Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_13781
- Subject:
- NR_028454.2
- Aligned Length:
- 6633
- Identities:
- 245
- Gaps:
- 6351
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GTGGGGGCCGTTGGCTCCAGACAAATAAACATGGAGTCCATCTTCCACGAGAAACAGCCTTCTGGAAATATGGA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TGACAGTGGTTTTTTCTCTATTCAGAAATGAAAGATCATTTATATGCAATTATAAGGAACACTGGTTTACAGTT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AGAAAATTAGGAAAACAGTGGTTTAACTTGAATTCTCTCTTGACGGGTCCAGAATTAATATCAGATACATATCT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TGCACTTTTCTTGGCTCAATTACAACAGGAAGGTTATTCTATATTTGTCGTTAAGGGTGATCTGCCAGATTGCG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 AAGCTGACCAACTCCTGCAGATGATTAGGGTCCAACAGATGCATCGACCAAAACTTATTGGAGAAGAATTAGCA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CAACTAAAAGAGCAAAGAGTCCATAAAACAGACCTGGAACGAGTGTTAGAAGCAAATGATGGCTCAGGAATGTT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 AGACGAAGATGAGGAGGATTTGCAGAGGGCTCTGGCACTAAGTCGCCAAGAAATTGACATGGAAGATGAGGAAG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CAGATCTCCGCAGGGCTATTCAGCTAAGTATGCAAGGTAGTTCCAGAAACATATCTCAAGATATGACACAGACA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 TCAGGTACAAATCTTACTTCAGAAGAGCTTCGGAAGAGACGAGAAGCCTACTTTGAAAAACAGCAGCAAAAGCA 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 GCAACAGCAGCAGCAGCAGCAGCAGCAGGGGGACCTATCAGGACAGAGTTCACATCCATGTGAAAGGCCAGCCA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CCAGTTCAGGAGCACTTGGGAGTGATCTAGGTGATGCTATGAGTGAAGAAGACATGCTTCAGGCAGCTGTGACC 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 ATGTCTTTAGAAACTGTCAGAAATGATTTGAAAACAGAAGGAAAAAAATAATACCTTTAAAAAATAATTTAGAT 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 ATTCATACTTTCCAACATTATCCTGTGTGATTACAGCATAGGGTCCACTTTGGTAATGTGTCAAAGAGATGAGG 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 AAATAAGACTTTTAGCGGTTTGCAAACAAAATGATGGGAAAGTGGAACAATGCGTCGGTTGTAGGACTAAATAA 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 TGATCTTCCAAATATTAGCCAAAGAGGCATTCAGCAATTAAAGACATTTAAAATAGTTTTCTAAATGTTTCTTT 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 TTCTTTTTTGAGTGTGCAATATGTAACATGTCTAAAGTTAGGGCATTTTTCTTGGATCTTTTTGCAGACTAGCT 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 AATTAGCTCTCGCCTCAGGCTTTTTCCATATAGTTTGTTTTCTTTTTCTGTCTTGTAGGTAAGTTGGCTCACAT 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 CATGTAATAGTGGCTTTCATTTCTTATTAACCAAATTAACCTTTCAGGAAAGTATCTCTACTTTCCTGATGTTG 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 ATAATAGTAATGGTTCTAGAAGGATGAACAGTTCTCCCTTCAACTGTATACCGTGTGCTCCAGTGTTTTCTTGT 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 GTTGTTTTCTCTGATCACAACTTTTCTGCTACCTGGTTTTCATTATTTTCCCACAATTCTTTTGAAAGATGGTA 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 ATCTTTTCTGAGGTTTAGCGTTTTAAGCCCTACGATGGGATCATTATTTCATGACTGGTGCGTTCCTAAACTCT 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 GAAATCAGCCTTGCACAAGTACTTGAGAATAAATGAGCATTTTTTAAAATGTGTGAGCATGTGCTTTCCCAGAT 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 GCTTTATGAATGTCTTTTCACTTATATCAAAACCTTACAGCTTTGTTGCAACCCCTTCTTCCTGCGCCTTATTT 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 TTTCCTTTCTTCTCCAATTGAGAAAACTAGGAGAAGCATAGTATGCAGGCAAGTCTCCTTCTGTTAGAAGACTA 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 AACATACGTACCCACCATGAATGTATGATACATGAAATTTGGCCTTCAATTTTAATAGCAGTTTTATTTTATTT 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 TTTCTCCTATGACTGGAGCTTTGTGTTCTCTTTACAGTTGAGTCATGGAATGTAGGTGTCTGCTTCACATCTTT 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 TAGTAGGTATAGCTTGTCAAAGATGGTGATCTGGAACATGAAAATAATTTACTAATGAAAATATGTTTAAATTT 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 ATACTGTGATTTGACACTTGCATCATGTTTAGATAGCTTAAGAACAATGGAAGTCACAGTACTTAGTGGATCTA 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 TAAATAAGAAAGTCCATAGTTTTGATAAATATTCTCTTTAATTGAGATGTACAGAGAGTTTCTTGCTGGGTCAA 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 TAGGATAGTATCATTTTGGTGAAAACCATGTCTCTGAAATTGATGTTTTAGTTTCAGTGTTCCCTATCCCTCAT 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 TCTCCATCTCCTTTTGAAGCTCTTTTGAATGTTGAATTGTTCATAAGCTAAAATCCAAGAAATTTCAGCTGACA 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 ACTTCGAAAATTATAATATGGTATATTGCCCTCCTGGTGTGTGGCTGCACACATTTTATCAGGGAAAGTTTTTT 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 GATCTAGGATTTATTGCTAACTAACTGAAAAGAGAAGAAAAAATATCTTTTATTTATGATTATAAAATAGCTTT 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 TTCTTCGATATAACAGATTTTTTAAGTCATTATTTTGTGCCAATCAGTTTTCTGAAGTTTCCCTTACACAAAAG 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 GATAGCTTTATTTTAAAATCTAAAGTTTCTTTTAATAGTTAAAAATGTTTCAGAAGAATTATAAAACTTTAAAA 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 CTGCAAGGGATGTTGGAGTTTAGTACTACTCCCTCAAGATTTAAAAAGCTAAATATTTTAAGACTGAACATTTA 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 TGTTAATTATTACCAGTGTGTTTGTCATATTTTCCATGGATATTTGTTCATTACCTTTTTCCATTGAAAAGTTA 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 CATTAAACTTTTCATACACTTGAATTGATGAGCTACCTAATATAAAAATGAGAAAACCAATATGCATTTTAAAG 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 TTTTAACTTTAGAGTTTATAAAGTTCATATATACCCTAGTTAAAGCACTTAAGAAAATATGGCATGTTTGACTT 2886
Query 1 ---------------------------------------------ATGGAGTCTTGCTCTGTCACCCAGGCTGG 29
|.|||||||||||.||||.||||||||||
Sbjct 2887 TTAGTTCCTAGAGAGTTTTTGTTTTTGTTTTTGTTTTTTTTTGAGACGGAGTCTTGCTATGTCTCCCAGGCTGG 2960
Query 30 AGTGCAATGGCGCGATCTCCACTCACTGCAACCTCTGCGTACCAGGTTCAAGCGATTCTCCTGTCTCAGCCTCC 103
||.|||.||||..||||||..||||||.||||.||..|.|.||.|||||||||.|||||||||.||||||||||
Sbjct 2961 AGGGCAGTGGCATGATCTCGGCTCACTACAACTTCCACCTCCCGGGTTCAAGCAATTCTCCTGCCTCAGCCTCC 3034
Query 104 TGAGTAGCTGGGATTACAGGTGCCCACCACCACAGCTGGCTAATTTTTGTATTTTTAGTAGAGACTGGGTTTTA 177
.|||||||||||||||||||.|||||||||||||.|.|||..||||||||||||||.||||||||..|||||.|
Sbjct 3035 AGAGTAGCTGGGATTACAGGCGCCCACCACCACACCCGGCAGATTTTTGTATTTTTGGTAGAGACGCGGTTTCA 3108
Query 178 CCAT-ATTGGCCAGACTGGTCTCGAACTCCTGACCTCAGGTGGTCCGCCTGCCTTGGCTTCCCAAAGTGCTGGG 250
.||| .||||||||.|||||||||||||||||||||||||||.|||||||||||||||.||||||||||.||||
Sbjct 3109 TCATGTTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCCGCCTGCCTTGGCCTCCCAAAGTGTTGGG 3182
Query 251 ATTATAGGAGTGAGCCACTGCGCCTGGCCA---------TT--------------------------------- 282
||||.|||..|||||||||||||||||||| ||
Sbjct 3183 ATTACAGGCATGAGCCACTGCGCCTGGCCAGCTAGAGAGTTTTTAAAGCAGAGCTGAGCACACACTGGATGCGT 3256
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3257 TTGAATGTGTTTGTGTAGTTTGTTGTGAAATTGTTACATTTAGCAGGCAGATCCAGAAGCACTAGTGAACTGTC 3330
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3331 ATCTTGGTGGGGTTGGCTTAAATTTAATTGACTGTTTAGATTCCATTTCTTAATTGATTGGCCAGTATGAAAAG 3404
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3405 ATGCCAGTGCAAGTAACCATAGTATCAAAAAAGTTAAAAATTATTCAAAGCTATAGTTTATACATCAGGTACTG 3478
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3479 CCATTTACTGTAAACCACCTGCAAGAAAGTCAGGAACAACTAAATTCACAAGAACTGTCCTGCTAAGAAGTGTA 3552
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3553 TTAAAGATTTCCATTTTGTTTTACTAATTGGGAACATCTTAATGTTTAATATTTAAACTATTGGTATCATTTTT 3626
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3627 CTAATGTATAATTTGTATTACTGGGATCAAGTATGTACAGTGGTGATGCTAGTAGAAGTTTAAGCCTTGGAAAT 3700
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3701 ACCACTTTCATATTTTCAGATGTCATGGATTTAATGAGTAATTTATGTTTTTAAAATTCAGAATAGTTAATCTC 3774
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3775 TGATCTAAAACCATCAATCTATGTTTTTTACGGTAATCATGTAAATATTTCAGTAATATAAACTGTTTGAAAAG 3848
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3849 GCTGCTGCAGGTAAACTCTATACTAGGATCTTGGCCAAATAATTTACAATTCACAGAATATTTTATTTAAGGTG 3922
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3923 GTGCTTTTTTTTTTTGTCCTTAAAACTTGATTTTTCTTAACTTTATTCATGATGCCAAAGTAAATGAGGAAAAA 3996
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3997 AACTCAAAACCAGTTGAGTATCATTGCAGACAAAACTACCAGTAGTCCATATTGTTTAATATTAAGTTGAATAA 4070
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4071 AATAAATTTTATTTCAGTCAGAGCCTAAATCACATTTTGATTGTCTGAATTTTTGATACTATTTTTAAAATCAT 4144
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4145 GCTAGTGGCGGCTGGGCGTGGTAGCTCACGCCTGTAATCCCAGCATTTTGGGAGGCCGAAGTGGGTGGATCACG 4218
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4219 AGGTCGGGAGTTCGAGACCAGCTTGGCCAAAATGGTGAAACCCCATCTGTACTAAAAACTACAAAAATTAGCTG 4292
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4293 GGCGCGGTGGCAGGTGCCTGTAATCCCAGCTACCTGGGAGTCTGAGGCAGGAGAATTGCTTGAACCCTGGCGAC 4366
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4367 AGAGGATGCAGTGAGCCAAGATGGTGCCACTGTACTCCAGACTGGGCGACAGAGTGAGACTCTGTCTCAAAAAA 4440
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4441 AAAAAAAAAATCATGCTAGTGCCAAGAGCTACTAAATTCTTAAAACCGGCCCATTGGACCTGTACAGATAAAAA 4514
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4515 ATAGATTCAGTGCATAATCAAAATATGATAATTTTAAAATCTTAAGTAGAAAAATAAATCTTGATGTTTTAAAT 4588
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4589 TCTTACGAGGATTCAATAGTTAATATTGATGATCTCCCGGCTGGGTGCAGTGGCTCACGCCTGTAATCCCAGCA 4662
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4663 GTTCTGGAGGCTGAGGTGGGCGAATCACTTCAGGCCAGGAGTTCAAGACCAGTCTGGGCAACATGGTGAAACCT 4736
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4737 CGTTTCTACTAAAAATACAAAAATTAGCCGGGCGTGGTTGCACACACTTGTAATCCCAGCTACTCAGGAGGCTA 4810
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4811 AGAATCGCATGAGCCTAGGAGGCAGAGGTTGCAGAGTGCCAAGGGCTCACCACTGCATTCCAGCCTGCCCAACA 4884
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4885 GAGTGAGACACTGTTTCTGAAAAAAAAAAATATATATATATATATATATATGTGTGTATATATATATGTATATA 4958
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4959 TATATGACTTCCTATTAAAAACTTTATCCCAGTCGGGGGCAGTGGCTCACGCCTGTAATCCCAACACTTTGGGA 5032
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5033 GGCTGAGGCAGGTGGATCACCTGAAGTCCGGAGTTTGAGACCAGCCTGGCCAACATGGTGAAACCCCATCTCTA 5106
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5107 CTAAAAATACAAAACTTAAGCCAGGTATGGTGGCGGGCACCTGTAATCCCAGTTACTTGGGAGGCTGAGGCAGG 5180
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5181 AGAATCGTTTAAACCCAGGAGGTGGAGGTTGCAGTGAGCTGAGATCGTGCCATTGCACTCTAGCCTGGGCAACA 5254
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5255 AGAGTAAAACTCCATCTTAAAGGTTTGTTTGTTTTTTTTTAATCCGGAAACGAAGAGGCGTTGGGCCGCTATTT 5328
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5329 TCTTTTTCTTTCTTTCTTTCTTTCTTTTTTTTTTTTTCTGAGACGGAGTCTAGCTCTGCTGCCCAGGCTGGAGT 5402
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5403 ACAATGACACGATGTTGGCTCACTGCAACCTCCACCTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCAA 5476
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5477 GTACCTGGGATTACAGGCACCTGCCACTACACCTGGCGAATATTTGTTTTTTTTAGTAGAGACGGGCTTTTACC 5550
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5551 ATGTTAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCTGCCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAG 5624
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5625 GTGCAGGCCACCACACCCGGCCTTGGGCCACTGTTTTCAAAGTGAATTGTTTGTTGTATCGAGTCCTTAAGTAT 5698
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5699 GGATATATATGTGACCCTAATTAAGAACTACCAGATTGGATCAACTAATCATGTCAGCAATGTAAATAACTTTA 5772
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5773 TTTTTCATATTCAAAATAAAAACTTTCTTTTATTTCTGGCCCCTTTATAACCAGCATCTTTTTGCTTTAAAAAA 5846
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5847 TGACCTGGCTTTGTATTTTTTTAGTCTTAAACATAATAAAAATATTTTTGTTCTAATTTGCTTTCATGAGTGAA 5920
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5921 GATTATTGACATCGTTGGTAAATTCTAGAATTTTGATTTTGTTTTTTAATTTGAAGAAAATCTTTGCTATTATT 5994
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5995 ATTTTTTCCAAGTGGTCTGGCATTTTAAGAATTAGTGCTAATAACGTAACTTCTAAATTTGTCGTAATTGGCAT 6068
Query 283 -------------------------------------------------------------------------- 282
Sbjct 6069 GTTTAATAGCATATCAAAAAACATTTTAAGCCTGTGGATTCATAGACAAAGCAATGAGAAACATTAGTAAAATA 6142
Query 283 -------------------------------------------------------------------------- 282
Sbjct 6143 TAAATGGATATTCCTGATGCATTTAGGAAGCTCTCAATTGTCTCTTGCATAGTTCAAGGAATGTTTTCTGAATT 6216
Query 283 -------------------------------------------------------------------------- 282
Sbjct 6217 TTTTTAATGCTTTTTTTTTTTTTGAAAGAGGAAAACATACATTTTTAAATGTGATTATCTAATTTTTACAACAC 6290
Query 283 -------------------------------------------------------------------------- 282
Sbjct 6291 TGGGCTATTAGGAATAACTTTTTAAAAATTACTGTTCTGTATAAATATTTGAAATTCAAGTACAGAAAATATCT 6364
Query 283 -------------------------------------------------------------------------- 282
Sbjct 6365 GAAACAAAAAGCATTGTTGTTTGGCCATGATACAAGTGCACTGTGGCAGTGCCGCTTGCTCAGGACCCAGCCCT 6438
Query 283 -------------------------------------------------------------------------- 282
Sbjct 6439 GCAGCCCTTCTGTGTGTGCTCCCTCGTTAAGTTCATTTGCTGTTATTACACACACAGGCCTTCCTGTCTGGTCG 6512
Query 283 -------------------------------------------------------------------------- 282
Sbjct 6513 TTAGAAAAGCCGGGCTTCCAAAGCACTGTTGAACACAGGATTCTGTTGTTAGTGTGGATGTTCAATGAGTTGTA 6586
Query 283 ----------------------------------------------- 282
Sbjct 6587 TTTTAAATATCAAAGATTATTAAATAAAGATAATGTTTGCTTTTCTA 6633
