Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_13781
- Subject:
- NR_028470.2
- Aligned Length:
- 6103
- Identities:
- 245
- Gaps:
- 5821
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GTGGGGGCCGTTGGCTCCAGACAAATAAACATGGAGTCCATCTTCCACGAGAAAAAATGAAAGATCATTTATAT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GCAATTATAAGGAACACTGGTTTACAGTTAGAAAATTAGGAAAACAGACAGCAGCAAAAGCAGCAACAGCAGCA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GCAGCAGCAGCAGCAGGGGGACCTATCAGGACAGAGTTCACATCCATGTGAAAGGCCAGCCACCAGTTCAGGAG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CACTTGGGAGTGATCTAGGTGATGCTATGAGTGAAGAAGACATGCTTCAGGCAGCTGTGACCATGTCTTTAGAA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 ACTGTCAGAAATGATTTGAAAACAGAAGGAAAAAAATAATACCTTTAAAAAATAATTTAGATATTCATACTTTC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CAACATTATCCTGTGTGATTACAGCATAGGGTCCACTTTGGTAATGTGTCAAAGAGATGAGGAAATAAGACTTT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TAGCGGTTTGCAAACAAAATGATGGGAAAGTGGAACAATGCGTCGGTTGTAGGACTAAATAATGATCTTCCAAA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 TATTAGCCAAAGAGGCATTCAGCAATTAAAGACATTTAAAATAGTTTTCTAAATGTTTCTTTTTCTTTTTTGAG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 TGTGCAATATGTAACATGTCTAAAGTTAGGGCATTTTTCTTGGATCTTTTTGCAGACTAGCTAATTAGCTCTCG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 CCTCAGGCTTTTTCCATATAGTTTGTTTTCTTTTTCTGTCTTGTAGGTAAGTTGGCTCACATCATGTAATAGTG 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 GCTTTCATTTCTTATTAACCAAATTAACCTTTCAGGAAAGTATCTCTACTTTCCTGATGTTGATAATAGTAATG 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 GTTCTAGAAGGATGAACAGTTCTCCCTTCAACTGTATACCGTGTGCTCCAGTGTTTTCTTGTGTTGTTTTCTCT 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 GATCACAACTTTTCTGCTACCTGGTTTTCATTATTTTCCCACAATTCTTTTGAAAGATGGTAATCTTTTCTGAG 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 GTTTAGCGTTTTAAGCCCTACGATGGGATCATTATTTCATGACTGGTGCGTTCCTAAACTCTGAAATCAGCCTT 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 GCACAAGTACTTGAGAATAAATGAGCATTTTTTAAAATGTGTGAGCATGTGCTTTCCCAGATGCTTTATGAATG 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 TCTTTTCACTTATATCAAAACCTTACAGCTTTGTTGCAACCCCTTCTTCCTGCGCCTTATTTTTTCCTTTCTTC 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 TCCAATTGAGAAAACTAGGAGAAGCATAGTATGCAGGCAAGTCTCCTTCTGTTAGAAGACTAAACATACGTACC 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 CACCATGAATGTATGATACATGAAATTTGGCCTTCAATTTTAATAGCAGTTTTATTTTATTTTTTCTCCTATGA 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 CTGGAGCTTTGTGTTCTCTTTACAGTTGAGTCATGGAATGTAGGTGTCTGCTTCACATCTTTTAGTAGGTATAG 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 CTTGTCAAAGATGGTGATCTGGAACATGAAAATAATTTACTAATGAAAATATGTTTAAATTTATACTGTGATTT 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 GACACTTGCATCATGTTTAGATAGCTTAAGAACAATGGAAGTCACAGTACTTAGTGGATCTATAAATAAGAAAG 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 TCCATAGTTTTGATAAATATTCTCTTTAATTGAGATGTACAGAGAGTTTCTTGCTGGGTCAATAGGATAGTATC 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 ATTTTGGTGAAAACCATGTCTCTGAAATTGATGTTTTAGTTTCAGTGTTCCCTATCCCTCATTCTCCATCTCCT 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 TTTGAAGCTCTTTTGAATGTTGAATTGTTCATAAGCTAAAATCCAAGAAATTTCAGCTGACAACTTCGAAAATT 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 ATAATATGGTATATTGCCCTCCTGGTGTGTGGCTGCACACATTTTATCAGGGAAAGTTTTTTGATCTAGGATTT 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 ATTGCTAACTAACTGAAAAGAGAAGAAAAAATATCTTTTATTTATGATTATAAAATAGCTTTTTCTTCGATATA 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 ACAGATTTTTTAAGTCATTATTTTGTGCCAATCAGTTTTCTGAAGTTTCCCTTACACAAAAGGATAGCTTTATT 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 TTAAAATCTAAAGTTTCTTTTAATAGTTAAAAATGTTTCAGAAGAATTATAAAACTTTAAAACTGCAAGGGATG 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 TTGGAGTTTAGTACTACTCCCTCAAGATTTAAAAAGCTAAATATTTTAAGACTGAACATTTATGTTAATTATTA 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 CCAGTGTGTTTGTCATATTTTCCATGGATATTTGTTCATTACCTTTTTCCATTGAAAAGTTACATTAAACTTTT 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 CATACACTTGAATTGATGAGCTACCTAATATAAAAATGAGAAAACCAATATGCATTTTAAAGTTTTAACTTTAG 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 AGTTTATAAAGTTCATATATACCCTAGTTAAAGCACTTAAGAAAATATGGCATGTTTGACTTTTAGTTCCTAGA 2368
Query 1 ---------------------------------ATGGAGTCTTGCTCTGTCACCCAGGCTGGAGTGCAATGGCG 41
|.|||||||||||.||||.||||||||||||.|||.||||.
Sbjct 2369 GAGTTTTTGTTTTTGTTTTTGTTTTTTTTTGAGACGGAGTCTTGCTATGTCTCCCAGGCTGGAGGGCAGTGGCA 2442
Query 42 CGATCTCCACTCACTGCAACCTCTGCGTACCAGGTTCAAGCGATTCTCCTGTCTCAGCCTCCTGAGTAGCTGGG 115
.||||||..||||||.||||.||..|.|.||.|||||||||.|||||||||.||||||||||.|||||||||||
Sbjct 2443 TGATCTCGGCTCACTACAACTTCCACCTCCCGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGG 2516
Query 116 ATTACAGGTGCCCACCACCACAGCTGGCTAATTTTTGTATTTTTAGTAGAGACTGGGTTTTACCAT-ATTGGCC 188
||||||||.|||||||||||||.|.|||..||||||||||||||.||||||||..|||||.|.||| .||||||
Sbjct 2517 ATTACAGGCGCCCACCACCACACCCGGCAGATTTTTGTATTTTTGGTAGAGACGCGGTTTCATCATGTTTGGCC 2590
Query 189 AGACTGGTCTCGAACTCCTGACCTCAGGTGGTCCGCCTGCCTTGGCTTCCCAAAGTGCTGGGATTATAGGAGTG 262
||.|||||||||||||||||||||||||||.|||||||||||||||.||||||||||.||||||||.|||..||
Sbjct 2591 AGGCTGGTCTCGAACTCCTGACCTCAGGTGATCCGCCTGCCTTGGCCTCCCAAAGTGTTGGGATTACAGGCATG 2664
Query 263 AGCCACTGCGCCTGGCCA---------TT--------------------------------------------- 282
|||||||||||||||||| ||
Sbjct 2665 AGCCACTGCGCCTGGCCAGCTAGAGAGTTTTTAAAGCAGAGCTGAGCACACACTGGATGCGTTTGAATGTGTTT 2738
Query 283 -------------------------------------------------------------------------- 282
Sbjct 2739 GTGTAGTTTGTTGTGAAATTGTTACATTTAGCAGGCAGATCCAGAAGCACTAGTGAACTGTCATCTTGGTGGGG 2812
Query 283 -------------------------------------------------------------------------- 282
Sbjct 2813 TTGGCTTAAATTTAATTGACTGTTTAGATTCCATTTCTTAATTGATTGGCCAGTATGAAAAGATGCCAGTGCAA 2886
Query 283 -------------------------------------------------------------------------- 282
Sbjct 2887 GTAACCATAGTATCAAAAAAGTTAAAAATTATTCAAAGCTATAGTTTATACATCAGGTACTGCCATTTACTGTA 2960
Query 283 -------------------------------------------------------------------------- 282
Sbjct 2961 AACCACCTGCAAGAAAGTCAGGAACAACTAAATTCACAAGAACTGTCCTGCTAAGAAGTGTATTAAAGATTTCC 3034
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3035 ATTTTGTTTTACTAATTGGGAACATCTTAATGTTTAATATTTAAACTATTGGTATCATTTTTCTAATGTATAAT 3108
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3109 TTGTATTACTGGGATCAAGTATGTACAGTGGTGATGCTAGTAGAAGTTTAAGCCTTGGAAATACCACTTTCATA 3182
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3183 TTTTCAGATGTCATGGATTTAATGAGTAATTTATGTTTTTAAAATTCAGAATAGTTAATCTCTGATCTAAAACC 3256
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3257 ATCAATCTATGTTTTTTACGGTAATCATGTAAATATTTCAGTAATATAAACTGTTTGAAAAGGCTGCTGCAGGT 3330
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3331 AAACTCTATACTAGGATCTTGGCCAAATAATTTACAATTCACAGAATATTTTATTTAAGGTGGTGCTTTTTTTT 3404
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3405 TTTGTCCTTAAAACTTGATTTTTCTTAACTTTATTCATGATGCCAAAGTAAATGAGGAAAAAAACTCAAAACCA 3478
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3479 GTTGAGTATCATTGCAGACAAAACTACCAGTAGTCCATATTGTTTAATATTAAGTTGAATAAAATAAATTTTAT 3552
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3553 TTCAGTCAGAGCCTAAATCACATTTTGATTGTCTGAATTTTTGATACTATTTTTAAAATCATGCTAGTGGCGGC 3626
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3627 TGGGCGTGGTAGCTCACGCCTGTAATCCCAGCATTTTGGGAGGCCGAAGTGGGTGGATCACGAGGTCGGGAGTT 3700
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3701 CGAGACCAGCTTGGCCAAAATGGTGAAACCCCATCTGTACTAAAAACTACAAAAATTAGCTGGGCGCGGTGGCA 3774
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3775 GGTGCCTGTAATCCCAGCTACCTGGGAGTCTGAGGCAGGAGAATTGCTTGAACCCTGGCGACAGAGGATGCAGT 3848
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3849 GAGCCAAGATGGTGCCACTGTACTCCAGACTGGGCGACAGAGTGAGACTCTGTCTCAAAAAAAAAAAAAAAATC 3922
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3923 ATGCTAGTGCCAAGAGCTACTAAATTCTTAAAACCGGCCCATTGGACCTGTACAGATAAAAAATAGATTCAGTG 3996
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3997 CATAATCAAAATATGATAATTTTAAAATCTTAAGTAGAAAAATAAATCTTGATGTTTTAAATTCTTACGAGGAT 4070
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4071 TCAATAGTTAATATTGATGATCTCCCGGCTGGGTGCAGTGGCTCACGCCTGTAATCCCAGCAGTTCTGGAGGCT 4144
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4145 GAGGTGGGCGAATCACTTCAGGCCAGGAGTTCAAGACCAGTCTGGGCAACATGGTGAAACCTCGTTTCTACTAA 4218
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4219 AAATACAAAAATTAGCCGGGCGTGGTTGCACACACTTGTAATCCCAGCTACTCAGGAGGCTAAGAATCGCATGA 4292
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4293 GCCTAGGAGGCAGAGGTTGCAGAGTGCCAAGGGCTCACCACTGCATTCCAGCCTGCCCAACAGAGTGAGACACT 4366
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4367 GTTTCTGAAAAAAAAAAATATATATATATATATATATATGTGTGTATATATATATGTATATATATATGACTTCC 4440
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4441 TATTAAAAACTTTATCCCAGTCGGGGGCAGTGGCTCACGCCTGTAATCCCAACACTTTGGGAGGCTGAGGCAGG 4514
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4515 TGGATCACCTGAAGTCCGGAGTTTGAGACCAGCCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAATACAA 4588
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4589 AACTTAAGCCAGGTATGGTGGCGGGCACCTGTAATCCCAGTTACTTGGGAGGCTGAGGCAGGAGAATCGTTTAA 4662
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4663 ACCCAGGAGGTGGAGGTTGCAGTGAGCTGAGATCGTGCCATTGCACTCTAGCCTGGGCAACAAGAGTAAAACTC 4736
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4737 CATCTTAAAGGTTTGTTTGTTTTTTTTTAATCCGGAAACGAAGAGGCGTTGGGCCGCTATTTTCTTTTTCTTTC 4810
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4811 TTTCTTTCTTTCTTTTTTTTTTTTTCTGAGACGGAGTCTAGCTCTGCTGCCCAGGCTGGAGTACAATGACACGA 4884
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4885 TGTTGGCTCACTGCAACCTCCACCTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCAAGTACCTGGGATT 4958
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4959 ACAGGCACCTGCCACTACACCTGGCGAATATTTGTTTTTTTTAGTAGAGACGGGCTTTTACCATGTTAGGCTGG 5032
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5033 TCTCAAACTCCTGACCTCAGGTGATCTGCCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGTGCAGGCCACC 5106
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5107 ACACCCGGCCTTGGGCCACTGTTTTCAAAGTGAATTGTTTGTTGTATCGAGTCCTTAAGTATGGATATATATGT 5180
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5181 GACCCTAATTAAGAACTACCAGATTGGATCAACTAATCATGTCAGCAATGTAAATAACTTTATTTTTCATATTC 5254
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5255 AAAATAAAAACTTTCTTTTATTTCTGGCCCCTTTATAACCAGCATCTTTTTGCTTTAAAAAATGACCTGGCTTT 5328
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5329 GTATTTTTTTAGTCTTAAACATAATAAAAATATTTTTGTTCTAATTTGCTTTCATGAGTGAAGATTATTGACAT 5402
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5403 CGTTGGTAAATTCTAGAATTTTGATTTTGTTTTTTAATTTGAAGAAAATCTTTGCTATTATTATTTTTTCCAAG 5476
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5477 TGGTCTGGCATTTTAAGAATTAGTGCTAATAACGTAACTTCTAAATTTGTCGTAATTGGCATGTTTAATAGCAT 5550
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5551 ATCAAAAAACATTTTAAGCCTGTGGATTCATAGACAAAGCAATGAGAAACATTAGTAAAATATAAATGGATATT 5624
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5625 CCTGATGCATTTAGGAAGCTCTCAATTGTCTCTTGCATAGTTCAAGGAATGTTTTCTGAATTTTTTTAATGCTT 5698
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5699 TTTTTTTTTTTGAAAGAGGAAAACATACATTTTTAAATGTGATTATCTAATTTTTACAACACTGGGCTATTAGG 5772
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5773 AATAACTTTTTAAAAATTACTGTTCTGTATAAATATTTGAAATTCAAGTACAGAAAATATCTGAAACAAAAAGC 5846
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5847 ATTGTTGTTTGGCCATGATACAAGTGCACTGTGGCAGTGCCGCTTGCTCAGGACCCAGCCCTGCAGCCCTTCTG 5920
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5921 TGTGTGCTCCCTCGTTAAGTTCATTTGCTGTTATTACACACACAGGCCTTCCTGTCTGGTCGTTAGAAAAGCCG 5994
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5995 GGCTTCCAAAGCACTGTTGAACACAGGATTCTGTTGTTAGTGTGGATGTTCAATGAGTTGTATTTTAAATATCA 6068
Query 283 ----------------------------------- 282
Sbjct 6069 AAGATTATTAAATAAAGATAATGTTTGCTTTTCTA 6103
