Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_13781
Subject:
NR_135912.2
Aligned Length:
4366
Identities:
242
Gaps:
4092

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GTCATTCGAGGTCCGGGTCCGGCTTGCGGGGTCAGCGAACTGGAGAGGCGCCATGGGCTGGAGTAAGCCCCCCT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CCACCTTCCGTCCTCGATCGTTCCCCTTGTGGAAGTAGTCCCGGGTCTCGTGGGATCCTCGCCGCCCGCTCCCG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CCCTGCGCTGTCGGTTCCCCCGCGCCTGGGCGGACCCTAACCCCACCCGGCCCTCCGCACCGCAGCCCCGGCTG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  CACCAGGTCCTCTGCAGACTGGCCGGACAGCCTGGCCTTTTCCAGCTCAGGTTCCTAATCTGTAAAATGGGCGG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GGCCGTGGGAAGGGGAGGAAGAGGCAGAAAGGCACTGGACTCCAGGAAAGGGGTCGGGGAACGTGCAGGGGTTT  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  TGGCGCCAGACACACCACGTTCCGGCCAAGTGGCTCCTTACTGGCTGTGAACGTGGGCCAGTCACTGTCTCCAA  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  GCCGCAATCTTCGGACTCATTCCGGAAGGCAGTGTAGCCTAATGGTGGAGGGTTCCGACTCTGGAGCCAGGGTT  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  GAAGTCCTCCCTCTTCCTGTGACTTTGAGCGAGTGACTTCACCCCTTGGGCCTCAGCTTCTTCATCTCCAAAAT  592

Query    1  -----------------------------------------------------------------------ATG  3
                                                                                   |  
Sbjct  593  AATGGCAATCATACTACTGTTTTAGACACAGTAAGTGTTATAAACGTGTTTTTGTTTGTTTGTTTGAGACAA--  664

Query    4  GAGTCTTGCTCTGTCACCCAGGCTGGAGTGCAATGGCGCGATCTCCACTCACTGCAACCTCTGCGTACCAGGTT  77
            ||||.||||||||||.||||||||||||||||..|||||||||||..|.|||||||.||||.||.|.||.||||
Sbjct  665  GAGTTTTGCTCTGTCGCCCAGGCTGGAGTGCAGCGGCGCGATCTCGGCCCACTGCAGCCTCCGCCTCCCGGGTT  738

Query   78  CAAGCGATTCTCCTGTCTCAGCCTCCTGAGTAGCTGGGATTACAG-GTGCCCACCACCACAGCTGGCTAATTTT  150
            |||||.|||||||||.|||||||.||||||||||||||||||||| |||  |||||||||..|.||||||||||
Sbjct  739  CAAGCAATTCTCCTGCCTCAGCCACCTGAGTAGCTGGGATTACAGCGTG--CACCACCACGCCAGGCTAATTTT  810

Query  151  TGTATTTTTAGTAGAGACTGGGTTTTACCATATTGGCCAGACTGGTCTCGAACTCCTGACCTCAGGTGGTCCGC  224
            ||||||.|||||||||||.|||||||.||||.||||||||.|||||||||||||||||||||||||||.|||||
Sbjct  811  TGTATTCTTAGTAGAGACGGGGTTTTGCCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCCGC  884

Query  225  CTGCCTTGGCTTCCCAAAGTGCTGGGATTATAGGAGTGAGCCACTGCGCCTGGCCATT----------------  282
            |.||||.|||.||.||||||||||.|||||.|||.|||||||||||||||.||    |                
Sbjct  885  CCGCCTCGGCCTCTCAAAGTGCTGCGATTACAGGCGTGAGCCACTGCGCCCGG----TAGTAAACGTGTTTCTT  954

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct  955  TAAGAATATACTAACAAACTGCAAGGTGATGCGGTCACAGAAGATCTTATTAGACGGAATGCTGAACACAACGA  1028

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 1029  CTGTGTCATTTTTTCCCTGGAGGAACTCTCGTTGCATCAGCAAGAAATAGAAAGACTAGAACACATTGATAAAT  1102

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 1103  GGTGCCGGGATTTAAAAATTCTCTATCTTCAAAATAATCTTATTGGGAAAATTGAAAATGTTAGCAAACTCAAG  1176

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 1177  AAACTTGAATATTTGAATTTAGCTTTAAACAACATTGAAAAAATAGAAAACTTGGAAGATGTCATCTATTGACT  1250

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 1251  TCCTGATGTGGACGATGCAGATTTTGTTCTCTCACACCATCTGCAAGGTTCTCAATTTTCTCCTACCCACCCTC  1324

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 1325  CGTGTATTTTCATATGACATTGACAGGATATCATAATGAAATATGGCATACGGACCCATTTACGGGGACTGGTC  1398

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 1399  TTTTGAATTAACTGTGTTGGGAGAGGATATTACACTTGCTCCCCAACTCTCCCACATCTAATCTCTGGCCTTTC  1472

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 1473  TTATCCTACCTGCCTCCTCCTGCCTTCTTCCAAGCTGGTCTCTCCATCTCCACCTGTGTCATGAATTCCAGGCA  1546

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 1547  GGATGTGAAGAGCTGGCAAAACTTGACCTGACTGTGAATTTCATTGGAGAGCTGAGCAGCATTAAAAACTTGCA  1620

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 1621  GCACAATATCCATCTGAAGGAGCTCTTTCTCATGGGGAACCCATGTGCTTCCTTTGACCACTATAGGGAGTTCG  1694

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 1695  TGGTAGCAACTCTTCCACAATTAAAGTTCCTCTTTAGAGAGCAAAGACCACCTACAGGCACCAGACACAGAGGA  1768

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 1769  ACACAACACAAAGAAATTAGACAACAGTGAAGATGACTTGGAATTCTGGAATAAGCCCTGTTTGTTTACTCCTG  1842

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 1843  AATCAAGATTGGAAACTCTTAGACACATGGAAAAACAACGGAAGAAACAGGAAAAATTAAGTGAAAAAAAGAAG  1916

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 1917  AAAGTGAAACCACCCAGGACTTTGATCACTGAAGATGGGAAAGCCCTAAATGTGAATGAGCCCAAAATTGACTT  1990

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 1991  CTCTTTGAAAGATAACGAAAAGCAGATCATCCTGGACCTTGCTGTCTATAGGTATATGGATACCTCTTTAATCG  2064

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 2065  ATGTTGATGTGCAACCAACTTACGTGCGAGTAATGATCAAAGGAAAGCCATTTCAGCTTGTCCTTCCTGCAGAA  2138

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 2139  GTGAAACCCGATAGTAGTTCTGCTAAAAGATCTCAGACAACGGGTCATTTGGTCATCTGCATGCCCAAGGTAGG  2212

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 2213  AGAAGTAATCACAGGTGGTCAGCGAGCATTCAAATCTATGAAAACTACCTCGGACAGGAGCAGAGAACAAACAA  2286

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 2287  ATACAAGAAGCAAGCACATGGAGAAACTAGAAGTAGACCCTAGCAAGCACTCATTCCCTGATGTGACTAACATA  2360

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 2361  GTTCAAGAGAAAAAACACACACCCAGAAGACGACCTGAACCCAAAATTATACCAAGTGAGGAAGACCCAACCTT  2434

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 2435  TGAAGACAACCCTGAAGTGCCTCCGCTGATTTGAAACATCTGGCTGCGTTGCCATTGGCTGAGACCCACCAGGT  2508

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 2509  CCAGTTTTGGTTGGTGTAGAGACCATATGCATATTATTCCTGGGATAAACACAGAGTTATTTGTCAATATCGCT  2582

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 2583  GCTCCAGTGTTTTAACTCTTACTTTGCATAGTAATATCCTTAAGATAGCTTAAAATTAAAATGTATGTCTTAAA  2656

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 2657  TGCTATAACTCATCATTTACCTATAATAAAGGGTTGGTATTGAAAATGTTTAGTAAGATCATAGAACTATTGCA  2730

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 2731  TAAAACACTGATTATAAATACTGTCTACTTATGCAAAGTATTAATTCATAGATAAAAGGACTGAGTATTAAATT  2804

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 2805  GGTACTTCAGCAAAGTGGTCAAGCTTAGAAGTTAAAACTGTAATTTCAGACCCAATTGGAATACTTTAATATGA  2878

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 2879  TTTTAAACAGCATTTCCATTTTCCTTCCCATGATGTGTCTGCTTTCTCTGGTGGCATGGTATAATGGCAAGAAT  2952

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 2953  ATGAGTTTTGAAACCAGACACTCTATATTTGGATTCCAGCTCAATCACTTTGTAAAGACCTTCAGCAAGTCCTT  3026

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3027  TAATTCTCTGAGCCTTAGTGGCTTCATGTATAATCTGGGAATAATAACACTTGCCTCACAGGTTTGTCTCAAGA  3100

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3101  TAAACTGCAGAAAGCACTTAGTACAGTGTCAGCCATACATTTAGAGCCTCTTCTCTCTCTCCTTCTTCCCTTTC  3174

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3175  TCCTCTCTCTTCTCCTCCCTTTCTCCTGTCTCTCCTCCTCCCTGCTCCTTCTTCCCCTCCCTCCCCAATTACTT  3248

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3249  TTCTCCCCTTATTCTTTTTCTTCACCTTTTTACTCCCCATCCCACTCCTTCTCCTCTATTTCCTTCTTTACTTT  3322

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3323  TTTAATATCCTACCTCTTCTTTATCTAGAACATTATGAATTCAATATTTCACATACATTGTAGGACAAATTACT  3396

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3397  GTTACTCTGATCATGATATAGCAACATTTAAGTCAGTTTCCCCAAATATTCATTCAACAAATACTTATTGAGCA  3470

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3471  ACTATTGAGTGCTAGCCCCCTCTCTGTTCATCAGGGATTTAGTAGTAACAAAGCAGACAAATACATACACACAG  3544

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3545  ACTATGTCAGGTGGTGTTCAGAGCTGTGAAGGAGAGTCAGAGTGAGGGAATCAAGGGTGATGGGTGCTTTTTCA  3618

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3619  GACAGGGCCTTTCTCTATTAAACAGGCTTCCAGTGGAAGACTCTGCTAATGTTTAGCAGATAACCAAAATGCAT  3692

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3693  CAGTTAGAAAAAAATATGATGAGAATGAGGGACTGGTTATAGGAATGCAATTGGGCACAAATGTGGGAAGAGCT  3766

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3767  GGGTAGTGAAGCTCTAGAAGGGAGAGGTAGAGAATTGGAAGAAGAAGCACTGGTACAGGTAGACAATTCAGAAC  3840

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3841  TTGCACAGAATCTGAGAAGCTGAAGTAGGACTGTGATTGGGAGCTTGTGGAGAGGTCTATGGAAATTATCATGC  3914

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3915  TGCTGAAATTGTTGCCTCTATTTATCTGCTACCCTTCTGGTCCGTGGCCAAGATCCTGGTGGGTGGGCTTGGAG  3988

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3989  CCAGCCTTCGTCAGCAGGCCTGCGGTAAGAAAGATGGGATGGACACACAGTGGTGGAGATCAAGGATCAGCTGC  4062

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4063  AGCAGGCTGGGTCCCTCTGCATCTGTCCATCACTGCGACTGATGGCAATGACTGAGTATAACACCTTTCTTCAT  4136

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4137  GGTCAACTCTACCCAGGAACCACGTAGGGAAGGAAATTCTGGAAAACAGCTCCCAGCCTTAGCCAACTTGACAT  4210

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4211  ATCATAATCCAACAGAACTCAACCTCTACCAACTTGGAAATCATGTACATTTGTCAGGACTGTATTTAATTTCC  4284

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4285  ACATAGAGAGAAAGCAAAATTATACTTTTGACCAAACTAATAGAATTATCCATTAAACAAACAAAACTGTGCCA  4358

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