Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_13781
- Subject:
- NR_028468.2
- Aligned Length:
- 6631
- Identities:
- 245
- Gaps:
- 6349
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GTGGGGGCCGTTGGCTCCAGACAAATAAACATGGAGTCCATCTTCCACGAGAAACAAGAAGGCTCACTTTGTGC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TCAACATTGCCTGAATAACTTATTGCAAGGAGAATATTTTAGCCCTGTGGAATTATCCTCAATTGCACATCAGC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TGGATGAGGAGGAGAGGATGAGAATGGCAGAAGGAGGAGTTACTAGTGAAGATTATCGCACGTTTTTACAGCAG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CCTTCTGGAAATATGGATGACAGTGGTTTTTTCTCTATTCAGAAATGAAAGATCATTTATATGCAATTATAAGG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 AACACTGGTTTACAGTTAGAAAATTAGGAAAACAGTGGTTTAACTTGAATTCTCTCTTGACGGGTCCAGAATTA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 ATATCAGATACATATCTTGCACTTTTCTTGGCTCAATTACAACAGGAAGGTTATTCTATATTTGTCGTTAAGGG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TGATCTGCCAGATTGCGAAGCTGACCAACTCCTGCAGATGATTAGGGTCCAACAGATGCATCGACCAAAACTTA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 TTGGAGAAGAATTAGCACAACTAAAAGAGCAAAGGTAGTTCCAGAAACATATCTCAAGATATGACACAGACATC 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 AGGTACAAATCTTACTTCAGAAGAGCTTCGGAAGAGACGAGAAGCCTACTTTGAAAAACAGCAGCAAAAGCAGC 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 AACAGCAGCAGCAGCAGCAGCAGCAGGGGGACCTATCAGGACAGAGTTCACATCCATGTGAAAGGCCAGCCACC 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 AGTTCAGGAGCACTTGGGAGTGATCTAGGTGATGCTATGAGTGAAGAAGACATGCTTCAGGCAGCTGTGACCAT 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 GTCTTTAGAAACTGTCAGAAATGATTTGAAAACAGAAGGAAAAAAATAATACCTTTAAAAAATAATTTAGATAT 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 TCATACTTTCCAACATTATCCTGTGTGATTACAGCATAGGGTCCACTTTGGTAATGTGTCAAAGAGATGAGGAA 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 ATAAGACTTTTAGCGGTTTGCAAACAAAATGATGGGAAAGTGGAACAATGCGTCGGTTGTAGGACTAAATAATG 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 ATCTTCCAAATATTAGCCAAAGAGGCATTCAGCAATTAAAGACATTTAAAATAGTTTTCTAAATGTTTCTTTTT 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 CTTTTTTGAGTGTGCAATATGTAACATGTCTAAAGTTAGGGCATTTTTCTTGGATCTTTTTGCAGACTAGCTAA 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 TTAGCTCTCGCCTCAGGCTTTTTCCATATAGTTTGTTTTCTTTTTCTGTCTTGTAGGTAAGTTGGCTCACATCA 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 TGTAATAGTGGCTTTCATTTCTTATTAACCAAATTAACCTTTCAGGAAAGTATCTCTACTTTCCTGATGTTGAT 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 AATAGTAATGGTTCTAGAAGGATGAACAGTTCTCCCTTCAACTGTATACCGTGTGCTCCAGTGTTTTCTTGTGT 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 TGTTTTCTCTGATCACAACTTTTCTGCTACCTGGTTTTCATTATTTTCCCACAATTCTTTTGAAAGATGGTAAT 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 CTTTTCTGAGGTTTAGCGTTTTAAGCCCTACGATGGGATCATTATTTCATGACTGGTGCGTTCCTAAACTCTGA 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 AATCAGCCTTGCACAAGTACTTGAGAATAAATGAGCATTTTTTAAAATGTGTGAGCATGTGCTTTCCCAGATGC 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 TTTATGAATGTCTTTTCACTTATATCAAAACCTTACAGCTTTGTTGCAACCCCTTCTTCCTGCGCCTTATTTTT 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 TCCTTTCTTCTCCAATTGAGAAAACTAGGAGAAGCATAGTATGCAGGCAAGTCTCCTTCTGTTAGAAGACTAAA 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 CATACGTACCCACCATGAATGTATGATACATGAAATTTGGCCTTCAATTTTAATAGCAGTTTTATTTTATTTTT 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 TCTCCTATGACTGGAGCTTTGTGTTCTCTTTACAGTTGAGTCATGGAATGTAGGTGTCTGCTTCACATCTTTTA 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 GTAGGTATAGCTTGTCAAAGATGGTGATCTGGAACATGAAAATAATTTACTAATGAAAATATGTTTAAATTTAT 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 ACTGTGATTTGACACTTGCATCATGTTTAGATAGCTTAAGAACAATGGAAGTCACAGTACTTAGTGGATCTATA 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 AATAAGAAAGTCCATAGTTTTGATAAATATTCTCTTTAATTGAGATGTACAGAGAGTTTCTTGCTGGGTCAATA 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 GGATAGTATCATTTTGGTGAAAACCATGTCTCTGAAATTGATGTTTTAGTTTCAGTGTTCCCTATCCCTCATTC 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 TCCATCTCCTTTTGAAGCTCTTTTGAATGTTGAATTGTTCATAAGCTAAAATCCAAGAAATTTCAGCTGACAAC 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 TTCGAAAATTATAATATGGTATATTGCCCTCCTGGTGTGTGGCTGCACACATTTTATCAGGGAAAGTTTTTTGA 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 TCTAGGATTTATTGCTAACTAACTGAAAAGAGAAGAAAAAATATCTTTTATTTATGATTATAAAATAGCTTTTT 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 CTTCGATATAACAGATTTTTTAAGTCATTATTTTGTGCCAATCAGTTTTCTGAAGTTTCCCTTACACAAAAGGA 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 TAGCTTTATTTTAAAATCTAAAGTTTCTTTTAATAGTTAAAAATGTTTCAGAAGAATTATAAAACTTTAAAACT 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 GCAAGGGATGTTGGAGTTTAGTACTACTCCCTCAAGATTTAAAAAGCTAAATATTTTAAGACTGAACATTTATG 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 TTAATTATTACCAGTGTGTTTGTCATATTTTCCATGGATATTTGTTCATTACCTTTTTCCATTGAAAAGTTACA 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 TTAAACTTTTCATACACTTGAATTGATGAGCTACCTAATATAAAAATGAGAAAACCAATATGCATTTTAAAGTT 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 TTAACTTTAGAGTTTATAAAGTTCATATATACCCTAGTTAAAGCACTTAAGAAAATATGGCATGTTTGACTTTT 2886
Query 1 -------------------------------------------ATGGAGTCTTGCTCTGTCACCCAGGCTGGAG 31
|.|||||||||||.||||.||||||||||||
Sbjct 2887 AGTTCCTAGAGAGTTTTTGTTTTTGTTTTTGTTTTTTTTTGAGACGGAGTCTTGCTATGTCTCCCAGGCTGGAG 2960
Query 32 TGCAATGGCGCGATCTCCACTCACTGCAACCTCTGCGTACCAGGTTCAAGCGATTCTCCTGTCTCAGCCTCCTG 105
.|||.||||..||||||..||||||.||||.||..|.|.||.|||||||||.|||||||||.||||||||||.|
Sbjct 2961 GGCAGTGGCATGATCTCGGCTCACTACAACTTCCACCTCCCGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCAG 3034
Query 106 AGTAGCTGGGATTACAGGTGCCCACCACCACAGCTGGCTAATTTTTGTATTTTTAGTAGAGACTGGGTTTTACC 179
||||||||||||||||||.|||||||||||||.|.|||..||||||||||||||.||||||||..|||||.|.|
Sbjct 3035 AGTAGCTGGGATTACAGGCGCCCACCACCACACCCGGCAGATTTTTGTATTTTTGGTAGAGACGCGGTTTCATC 3108
Query 180 AT-ATTGGCCAGACTGGTCTCGAACTCCTGACCTCAGGTGGTCCGCCTGCCTTGGCTTCCCAAAGTGCTGGGAT 252
|| .||||||||.|||||||||||||||||||||||||||.|||||||||||||||.||||||||||.||||||
Sbjct 3109 ATGTTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCCGCCTGCCTTGGCCTCCCAAAGTGTTGGGAT 3182
Query 253 TATAGGAGTGAGCCACTGCGCCTGGCCA---------TT----------------------------------- 282
||.|||..|||||||||||||||||||| ||
Sbjct 3183 TACAGGCATGAGCCACTGCGCCTGGCCAGCTAGAGAGTTTTTAAAGCAGAGCTGAGCACACACTGGATGCGTTT 3256
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3257 GAATGTGTTTGTGTAGTTTGTTGTGAAATTGTTACATTTAGCAGGCAGATCCAGAAGCACTAGTGAACTGTCAT 3330
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3331 CTTGGTGGGGTTGGCTTAAATTTAATTGACTGTTTAGATTCCATTTCTTAATTGATTGGCCAGTATGAAAAGAT 3404
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3405 GCCAGTGCAAGTAACCATAGTATCAAAAAAGTTAAAAATTATTCAAAGCTATAGTTTATACATCAGGTACTGCC 3478
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3479 ATTTACTGTAAACCACCTGCAAGAAAGTCAGGAACAACTAAATTCACAAGAACTGTCCTGCTAAGAAGTGTATT 3552
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3553 AAAGATTTCCATTTTGTTTTACTAATTGGGAACATCTTAATGTTTAATATTTAAACTATTGGTATCATTTTTCT 3626
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3627 AATGTATAATTTGTATTACTGGGATCAAGTATGTACAGTGGTGATGCTAGTAGAAGTTTAAGCCTTGGAAATAC 3700
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3701 CACTTTCATATTTTCAGATGTCATGGATTTAATGAGTAATTTATGTTTTTAAAATTCAGAATAGTTAATCTCTG 3774
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3775 ATCTAAAACCATCAATCTATGTTTTTTACGGTAATCATGTAAATATTTCAGTAATATAAACTGTTTGAAAAGGC 3848
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3849 TGCTGCAGGTAAACTCTATACTAGGATCTTGGCCAAATAATTTACAATTCACAGAATATTTTATTTAAGGTGGT 3922
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3923 GCTTTTTTTTTTTGTCCTTAAAACTTGATTTTTCTTAACTTTATTCATGATGCCAAAGTAAATGAGGAAAAAAA 3996
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3997 CTCAAAACCAGTTGAGTATCATTGCAGACAAAACTACCAGTAGTCCATATTGTTTAATATTAAGTTGAATAAAA 4070
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4071 TAAATTTTATTTCAGTCAGAGCCTAAATCACATTTTGATTGTCTGAATTTTTGATACTATTTTTAAAATCATGC 4144
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4145 TAGTGGCGGCTGGGCGTGGTAGCTCACGCCTGTAATCCCAGCATTTTGGGAGGCCGAAGTGGGTGGATCACGAG 4218
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4219 GTCGGGAGTTCGAGACCAGCTTGGCCAAAATGGTGAAACCCCATCTGTACTAAAAACTACAAAAATTAGCTGGG 4292
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4293 CGCGGTGGCAGGTGCCTGTAATCCCAGCTACCTGGGAGTCTGAGGCAGGAGAATTGCTTGAACCCTGGCGACAG 4366
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4367 AGGATGCAGTGAGCCAAGATGGTGCCACTGTACTCCAGACTGGGCGACAGAGTGAGACTCTGTCTCAAAAAAAA 4440
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4441 AAAAAAAATCATGCTAGTGCCAAGAGCTACTAAATTCTTAAAACCGGCCCATTGGACCTGTACAGATAAAAAAT 4514
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4515 AGATTCAGTGCATAATCAAAATATGATAATTTTAAAATCTTAAGTAGAAAAATAAATCTTGATGTTTTAAATTC 4588
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4589 TTACGAGGATTCAATAGTTAATATTGATGATCTCCCGGCTGGGTGCAGTGGCTCACGCCTGTAATCCCAGCAGT 4662
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4663 TCTGGAGGCTGAGGTGGGCGAATCACTTCAGGCCAGGAGTTCAAGACCAGTCTGGGCAACATGGTGAAACCTCG 4736
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4737 TTTCTACTAAAAATACAAAAATTAGCCGGGCGTGGTTGCACACACTTGTAATCCCAGCTACTCAGGAGGCTAAG 4810
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4811 AATCGCATGAGCCTAGGAGGCAGAGGTTGCAGAGTGCCAAGGGCTCACCACTGCATTCCAGCCTGCCCAACAGA 4884
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4885 GTGAGACACTGTTTCTGAAAAAAAAAAATATATATATATATATATATATGTGTGTATATATATATGTATATATA 4958
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4959 TATGACTTCCTATTAAAAACTTTATCCCAGTCGGGGGCAGTGGCTCACGCCTGTAATCCCAACACTTTGGGAGG 5032
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5033 CTGAGGCAGGTGGATCACCTGAAGTCCGGAGTTTGAGACCAGCCTGGCCAACATGGTGAAACCCCATCTCTACT 5106
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5107 AAAAATACAAAACTTAAGCCAGGTATGGTGGCGGGCACCTGTAATCCCAGTTACTTGGGAGGCTGAGGCAGGAG 5180
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5181 AATCGTTTAAACCCAGGAGGTGGAGGTTGCAGTGAGCTGAGATCGTGCCATTGCACTCTAGCCTGGGCAACAAG 5254
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5255 AGTAAAACTCCATCTTAAAGGTTTGTTTGTTTTTTTTTAATCCGGAAACGAAGAGGCGTTGGGCCGCTATTTTC 5328
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5329 TTTTTCTTTCTTTCTTTCTTTCTTTTTTTTTTTTTCTGAGACGGAGTCTAGCTCTGCTGCCCAGGCTGGAGTAC 5402
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5403 AATGACACGATGTTGGCTCACTGCAACCTCCACCTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCAAGT 5476
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5477 ACCTGGGATTACAGGCACCTGCCACTACACCTGGCGAATATTTGTTTTTTTTAGTAGAGACGGGCTTTTACCAT 5550
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5551 GTTAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCTGCCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGT 5624
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5625 GCAGGCCACCACACCCGGCCTTGGGCCACTGTTTTCAAAGTGAATTGTTTGTTGTATCGAGTCCTTAAGTATGG 5698
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5699 ATATATATGTGACCCTAATTAAGAACTACCAGATTGGATCAACTAATCATGTCAGCAATGTAAATAACTTTATT 5772
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5773 TTTCATATTCAAAATAAAAACTTTCTTTTATTTCTGGCCCCTTTATAACCAGCATCTTTTTGCTTTAAAAAATG 5846
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5847 ACCTGGCTTTGTATTTTTTTAGTCTTAAACATAATAAAAATATTTTTGTTCTAATTTGCTTTCATGAGTGAAGA 5920
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5921 TTATTGACATCGTTGGTAAATTCTAGAATTTTGATTTTGTTTTTTAATTTGAAGAAAATCTTTGCTATTATTAT 5994
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5995 TTTTTCCAAGTGGTCTGGCATTTTAAGAATTAGTGCTAATAACGTAACTTCTAAATTTGTCGTAATTGGCATGT 6068
Query 283 -------------------------------------------------------------------------- 282
Sbjct 6069 TTAATAGCATATCAAAAAACATTTTAAGCCTGTGGATTCATAGACAAAGCAATGAGAAACATTAGTAAAATATA 6142
Query 283 -------------------------------------------------------------------------- 282
Sbjct 6143 AATGGATATTCCTGATGCATTTAGGAAGCTCTCAATTGTCTCTTGCATAGTTCAAGGAATGTTTTCTGAATTTT 6216
Query 283 -------------------------------------------------------------------------- 282
Sbjct 6217 TTTAATGCTTTTTTTTTTTTTGAAAGAGGAAAACATACATTTTTAAATGTGATTATCTAATTTTTACAACACTG 6290
Query 283 -------------------------------------------------------------------------- 282
Sbjct 6291 GGCTATTAGGAATAACTTTTTAAAAATTACTGTTCTGTATAAATATTTGAAATTCAAGTACAGAAAATATCTGA 6364
Query 283 -------------------------------------------------------------------------- 282
Sbjct 6365 AACAAAAAGCATTGTTGTTTGGCCATGATACAAGTGCACTGTGGCAGTGCCGCTTGCTCAGGACCCAGCCCTGC 6438
Query 283 -------------------------------------------------------------------------- 282
Sbjct 6439 AGCCCTTCTGTGTGTGCTCCCTCGTTAAGTTCATTTGCTGTTATTACACACACAGGCCTTCCTGTCTGGTCGTT 6512
Query 283 -------------------------------------------------------------------------- 282
Sbjct 6513 AGAAAAGCCGGGCTTCCAAAGCACTGTTGAACACAGGATTCTGTTGTTAGTGTGGATGTTCAATGAGTTGTATT 6586
Query 283 --------------------------------------------- 282
Sbjct 6587 TTAAATATCAAAGATTATTAAATAAAGATAATGTTTGCTTTTCTA 6631
