Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_13548
Subject:
XM_017006238.1
Aligned Length:
2517
Identities:
1928
Gaps:
576

Alignment

Query    1  ATGCAGAAGACTAGAAACACCGTAAATACATCTCTAGTAGGTAAACAGAAGCCTCACAAAAAACACATCACAGC  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  TGAAAACATGAAGAGCAGTTTGGTGTGTCTAACACAAGACCAACTACAACAGATTTTGATGACTGTAAACCAAG  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  GAAATAGATCTCTTTCCCTGACTGAGAATGGAAAGGAGGCAAAAAGTCAATATAGTCTATATTTAAACAGTATT  222
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  223  TCTAATCAGCCAAAGGATGAGAACATTATGGGATTATTCAAAAAAACTGAAATGGTTTCATCTGTCCCAGCTGA  296
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  297  AAATAAATCTGTCTTAAATGAACATCAGGAGACATCTAAACAGTGTGAGCAAAAAATTGCCATAGAGAATGAAT  370
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  371  GGAAACCAGCTGATATATTCAGTACTCTGGGGGAAAGGGAATGTGATAGAAGTTCGTTGGAAGCAAAAAAAGCC  444
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  445  CAGTGGAGGAAAGAGCTAGATGAACAGGTTGCTTTAAAGAAGAAAGAAAAAGAAGTTTCTGAAAAATGGAATGA  518
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  519  TCCTTGGAAAAAATCTGAAAGTGATAAAATAATATGGGAAAAACATCAAATT----CTTGAC-CAATCTAG-GG  586
                                             |||||..|..|| |||.||    ||.|.| .|.|.||| ||
Sbjct    1  ---------------------------------ATGGGGCATTCA-CAACTTAGAGCTAGTCAGACTTTAGAGG  40

Query  587  AAACAGTACTGCTGGAGCACCCTTTCAGTGCTGTGAAACAAGAACTGCAGAGAAAATGGATTGAAGAGTTGAAT  660
            |||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||
Sbjct   41  AAACAGTACTGCTGGAGCACCCTTTCAGTGCTGTGAAACAAGAACTGCAAAGAAAATGGATTGAAGAGTTGAAT  114

Query  661  AAGCAAATAGAAGATGACCGTCAAAGAAAAATAGAGGAAAAAATTATATATTCAAAGGGTGAGGAACATGACAG  734
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  115  AAGCAAATAGAAGATGACCGTCAAAGAAAAATAGAGGAAAAAATTATATATTCAAAGGGTGAGGAACATGACAG  188

Query  735  ATGGGCAATGCACTTTGATTCATTAAAGAGTTATCCTGGTTCTCAATCTCAGCTGTTCTCTCGGTCAACACACA  808
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||
Sbjct  189  ATGGGCAATGCACTTTGATTCATTAAAGAGTTATCCTGGTTCTCAATCTCAGCTGTTCTCTCAGTCAACACACA  262

Query  809  AACAACCTGAGTACTTCTGTGTCTCTCCTGACACTCAGGAGCTGGCTGATGTCAGCAGTGTTTGTACACCTACA  882
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  263  AACAACCTGAGTACTTCTGTGTCTCTCCTGACACTCAGGAGCTGGCTGATGTCAGCAGTGTTTGTACACCTACA  336

Query  883  ACCGGAAGCCAGGTTGAACCTTCAGAGGAGGAGCATATAGCAAAACCTATTAAGGATGTGGTTATGGCAAACAG  956
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  337  ACCGGAAGCCAGGTTGAACCTTCAGAGGAGGAGCATATAGCAAAACCTATTAAGGATGTGGTTATGGCAAACAG  410

Query  957  TAAGAAAACAAACTTTCTCCGTTCTATGACTGCTCTCTTGGACCCAGCTCAGATTGAGGAACGAGACAGACAAC  1030
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||
Sbjct  411  TAAGAAAACAAACTTTCTCCGTTCTATGACTGCTCTCTTGGACCCAGCTCAGATTGAGGAACGAGACAGACGAC  484

Query 1031  GACAAAAACAATTAGAGCATCAGAAAGCCATCACTGCCCAGGTAGAAGAGAAGCGCAGGAAGAAACAACTGGAG  1104
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  485  GACAAAAACAATTAGAGCATCAGAAAGCCATCACTGCCCAGGTAGAAGAGAAGCGCAGGAAGAAACAACTGGAG  558

Query 1105  GAAGAGCAAAGAAAGAAGGAAGAACAAGAAGAGGAGCTTCGCTTAGCACAGGAACGTGAAGAGATGCAGAAACA  1178
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  559  GAAGAGCAAAGAAAGAAGGAAGAACAAGAAGAGGAGCTTCGCTTAGCACAGGAACGTGAAGAGATGCAGAAACA  632

Query 1179  GTATGAAGAAGACATACTTAAGCAAAAACAAAAGGAAGAAATCATGACTCTCAAGACAAATGAGCTATTCCAGA  1252
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  633  GTATGAAGAAGACATACTTAAGCAAAAACAAAAGGAAGAAATCATGACTCTCAAGACAAATGAGCTATTCCAGA  706

Query 1253  CAATGCAGCGAGCACAGGAACTGGCACAGAGACTAAAACAAGAACAAAGAATCCGAGAATTGGCGCAAAAGGGA  1326
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  707  CAATGCAGCGAGCACAGGAACTGGCACAGAGACTAAAACAAGAACAAAGAATCCGAGAATTGGCGCAAAAGGGA  780

Query 1327  CATGACACTTCTAGACTGATTAAAAATCTTGGT------------------GTTGATACAATACAAATGGAATA  1382
            |||||||||||||||||||||||||||||||||                  |||||||||||||||||||||||
Sbjct  781  CATGACACTTCTAGACTGATTAAAAATCTTGGTGGTGATTTCTCTTTGCCAGTTGATACAATACAAATGGAATA  854

Query 1383  TAATGCATCTAACATTTCAAATTCAAGACATGATTCTGATGAAATCAGTGGTAAAATGAATACATATATGAATT  1456
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  855  TAATGCATCTAACATTTCAAATTCAAGACATGATTCTGATGAAATCAGTGGTAAAATGAATACATATATGAATT  928

Query 1457  CTACGACTTCTAAGAAGGATACTGGTGTGCAAACAGATGACTTAAATATAGGAATATTCACCAATGCAGAATCA  1530
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  929  CTACGACTTCTAAGAAGGATACTGGTGTGCAAACAGATGACTTAAATATAGGAATATTCACCAATGCAGAATCA  1002

Query 1531  CATTGTGGATCATTAATGGAGAGGGACATCACAAATTGTTCATCTCCTGAGATTTCGGCAGAACTTATTGGACA  1604
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1003  CATTGTGGATCATTAATGGAGAGGGACATCACAAATTGTTCATCTCCTGAGATTTCGGCAGAACTTATTGGACA  1076

Query 1605  GTTTAGCACCAAGAAAAACAAGCAAGAACTAACTCAGGATAAAGGAGCCAGCTTAGAAAAAGAAAACAATCGGT  1678
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077  GTTTAGCACCAAGAAAAACAAGCAAGAACTAACTCAGGATAAAGGAGCCAGCTTAGAAAAAGAAAACAATCGGT  1150

Query 1679  GTAATGACCAGTGTAATCAGTTCACAAGAATAGAGAAACAAACAAAACACATGAAGAAATATCCTAAAAGGCCT  1752
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1151  GTAATGACCAGTGTAATCAGTTCACAAGAATAGAGAAACAAACAAAACACATGAAGAAATATCCTAAAAGGCCT  1224

Query 1753  GATTGGAATATAAATAAGCCACCTAAAAGGTATATTCCAGCATCAGAAAAGTACCCTAAACAGCTTCAAAAGCA  1826
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1225  GATTGGAATATAAATAAGCCACCTAAAAGGTATATTCCAGCATCAGAAAAGTACCCTAAACAGCTTCAAAAGCA  1298

Query 1827  GAGAGAAGAAAAAAAAGTAAGGAGGCAGATGGAATTGCTTCATTTGGTAGAAAAAAATAATCCTGGGCACCTCT  1900
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1299  GAGAGAAGAAAAAAAAGTAAGGAGGCAGATGGAATTGCTTCATTTGGTAGAAAAAAATAATCCTGGGCACCTCT  1372

Query 1901  CTCAAAACAGAGGCATTTCACCAGAAATTTTTCATTCATCTCATCAAGAAACGGAGTCAAAGTTGAGGTGGCAT  1974
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1373  CTCAAAACAGAGGCATTTCACCAGAAATTTTTCATTCATCTCATCAAGAAACGGAGTCAAAGTTGAGGTGGCAT  1446

Query 1975  CTAGTCAAAAAGGAAGAAGAGCCTCTGAATATTCATTCATTCAGCAAGGAAAGGTCTCCATCATCACCAGTTCC  2048
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1447  CTAGTCAAAAAGGAAGAAGAGCCTCTGAATATTCATTCATTCAGCAAGGAAAGGTCTCCATCATCACCAGTTCC  1520

Query 2049  AGTAGTGAAAAACAGAACCCAACAAACTCAAAATACATTACATTTACCACTAAAAAACAGTAGCTATGAGAGAG  2122
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1521  AGTAGTGAAAAACAGAACCCAACAAACTCAAAATACATTACATTTACCACTAAAAAACAGTAGCTATGAGAGAG  1594

Query 2123  AGAATTTGATCTCAGGAAGTAATCAAACAGAATTATCATCTGGGATTTCTGAATCATCCCATTTTATTCCGTAT  2196
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1595  AGAATTTGATCTCAGGAAGTAATCAAACAGAATTATCATCTGGGATTTCTGAATCATCCCATTTTATTCCGTAT  1668

Query 2197  GTTCGAACAAATGAGATCTATTACCTTGATCCCGATGCACCATTGTCTGGGCCTTCAACCCAGGACCCTCAGTA  2270
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1669  GTTCGAACAAATGAGATCTATTACCTTGATCCCGATGCACCATTGTCTGGGCCTTCAACCCAGGACCCTCAGTA  1742

Query 2271  CCAAAATTCACAAGACTGTGGCCAAAAACGACAGCTATTTGATTCTGACTGTGTCAGGGATCCACTTCTTAATC  2344
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1743  CCAAAATTCACAAGACTGTGGCCAAAAACGACAGCTATTTGATTCTGACTGTGTCAGGGATCCACTTCTTAATC  1816

Query 2345  CTAACATGGTGAAAAATAGGGATCGACAGCAAGCAATCCTTAAGGGACTTTCAGAACTGAGACAGGGCCTTCTC  2418
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1817  CTAACATGGTGAAAAATAGGGATCGACAGCAAGCAATCCTTAAGGGACTTTCAGAACTGAGACAGGGCCTTCTC  1890

Query 2419  CAGAAGCAAAAGGAGTTGGAAAGTAGTCTCCTGCCTTTAGCTGAAAATCAAGAAGAGAGTTTTGGTTCTTCATT  2492
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1891  CAGAAGCAAAAGGAGTTGGAAAGTAGTCTCCTGCCTTTAGCTGAAAATCAAGAAGAGAGTTTTGGTTCTTCATT  1964

Query 2493  T  2493
            |
Sbjct 1965  T  1965

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