCCGTGCCTCTGATG-------------------------- 1879
Query 1752 ATCACAACTGGAGGAAGAAAAGAGAAGGTATAAAACAATGTTCACTCGCCTGAAAGCCCTGAAGGTGGAGATCG 1825
Sbjct 1880 -------------------------------------------------------------------------- 1879
Query 1826 AGCACTTGCAGCTGCTCATGGACAAAGCCAAGGTGAAGCTACAGAAAGAGTTTGAAGTCTGGTGGGCAGAGGAG 1899
Sbjct 1880 -------------------------------------------------------------------------- 1879
Query 1900 GCCACCAACCTGCAGGTAAATTCTCCAGCAGTGAATTCACTCGATCACACGAAGCCATTTCTCCAGACATCTGA 1973
Sbjct 1880 -------------------------------------------------------------------------- 1879
Query 1974 CTCCCAGCATGAACGGTCCCAACTCCTCTCTAACAAAAGTTCTGGAGGCTGGGAAGTCCAAGATCAAGGCACTG 2047
Sbjct 1880 -------------------------------------------------------------------------- 1879
Query 2048 GCAGATTCGATGTCTGTGATGTGAATGCCAGGAAAATCCTGCCCTCGCCTTGCCCCAGTCCACACAGCCAGAAA 2121
Sbjct 1880 -------------------------------------------------------------------------- 1879
Query 2122 CAGAGCAGCACCAGCACCCCACTGGAAGACAGCATCCCCAAGAGGCCAGTGTCGTCCATCCCTCTCACCGGAGA 2195
Sbjct 1880 -------------------------------------------------------------------------- 1879
Query 2196 CAGCCAGACGGACTCGGACATCATCGCCTTCATCAAGGCCAGACAGAGCATTCTGCAGAAGCAATGTTTGGGAA 2269
Sbjct 1880 -------------------------------------------------------------------------- 1879
Query 2270 GCAAT 2274
Sbjct 1880 ----- 1879
