Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_13781
Subject:
NR_037582.2
Aligned Length:
5543
Identities:
243
Gaps:
5265

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GCTTTCTGGGAGTAGCCGGTGCTGAGAGAACCGTGGCTGGCAAAGATGATTCAGGCGATTCTGGTTTTCAACAA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CCATGGGAAGCCACGGCTAGTCCGCTTCTACCAGCGTTTCAAGAAATTCAACAGCAGATTGTTCGAGAGACTTT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CCATCTAGTCCTCAAGCGGGATGACAACATCTGTAACTTCTTGGAGGGTGGAAGTTTGATTGGTGGCTCTGACT  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  ACAAACTGATCTACCGGCACTATGCTACCCTCTACTTTGTATTTTGTGTGGATTCCTCAGAGAGTGAACTTGGA  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  ATCTTGGACCTCATCCAGGTTTTTGTGGAAACTCTGGATAAGTGTTTCGAAAATGTGTGTGAATTGGATTTGAT  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  CTTCCATATGGATAAGGTGCACTACATCCTCCAGGAGGTGGTGATGGGTGGGATGGTGTTGGAAACAAACATGA  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  ATGAAATCGTGGCTCAGATTGAGGCTCAAAACAGGCTGGAGAAATCCGAGGGTGGCCTTTCAGCAGCCCCTGCG  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  CGGGCTGTGTCTGCTGTGAAAAACATCAACCTGCCAGAGATTCCTCGGAACATCAACATTGGCGATCTCAACAT  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  CAAAGTTCCCAACCTGTCCCAGTTTGTCTGAGGATCAAGTATTGGCCTGAAATAGAGTCCTTAAGACAAGCAAA  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  GACAAGCAAGGCAAGCACGTCTGGAAACAGAACCCATTTTGAGCCTTAGAAGAGTCAAGCCTCAGGACCTGGAA  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  ACTTTGTGTCTGGGGAAGACTGTTTGGCATGGAATAGGGAAGGGATTCCTATTGACACTGCTCGGGTGCACCCA  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  GTTCTCACATGTGCAGTCATGCCGTTCTCTGATGCATACGGCCACTGCAGATGTGAGGGGCCCTGCCTTCCTCA  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  GTAGGGAGTCAACATGCCCAAGTCATTTGCACCTTTACCTCTCACATGGATGCTCCCAAGGGTTAGGGACTGCA  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  TTGAGCAGGCCCACCTGCTTCCCAGAACCTCCTCACTAGGGCTGAGCACCTTCTCTGAGTAGAGTCTTCATCCT  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  TAGCACCACAGACTTCTGAGGTCCTGTGCCCTTTACTTGCTGGTGAGGTGTCATAGGTAGAAAAGGGCTGGCCC  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  TTCAGATCTGGGGGTGTGGTGAGTGGCAAGTAAGGGCAGAATTTTAGGAGAACCAGAGTCACCCGCTGGCTCTA  1184

Query    1  ---------------------------------------------------------ATGGAGTCTTGCTCTGT  17
                                                                     .||||||||||||||||
Sbjct 1185  CTGAGATTGTTACACCCAGAATCCTTTTGTGTTTTTTTGTGGTTTTTTTTTTTTGAGGTGGAGTCTTGCTCTGT  1258

Query   18  CACCCAGGCTGGAGTGCAATGGCGCGATCTCCACTCACTGCAACCTCTGCGTACCAGGTTCAAGCGATTCTCCT  91
            |||||||||||||||||..|||.||.|||||..|||||||||||||||||.|.||.|||||||||..|||||||
Sbjct 1259  CACCCAGGCTGGAGTGCTGTGGTGCAATCTCGGCTCACTGCAACCTCTGCTTCCCGGGTTCAAGCATTTCTCCT  1332

Query   92  GTCTCAGCCTCCTGAGTAGCTGGGATTACAGGTGCCCACCACCACAGCTG----GCTAATTTTTGTATTTTTAG  161
            ||||||||||||..||||||||||||||||||..||||||||||    ||    |||||||.||||||.|||||
Sbjct 1333  GTCTCAGCCTCCCCAGTAGCTGGGATTACAGGCACCCACCACCA----TGCCCAGCTAATTGTTGTATGTTTAG  1402

Query  162  TAGAGACTGGGTTTTACCATATTGGCCAGACTGGTCTCGAACTCCT-GACCTCAGGTGGTCCGCCTGCCTTGGC  234
            |||||||.||||||.|||||.||||||||.||||.||||||||||| |||||||.|||.||..||.||||||||
Sbjct 1403  TAGAGACAGGGTTTCACCATGTTGGCCAGGCTGGGCTCGAACTCCTGGACCTCAAGTGATCTACCCGCCTTGGC  1476

Query  235  TTCCCAAAGTGCTGGGATTATAGGAGTGAGCCACTGCGCCTGGCCA---------TT-----------------  282
            .||||||||||||||.||||.|||.|||||||||.|.|||.|||||         ||                 
Sbjct 1477  CTCCCAAAGTGCTGGCATTACAGGTGTGAGCCACCGTGCCCGGCCACCAGAATCCTTTGGTATAGCCAAGCCTT  1550

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 1551  TTGGTTACCGCCTCATGAAGAATATGCTTCCCGCATTGTCCTAGTCCCAGTTGTATTCTCACAGGTGTTATGTG  1624

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 1625  CAGGACACAATCCAAATCATAAACCTGGCTCATGCCCAACACATTTCTGCTAATAGGGAGAGGGACCCACCACA  1698

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 1699  CACCCACACATGCCAGAGGTCCCTCCTCACAGAGGAGAGGGCCTGTGTCTGTAGAAGGTTAAAGCTGACAACAT  1772

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 1773  GTGAAACATCCCAGAATTATGACTCTTCCCAAGTTTAAAATACATTCTCCTCATGAGAGCAGAAGGTTTGTTGC  1846

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 1847  TGTGTTGTGAATGATGAGCTGCCTCCATAGGGAACCCACTGCCACCTGGGCCAGCTTCTGGAGCATGAGAACCT  1920

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 1921  GAGCCAGGGTCACCCTTGTGGGGCCTGGACATGACGCACGCTGGCTGCGACTAGGAGCAGGGCTGCCTCTTCTC  1994

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 1995  CCTCCCCAAGGTCTGCTTGTGGGCACGCTCTGTTCCCTCAGGTGCCATTCTCCCAGGGCTTAGGCGCCCATAAA  2068

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 2069  TGTTCTTTCTGTGGTGGAGTAGGGCCTCCTGCTTCCATACTGTCGCATGGGCTAGATCTCAGGTGTGGTGTTGA  2142

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 2143  GCCACCTTAAGATGAGGGCTGCTTCGCAGTAAAGTTTCCAGCCTGGGCCCCTCTTGGGCCTTCTGGCTGGGGAC  2216

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 2217  CCTCAGCCTCCTGATGCTGTTGCAGGGCAGGTCTGAGAGGGTGCCCAGCAGCACCCGGTGTCAGGGCCACCTTG  2290

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 2291  TTTTCCATTTTTGAACAGCGCTCCCTGTGGTTTGTGCCCACTGCTCAATACAGCCTCCGATCCTCACTCTTGAA  2364

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 2365  AGCTCCATGATAAGCACAGAGATGGGCAGTGTGGGTCAGAAGGTGGGCCGCTTCCTGTGGAAGAGGGAAGTGTA  2438

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 2439  GGTGAATAGATATCAAAACCCCTGATGTCATTCTTTTGAGGGGTTGGATTTTCTTTTTTCTGGCAGACATTTCA  2512

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 2513  GTACATTCACATTTCTCTCACATTTGCTGAATGTGAGATCAGAATAAAGGAGATCGGCGTTTATTTCGTACCTT  2586

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 2587  CTGTAAGTTGGCATGAGCAAGATCATTCAACTGTCCTTACAACAGGCATTCTTATCCCCATTTTGCAGATGACG  2660

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 2661  AAAGTAGACCCAGCTCCAGTAACCTTCCCTTAGATTACACGGGGCTGAGATCTGAGACTGTTCACTTGACTCCA  2734

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 2735  CTGTCCTTTTCTTTCCTCGCTGCTTAAGATGGCTTCTCCCAATGTTATCATCTTCTTTTTTATAGATAAGGAAA  2808

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 2809  CTGAGCCTCAGAGAGTCTGACTTCTCACAAACCGTGGTCTAAATAGGCTTGATTTTCTAAGGTGGCCAGTGATC  2882

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 2883  ATGTCATAGAGTATAAGAGCCAAAGAGTCGTCTGTGTCCCTCCATTTAACTGATGTTGAAGCCGAAGCCCAAGG  2956

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 2957  TGGTAAATGTTATGTTGAGGGTCACAAATCCAGAGCCACATCCCTCTTCTTGAGTTCGTTTGTTACGTGGTTTA  3030

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3031  ATGCATTACTGCAGGACAGCCCTTATGCTAGATTTCCTGGGATAGCCTAGATTTTGAATGTTTTGCCTGCCAGA  3104

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3105  AACCAATGGTTTTAAAAAATCATTGAGTGGTCCTACAGATTCAAAGCGAGCATCCAAACATCCCTCACATGGCC  3178

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3179  TCTTACAATGACATAAAACTGAAGCCCACTTTTTTATTTGGAAAACTCAATCCCTTTGGACAAGCCACAATAAT  3252

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3253  TTTTCATTAACTACTTGAGGTTGCCTGCAAATTCAGCTAGCTTTCCAGCCTGCTATCAGCAAAGCCATAAACAT  3326

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3327  CTTTTTTAAAAATAGGTTAAGGTTGGCCAGGTGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGA  3400

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3401  GGCGGGCAGATCACGAGGTCAGGAGATCGAGACCATCCTAGCTAACACAGTGAAAACCCATCTCTACTAAAAAT  3474

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3475  ACAAAAAATTGGCCAGCCGTGGTAGTGGACACCTGTAGTCCCAGCTACTCAGGAGGCTGCGGCAGGAGAATGGC  3548

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3549  ATGAACCCGGGAGGCAGAGCTTGCAGTGAGCCAAGATCGCACCACTACACTCCAGCCTGGGCAACACAGCAAGA  3622

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3623  CTCCGTCTCAAAAAAAAAAAAAAAAAAAATAGGTTAAGGTTGTATAGAATACTAGGCTTTCCTTTTTTTGTGAG  3696

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3697  ATGGGGGTCTCACACTGTGGCTCAGGCTGGAGTGCAGTGGTGTGATCATGGCTCACTGCAGCCTCGAAGCCCCG  3770

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3771  GGGTCAAGTGATCCTCTCACCTCAGCCTCCTAGGTAGCTGGAACCACAGGCACGCAACCACCACTCCTGGCTAG  3844

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3845  TTTTATTTTTTTAGTAGAATAAGGTCTCACTATGTTGCACAGGCTGGTCTCTAACTCCTTACCTCAAGCCATCC  3918

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3919  TCCCGCCTTGGCCTCCCAAACATGTTGGGATTACAGGTGTGAGCCACTGGACCTGGCCAAATACTGGGTTTTCA  3992

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3993  GTGCTCACTGCCACTAATAAAAATCTGAAATTCTTTCATTATGCAATTTCTAAGTGCCTGGTGAGGGCCAAGCT  4066

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4067  CAGTTCTAGGCTCTGAAGATTAAGAGAGAAACAAGGCTCTGTCTGCTCCTGTTGTCTCTGTGAGCATCTTTGAC  4140

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4141  AGAGTGCTCAGATTGTTGGGATATAGTGCATCGGACTGGCAGCCTGAATTTGTGGAGACCGCAGTCAGTAACTT  4214

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4215  TGTGATATATGGAATATTTAGAGGACAGTAACCCATTTCCCTACGCCCTACCTGATCACATCGTGCCCTGCTGG  4288

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4289  GCCATACCCCAAACAGCCCACCTTCCTCTAGGCCTGGCCATGGCCCTGTGCCTGCCACATTGAGGATTAAGTCA  4362

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4363  GGATATCTTGAGCCCTCTCAAATCCCTGTTTATTCAGGCCTCTGCCACATATAGAGCCAGCCTTCTGTCCCCAC  4436

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4437  CACTTCCACTACCATGGAGCCCACTTAGTAAAACGCTCTCTGGGCCCAGCTTCGCCAGAAAAGACACCAGGGGA  4510

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4511  GCAAGGCTCAAACCAGGGGCAGCTAAATCTGATCTTGTGGACCAGTCTCTAGTAAGGGCTTTCAGCGTGGCTGT  4584

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4585  CTGTCCATTGCTTTCCAAATAGGATGCAGCAATGATTGGTACATGGGTATTAAGATCGGTAGTAGGGGCTAGTC  4658

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4659  CAAGTTTAGCAATAGCCAAACTGGAGAGCCTCTGAAGTATGAGAGTCCCAGAGGGATTTGTCAGCTCCTGGCAG  4732

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4733  ACATCCTGATTTTCACCTTCCTGAGTCTACCCTACCCCAGAGGGTGCCAGTCTCACTGTGGTGATGGTTAGCCC  4806

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4807  AGTGTGTGCTGCACTCACACACCAGCACGGGGTCCGTGCTTGCAGGCTGGTGGATGCTGTCCTCTGGGTTAAGA  4880

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4881  CTGTCTCCCTTCTCGGGAGCACTGGAGGGTTCTCCATCTGCGTGTTTCAGTGGAAGTTGGCAGATACGAAAACA  4954

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4955  GGCCCCTATAGGGAAGCAGTTCCATGAAAATGATTAATTCTTTCCAAAAGACTTAAAATTTTTTCCTATTTCAA  5028

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 5029  TTTTCCTTTCAAAAAAGGAAATACATTCATGTAGTTCAAAACTTAAGAAAACAAAAGTCTGTTCAGCAAAAGAC  5102

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 5103  TCCCACTCCGGTTCCCCAAACGCTGAGCCCCACCCCCCATCCCTGGTAGCAAGAAGTGTTTCCAATTTTAAGGT  5176

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 5177  TAAGAAACAAAGTCCCTGGATTTGTGTTAGGGATGTCTTCCTGAGAGTGGGTTGTGTTCCGTTTGACCCTGGCG  5250

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 5251  GTTGACCTCGGCCCACTAGGATCATGCCGCCCTCTCCAGGGAGGAGGGCCTCCCCATCACCCTGTACAGTGGCA  5324

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 5325  CCCCAGCCCTGGCACTGCCCGCCCTTGCTCAGCGTACCTTTCCCATGGCACTCTGACGTACTGGATGTTTGGTT  5398

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 5399  TCTGAAGTTACTGGCTGTTTACCCTGCCGGGATGTAAGCCCCTCCAGGGCAGGGGCTTGTCTCGTGTTCAGTGC  5472

Query  283  -------------------------------------------------------------------  282
                                                                               
Sbjct 5473  TGCATCCCAGCTGCTGGGCACGGTACCTGGTCCATGGCGTTCAATAAATAACTGTTGGATGAGTGAA  5539

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.