Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_13781
- Subject:
- NR_028463.2
- Aligned Length:
- 6487
- Identities:
- 245
- Gaps:
- 6205
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GTGGGGGCCGTTGGCTCCAGACAAATAAACATGGAGTCCATCTTCCACGAGAAAGTTATTCTATATTTGTCGTT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AAGGGTGATCTGCCAGATTGCGAAGCTGACCAACTCCTGCAGATGATTAGGGTCCAACAGATGCATCGACCAAA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 ACTTATTGGAGAAGAATTAGCACAACTAAAAGAGCAAAGAGTCCATAAAACAGACCTGGAACGAGTGTTAGAAG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CAAATGATGGCTCAGGAATGTTAGACGAAGATGAGGAGGATTTGCAGAGGGCTCTGGCACTAAGTCGCCAAGAA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 ATTGACATGGAAGATGAGGAAGCAGATCTCCGCAGGGCTATTCAGCTAAGTATGCAAGGTAGTTCCAGAAACAT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 ATCTCAAGATATGACACAGACATCAGGTACAAATCTTACTTCAGAAGAGCTTCGGAAGAGACGAGAAGCCTACT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TTGAAAATCACAACTCAGAAGTAGATGAAGGAAAATTCTGATCAGCTGACATCCTCTTAATACAGCAGCAAAAG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CAGCAACAGCAGCAGCAGCAGCAGCAGCAGGGGGACCTATCAGGACAGAGTTCACATCCATGTGAAAGGCCAGC 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CACCAGTTCAGGAGCACTTGGGAGTGATCTAGGTGATGCTATGAGTGAAGAAGACATGCTTCAGGCAGCTGTGA 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 CCATGTCTTTAGAAACTGTCAGAAATGATTTGAAAACAGAAGGAAAAAAATAATACCTTTAAAAAATAATTTAG 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 ATATTCATACTTTCCAACATTATCCTGTGTGATTACAGCATAGGGTCCACTTTGGTAATGTGTCAAAGAGATGA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 GGAAATAAGACTTTTAGCGGTTTGCAAACAAAATGATGGGAAAGTGGAACAATGCGTCGGTTGTAGGACTAAAT 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 AATGATCTTCCAAATATTAGCCAAAGAGGCATTCAGCAATTAAAGACATTTAAAATAGTTTTCTAAATGTTTCT 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 TTTTCTTTTTTGAGTGTGCAATATGTAACATGTCTAAAGTTAGGGCATTTTTCTTGGATCTTTTTGCAGACTAG 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 CTAATTAGCTCTCGCCTCAGGCTTTTTCCATATAGTTTGTTTTCTTTTTCTGTCTTGTAGGTAAGTTGGCTCAC 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 ATCATGTAATAGTGGCTTTCATTTCTTATTAACCAAATTAACCTTTCAGGAAAGTATCTCTACTTTCCTGATGT 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 TGATAATAGTAATGGTTCTAGAAGGATGAACAGTTCTCCCTTCAACTGTATACCGTGTGCTCCAGTGTTTTCTT 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 GTGTTGTTTTCTCTGATCACAACTTTTCTGCTACCTGGTTTTCATTATTTTCCCACAATTCTTTTGAAAGATGG 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 TAATCTTTTCTGAGGTTTAGCGTTTTAAGCCCTACGATGGGATCATTATTTCATGACTGGTGCGTTCCTAAACT 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 CTGAAATCAGCCTTGCACAAGTACTTGAGAATAAATGAGCATTTTTTAAAATGTGTGAGCATGTGCTTTCCCAG 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 ATGCTTTATGAATGTCTTTTCACTTATATCAAAACCTTACAGCTTTGTTGCAACCCCTTCTTCCTGCGCCTTAT 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 TTTTTCCTTTCTTCTCCAATTGAGAAAACTAGGAGAAGCATAGTATGCAGGCAAGTCTCCTTCTGTTAGAAGAC 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 TAAACATACGTACCCACCATGAATGTATGATACATGAAATTTGGCCTTCAATTTTAATAGCAGTTTTATTTTAT 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 TTTTTCTCCTATGACTGGAGCTTTGTGTTCTCTTTACAGTTGAGTCATGGAATGTAGGTGTCTGCTTCACATCT 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 TTTAGTAGGTATAGCTTGTCAAAGATGGTGATCTGGAACATGAAAATAATTTACTAATGAAAATATGTTTAAAT 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 TTATACTGTGATTTGACACTTGCATCATGTTTAGATAGCTTAAGAACAATGGAAGTCACAGTACTTAGTGGATC 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 TATAAATAAGAAAGTCCATAGTTTTGATAAATATTCTCTTTAATTGAGATGTACAGAGAGTTTCTTGCTGGGTC 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 AATAGGATAGTATCATTTTGGTGAAAACCATGTCTCTGAAATTGATGTTTTAGTTTCAGTGTTCCCTATCCCTC 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 ATTCTCCATCTCCTTTTGAAGCTCTTTTGAATGTTGAATTGTTCATAAGCTAAAATCCAAGAAATTTCAGCTGA 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 CAACTTCGAAAATTATAATATGGTATATTGCCCTCCTGGTGTGTGGCTGCACACATTTTATCAGGGAAAGTTTT 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 TTGATCTAGGATTTATTGCTAACTAACTGAAAAGAGAAGAAAAAATATCTTTTATTTATGATTATAAAATAGCT 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 TTTTCTTCGATATAACAGATTTTTTAAGTCATTATTTTGTGCCAATCAGTTTTCTGAAGTTTCCCTTACACAAA 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 AGGATAGCTTTATTTTAAAATCTAAAGTTTCTTTTAATAGTTAAAAATGTTTCAGAAGAATTATAAAACTTTAA 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 AACTGCAAGGGATGTTGGAGTTTAGTACTACTCCCTCAAGATTTAAAAAGCTAAATATTTTAAGACTGAACATT 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 TATGTTAATTATTACCAGTGTGTTTGTCATATTTTCCATGGATATTTGTTCATTACCTTTTTCCATTGAAAAGT 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 TACATTAAACTTTTCATACACTTGAATTGATGAGCTACCTAATATAAAAATGAGAAAACCAATATGCATTTTAA 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 AGTTTTAACTTTAGAGTTTATAAAGTTCATATATACCCTAGTTAAAGCACTTAAGAAAATATGGCATGTTTGAC 2738
Query 1 -----------------------------------------------ATGGAGTCTTGCTCTGTCACCCAGGCT 27
|.|||||||||||.||||.||||||||
Sbjct 2739 TTTTAGTTCCTAGAGAGTTTTTGTTTTTGTTTTTGTTTTTTTTTGAGACGGAGTCTTGCTATGTCTCCCAGGCT 2812
Query 28 GGAGTGCAATGGCGCGATCTCCACTCACTGCAACCTCTGCGTACCAGGTTCAAGCGATTCTCCTGTCTCAGCCT 101
||||.|||.||||..||||||..||||||.||||.||..|.|.||.|||||||||.|||||||||.||||||||
Sbjct 2813 GGAGGGCAGTGGCATGATCTCGGCTCACTACAACTTCCACCTCCCGGGTTCAAGCAATTCTCCTGCCTCAGCCT 2886
Query 102 CCTGAGTAGCTGGGATTACAGGTGCCCACCACCACAGCTGGCTAATTTTTGTATTTTTAGTAGAGACTGGGTTT 175
||.|||||||||||||||||||.|||||||||||||.|.|||..||||||||||||||.||||||||..|||||
Sbjct 2887 CCAGAGTAGCTGGGATTACAGGCGCCCACCACCACACCCGGCAGATTTTTGTATTTTTGGTAGAGACGCGGTTT 2960
Query 176 TACCAT-ATTGGCCAGACTGGTCTCGAACTCCTGACCTCAGGTGGTCCGCCTGCCTTGGCTTCCCAAAGTGCTG 248
.|.||| .||||||||.|||||||||||||||||||||||||||.|||||||||||||||.||||||||||.||
Sbjct 2961 CATCATGTTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCCGCCTGCCTTGGCCTCCCAAAGTGTTG 3034
Query 249 GGATTATAGGAGTGAGCCACTGCGCCTGGCCA---------TT------------------------------- 282
||||||.|||..|||||||||||||||||||| ||
Sbjct 3035 GGATTACAGGCATGAGCCACTGCGCCTGGCCAGCTAGAGAGTTTTTAAAGCAGAGCTGAGCACACACTGGATGC 3108
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3109 GTTTGAATGTGTTTGTGTAGTTTGTTGTGAAATTGTTACATTTAGCAGGCAGATCCAGAAGCACTAGTGAACTG 3182
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3183 TCATCTTGGTGGGGTTGGCTTAAATTTAATTGACTGTTTAGATTCCATTTCTTAATTGATTGGCCAGTATGAAA 3256
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3257 AGATGCCAGTGCAAGTAACCATAGTATCAAAAAAGTTAAAAATTATTCAAAGCTATAGTTTATACATCAGGTAC 3330
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3331 TGCCATTTACTGTAAACCACCTGCAAGAAAGTCAGGAACAACTAAATTCACAAGAACTGTCCTGCTAAGAAGTG 3404
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3405 TATTAAAGATTTCCATTTTGTTTTACTAATTGGGAACATCTTAATGTTTAATATTTAAACTATTGGTATCATTT 3478
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3479 TTCTAATGTATAATTTGTATTACTGGGATCAAGTATGTACAGTGGTGATGCTAGTAGAAGTTTAAGCCTTGGAA 3552
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3553 ATACCACTTTCATATTTTCAGATGTCATGGATTTAATGAGTAATTTATGTTTTTAAAATTCAGAATAGTTAATC 3626
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3627 TCTGATCTAAAACCATCAATCTATGTTTTTTACGGTAATCATGTAAATATTTCAGTAATATAAACTGTTTGAAA 3700
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3701 AGGCTGCTGCAGGTAAACTCTATACTAGGATCTTGGCCAAATAATTTACAATTCACAGAATATTTTATTTAAGG 3774
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3775 TGGTGCTTTTTTTTTTTGTCCTTAAAACTTGATTTTTCTTAACTTTATTCATGATGCCAAAGTAAATGAGGAAA 3848
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3849 AAAACTCAAAACCAGTTGAGTATCATTGCAGACAAAACTACCAGTAGTCCATATTGTTTAATATTAAGTTGAAT 3922
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3923 AAAATAAATTTTATTTCAGTCAGAGCCTAAATCACATTTTGATTGTCTGAATTTTTGATACTATTTTTAAAATC 3996
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3997 ATGCTAGTGGCGGCTGGGCGTGGTAGCTCACGCCTGTAATCCCAGCATTTTGGGAGGCCGAAGTGGGTGGATCA 4070
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4071 CGAGGTCGGGAGTTCGAGACCAGCTTGGCCAAAATGGTGAAACCCCATCTGTACTAAAAACTACAAAAATTAGC 4144
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4145 TGGGCGCGGTGGCAGGTGCCTGTAATCCCAGCTACCTGGGAGTCTGAGGCAGGAGAATTGCTTGAACCCTGGCG 4218
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4219 ACAGAGGATGCAGTGAGCCAAGATGGTGCCACTGTACTCCAGACTGGGCGACAGAGTGAGACTCTGTCTCAAAA 4292
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4293 AAAAAAAAAAAATCATGCTAGTGCCAAGAGCTACTAAATTCTTAAAACCGGCCCATTGGACCTGTACAGATAAA 4366
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4367 AAATAGATTCAGTGCATAATCAAAATATGATAATTTTAAAATCTTAAGTAGAAAAATAAATCTTGATGTTTTAA 4440
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4441 ATTCTTACGAGGATTCAATAGTTAATATTGATGATCTCCCGGCTGGGTGCAGTGGCTCACGCCTGTAATCCCAG 4514
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4515 CAGTTCTGGAGGCTGAGGTGGGCGAATCACTTCAGGCCAGGAGTTCAAGACCAGTCTGGGCAACATGGTGAAAC 4588
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4589 CTCGTTTCTACTAAAAATACAAAAATTAGCCGGGCGTGGTTGCACACACTTGTAATCCCAGCTACTCAGGAGGC 4662
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4663 TAAGAATCGCATGAGCCTAGGAGGCAGAGGTTGCAGAGTGCCAAGGGCTCACCACTGCATTCCAGCCTGCCCAA 4736
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4737 CAGAGTGAGACACTGTTTCTGAAAAAAAAAAATATATATATATATATATATATGTGTGTATATATATATGTATA 4810
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4811 TATATATGACTTCCTATTAAAAACTTTATCCCAGTCGGGGGCAGTGGCTCACGCCTGTAATCCCAACACTTTGG 4884
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4885 GAGGCTGAGGCAGGTGGATCACCTGAAGTCCGGAGTTTGAGACCAGCCTGGCCAACATGGTGAAACCCCATCTC 4958
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4959 TACTAAAAATACAAAACTTAAGCCAGGTATGGTGGCGGGCACCTGTAATCCCAGTTACTTGGGAGGCTGAGGCA 5032
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5033 GGAGAATCGTTTAAACCCAGGAGGTGGAGGTTGCAGTGAGCTGAGATCGTGCCATTGCACTCTAGCCTGGGCAA 5106
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5107 CAAGAGTAAAACTCCATCTTAAAGGTTTGTTTGTTTTTTTTTAATCCGGAAACGAAGAGGCGTTGGGCCGCTAT 5180
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5181 TTTCTTTTTCTTTCTTTCTTTCTTTCTTTTTTTTTTTTTCTGAGACGGAGTCTAGCTCTGCTGCCCAGGCTGGA 5254
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5255 GTACAATGACACGATGTTGGCTCACTGCAACCTCCACCTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCC 5328
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5329 AAGTACCTGGGATTACAGGCACCTGCCACTACACCTGGCGAATATTTGTTTTTTTTAGTAGAGACGGGCTTTTA 5402
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5403 CCATGTTAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCTGCCTGCCTTGGCCTCCCAAAGTGCTGGGATTAC 5476
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5477 AGGTGCAGGCCACCACACCCGGCCTTGGGCCACTGTTTTCAAAGTGAATTGTTTGTTGTATCGAGTCCTTAAGT 5550
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5551 ATGGATATATATGTGACCCTAATTAAGAACTACCAGATTGGATCAACTAATCATGTCAGCAATGTAAATAACTT 5624
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5625 TATTTTTCATATTCAAAATAAAAACTTTCTTTTATTTCTGGCCCCTTTATAACCAGCATCTTTTTGCTTTAAAA 5698
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5699 AATGACCTGGCTTTGTATTTTTTTAGTCTTAAACATAATAAAAATATTTTTGTTCTAATTTGCTTTCATGAGTG 5772
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5773 AAGATTATTGACATCGTTGGTAAATTCTAGAATTTTGATTTTGTTTTTTAATTTGAAGAAAATCTTTGCTATTA 5846
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5847 TTATTTTTTCCAAGTGGTCTGGCATTTTAAGAATTAGTGCTAATAACGTAACTTCTAAATTTGTCGTAATTGGC 5920
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5921 ATGTTTAATAGCATATCAAAAAACATTTTAAGCCTGTGGATTCATAGACAAAGCAATGAGAAACATTAGTAAAA 5994
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5995 TATAAATGGATATTCCTGATGCATTTAGGAAGCTCTCAATTGTCTCTTGCATAGTTCAAGGAATGTTTTCTGAA 6068
Query 283 -------------------------------------------------------------------------- 282
Sbjct 6069 TTTTTTTAATGCTTTTTTTTTTTTTGAAAGAGGAAAACATACATTTTTAAATGTGATTATCTAATTTTTACAAC 6142
Query 283 -------------------------------------------------------------------------- 282
Sbjct 6143 ACTGGGCTATTAGGAATAACTTTTTAAAAATTACTGTTCTGTATAAATATTTGAAATTCAAGTACAGAAAATAT 6216
Query 283 -------------------------------------------------------------------------- 282
Sbjct 6217 CTGAAACAAAAAGCATTGTTGTTTGGCCATGATACAAGTGCACTGTGGCAGTGCCGCTTGCTCAGGACCCAGCC 6290
Query 283 -------------------------------------------------------------------------- 282
Sbjct 6291 CTGCAGCCCTTCTGTGTGTGCTCCCTCGTTAAGTTCATTTGCTGTTATTACACACACAGGCCTTCCTGTCTGGT 6364
Query 283 -------------------------------------------------------------------------- 282
Sbjct 6365 CGTTAGAAAAGCCGGGCTTCCAAAGCACTGTTGAACACAGGATTCTGTTGTTAGTGTGGATGTTCAATGAGTTG 6438
Query 283 ------------------------------------------------- 282
Sbjct 6439 TATTTTAAATATCAAAGATTATTAAATAAAGATAATGTTTGCTTTTCTA 6487
