Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_13742
- Subject:
- XR_001784083.1
- Aligned Length:
- 2516
- Identities:
- 902
- Gaps:
- 1479
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GTGCGAGGCACTGAAATGACCTGGATGGTCTTTCATCCTAGAACAGTACCGTTACGTGGATGATGATGGTTGCG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TTTTACGGAAAACACTGAGTGTTTTAACTCAAATGGGTGATGAAAAGGACTCTTGGAAAGTGAAAACGTTAGAT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GAAATTCTCCAGGAAAAGAAACGAAGGAAAGAACAAGAGGAGAAAGCAGAGATAAAACGCTTAAAAAATTCTGA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TGACCGCGATTCCAAAAGGGATTCCCTTGAGGAGGGGGAGCTGAGAGATCACCGAATGGAGATCACAATCAGGA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 ACTCACCATATAGAAGAGAGGATTCTATGGAAGACAGAGGAGAGGAGGATGATTCTCTGGCCATCAAACCACCC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CAGCAAATGTCTCGGAAAGAAAAGGCTCATCACAGAAAAGACGAGAAAAGAAAAGAGAAACGTCGACATCGTAG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CCATTCAGCAGAGGGAGGGAAACATGCCAGAGTGAAAGAGAAAGAAAGGGAGCACGAACGCCGGAAACGCCACC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GAGAAGAACAAGATAAAGCTCGAAGGGAGTGGGAAAGACAGAAGAGGAGGGAAATGGCGAGAGAACATTCCAGA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 AGAGAGAGGGACCGCCTGGAGCAGTTAGAAAGGAAGAGGGAGCGGGAGCGCAAGCTGAGGGAGCAGCAGAAGGA 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 GCAGCGGGAGCAGAAGGAGCGGGAACGGAGGGCAGAGGAGCGCCGCAAAGAGAGAGAAGCGCGTAGGGAAGTCT 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CTGCACATCACCGTACCATGAGGGAGGAGTACAGTGATAAGGGGAAGGTTGGCCACTGGAGCCGCAGCCCTCTG 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 AGGCCACCAAGAGAGCGCTTTGAGATGGGAGACAACCGGAAGCCAGTAAAAGAAGAGAAGGTGGAAGAGAGAGA 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 CTTGTTGTCAGACCTCCAAGACATCAGTGACAGCGAGAGGAAAACCAGCTCAGCTGAGTCTTCATCAGCAGAAT 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 CAGGCTCAGGTTCTGAAGAGGAGGAGGAGGAAGAAGAAGAGGAAGAAGAAGAAGAAGGGAGCACCAGTGAAGAA 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 TCAGAGGAAGAAGAGGAAGAAGAAGAGGAGGAGGAAGAAGAGGAGACTGGGAGCAACTCTGAGGAGGCCTCTGA 1110
Query 1 -----------------------------------------ATGAAGAACGAGAAAATGAAAACCACCTCTTGG 33
|||||||..|||||||.||.||||||.||||||
Sbjct 1111 ACAGTCCGCAGAAGAAGTCAGTGATGAGGAAATGAGTGAAGATGAAGACAGAGAAAACGAGAACCACATCTTGG 1184
Query 34 TTGTTCCAGAGTCACGGTTCGACCGAGATTCCGGGGAGAGTGAAGAAGCAGAGGAAGAAGT------------- 94
||||||||||||||||.||.|||||||||||.|||||.||||||||||..|||||||||||
Sbjct 1185 TTGTTCCAGAGTCACGATTTGACCGAGATTCTGGGGACAGTGAAGAAGGGGAGGAAGAAGTTGGTGAAGGGACT 1258
Query 95 -------------------------------------------------------------------------- 94
Sbjct 1259 CCACAGAGCAGTGCCCCCACCGAAGGAGACTATGTTCCTGACTCTCCAGCACTGTCACCTATTGAGCTAAAACA 1332
Query 95 -----------------------------GGGGCTGCCGGAGCGTCGAGGAGTTCCAGTGCCTGAACAGGATCG 139
.|||.|||.||||.||.||||||||.|||||.|||||||||||.|
Sbjct 1333 AGAACTGCCCAAATACCTGCCAGCCCTGCAGGGATGCAGGAGTGTAGAGGAGTTTCAGTGTCTGAACAGGATTG 1406
Query 140 AGGAGGGCACCTATGGAGTGGTCTACAGAGCAAAAGACAAGAAAACAGATGAAATTGTGGCTCTAAAGCGGCTG 213
|.||.|||||||||||.|||||||||||||||||.|||||||||||||||||||||||||||||.||||||.|.
Sbjct 1407 AAGAAGGCACCTATGGGGTGGTCTACAGAGCAAAGGACAAGAAAACAGATGAAATTGTGGCTCTGAAGCGGTTA 1480
Query 214 AAGATGGAGAAGGAGAAGGAGGGCTTCCCGATCACGTCCCTGAGGGAGATCAACACCATCCTCAAGGCCCAGCA 287
||||||||||||||||||||.||||||||.||||||||.||||||||.||||||||||||||||||||||||||
Sbjct 1481 AAGATGGAGAAGGAGAAGGAAGGCTTCCCAATCACGTCGCTGAGGGAAATCAACACCATCCTCAAGGCCCAGCA 1554
Query 288 TCCCAACATTGTCACCGTTAGAGAGATTGTGGTGGGCAGCAACATGGACAAGATCTACATCGTGATGAACTATG 361
.||||||||.||||||||.||.||.|||||.|||||.||.||||||||||||||||||||.|||||||||||.|
Sbjct 1555 CCCCAACATCGTCACCGTCAGGGAAATTGTTGTGGGAAGTAACATGGACAAGATCTACATTGTGATGAACTACG 1628
Query 362 TGGAGCACGACCTCAAGAGCCTGATGGAGACCATGAAACAGCCCTTCCTGC----------------------- 412
||||.||.||||||||||||||.||||||||||||||.|||||||||||||
Sbjct 1629 TGGAACATGACCTCAAGAGCCTAATGGAGACCATGAAGCAGCCCTTCCTGCCAGAGATATTAGGAATTCGTAGA 1702
Query 413 -----------------------------------CAGGGGAGGTGAAGACCCTGATGATCCAGCTGCTGCGTG 451
|||||||||||||||||||||||||.|||||||||.|||
Sbjct 1703 GCAAACAGAGCATCTGTGTGATCTCGTCACTTTCGCAGGGGAGGTGAAGACCCTGATGATTCAGCTGCTGAGTG 1776
Query 452 GGGTGAAACACCTGCACGACAACTGGATCCTGCACCGTGACCTCAAGACGTCCAACCTGCTGCTGAGCCACGCC 525
||||.||.|||||.||.|||||.||||||||.|||||||||||.|||||.||.|||||.|||||||||||.||.
Sbjct 1777 GGGTAAAGCACCTCCATGACAATTGGATCCTACACCGTGACCTGAAGACCTCTAACCTCCTGCTGAGCCATGCT 1850
Query 526 GGCATCCTCAAGGTGGGTGATTTTGGGCTGGCGCGGGAGTACGGATCCCCTCTGAAGGCCTACACCCCGGTCGT 599
|||||.|||||||||||.||.|||||||||||.||||||||.||.||.||.||.|||||||||||.||.||.||
Sbjct 1851 GGCATTCTCAAGGTGGGCGACTTTGGGCTGGCTCGGGAGTATGGTTCACCCCTAAAGGCCTACACTCCAGTTGT 1924
Query 600 GGTGACCCAGTGGTACCGCGCCCCAGAGCTGCTGCTTGGTGCCAAGGAATACTCCACGGCCGTGGACATGTGGT 673
.||.||||.||||||.||.||||||||.||.|||||||||||.||||||||||||||.||.|||||||||||||
Sbjct 1925 TGTAACCCTGTGGTATCGTGCCCCAGAACTACTGCTTGGTGCTAAGGAATACTCCACAGCTGTGGACATGTGGT 1998
Query 674 CAGTGGGCTGCATCTTCGGGGAGCTGCTGACTCAGAAGCCTCTGTTCCCCGGGAATTCGGAAATCGATCAGATC 747
|.||.||||||||.||.||.||.||||||||.|||||.|||||||||||.|||||.||.||.||.||||||||.
Sbjct 1999 CGGTAGGCTGCATATTTGGAGAACTGCTGACACAGAAACCTCTGTTCCCTGGGAAGTCAGATATTGATCAGATT 2072
Query 748 AACAAAGTGTTCAAGGAGCTGGGGACCCCCAGTGAGAAAATCTGGCCCGGCTACAGTGAGCTCCCAGTAGTCAA 821
|||||..|.||||||||.|||||.||.||.|||||||||||||||||.|||||.|.|||.|||||||..|||||
Sbjct 2073 AACAAGATTTTCAAGGACCTGGGTACTCCTAGTGAGAAAATCTGGCCTGGCTATAATGACCTCCCAGCCGTCAA 2146
Query 822 GAAGATGACCTTCAGCGAGCACCCCTACAACAACCTCCGCAAGCGCTTCGGGGCTCTGCTCTCAGACCAGGGCT 895
|||||||||||||||||||.|.|||||.|||||||||||||||.|.||.||||||.||.|.|||||.||.||||
Sbjct 2147 GAAGATGACCTTCAGCGAGTATCCCTATAACAACCTCCGCAAGAGATTTGGGGCTTTGTTATCAGATCAAGGCT 2220
Query 896 TCGACCTCATGAACAAGTTCCTGACCTACTTCCCCGGGAGGAGGATCAGCGCTGAGGACGGCCTCAAGCATGAG 969
|.||.||||||||||||||||||||.||||.|||.||.||||||||||.|||.||.||.|||||||||||.||.
Sbjct 2221 TTGATCTCATGAACAAGTTCCTGACATACTACCCTGGCAGGAGGATCAACGCAGAAGATGGCCTCAAGCACGAA 2294
Query 970 TATTTCCGCGAGACCCCCCTCCCCATCGACCCCTCCATGTTCCCCACGTGGCCCGCCAAGAGCGAGCAGCAGCG 1043
||||||||.|||||.|||||||||||||||||.||||||||||||||||||||.||||||||.|||||
Sbjct 2295 TATTTCCGAGAGACTCCCCTCCCCATCGACCCATCCATGTTCCCCACGTGGCCTGCCAAGAGTGAGCA------ 2362
Query 1044 TGTGAAGCGGGGCACCAGCCCGAGGCCCCCTGAGGGAGGCCTGGGCTACAGCCAGCTGGGTGACGACGACCTGA 1117
Sbjct 2363 -------------------------------------------------------------------------- 2362
Query 1118 AGGAGACGGGCTTCCACCTTACCACCACGAACCAGGGGGCCTCTGCCGCGGGCCCCGGCTTCAGCCTCAAGTTC 1191
Sbjct 2363 -------------------------------------------------------------------------- 2362
