Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_13781
- Subject:
- NR_136510.2
- Aligned Length:
- 4626
- Identities:
- 242
- Gaps:
- 4353
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ACTTTTGATGGGTTCCGGGTCCCAAAAGGGTTCGAGGCCTCTTGCCTTCGCTCCGTAGGAGGGAGTTCTCTTCT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GGCCCTGGGGGCCGCAGGACTGTCCAGGAATACAGTTTCCAGGTGAGATCTTACTTGAAACACCGGTAGTTCTA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GCACAGCTAAAATGGCATCTACTTGGGCTATCCAGGCCCACATGGACCAGGATGAACCTTTGGAAGTAAAGATA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GAGGAAGAGAAATATACCACCAGACAGGATTGGGACCTGCGTAAAAACAACACCCATAGCAGAGAGGTCTTCCG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TCAGTACTTCAGACAGTTCTGCTACCAGGAGACATCTGGTCCCCGTGAGGCTTTGAGCCGACTCCGAGAACTTT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GCCATCAGTGGCTGAGGCCAGAGACCCACACCAAAGAACAGATTCTGGAGCTGCTGGTGCTGGAGCAGTTCCTG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 ACCATCCTACCTGAGGAGCTCCAGGCCTGGGTGCAGGAGCAGCATCCAGAGAGTGGGGAGGAGGTGGTGACTGT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GCTGGAGGATTTAGAGAGAGAACTGGATGAACCAGGAGAGCAGAGTGAGTCTGTCAGCTACATCTCATTTTCCT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CAGGTCTCAGTCCACACTGGGGAACAGGAAATGTTCTTGCAGGAGACGGTACGTCTACGAAAAGAAGGAGAACC 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 CAGTATGTCCCTCCAGTCCATGAAAGCCCAGCCAAAGTATGAATCTCCAGAACTTGAATCCCAACAGGAGCAAG 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 TTTTAGATGTTGAGACTGGAAATGAGTATGGGAATTTAAAGCAAGAAGTTTCTGAAGAAATGGAACCACATGGG 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 AAGACATCCAGTAAATTTGAAAATGATATGTCCAAGTCTGCTAGGTGTGGAGAAACTCGTGAACCTGAAGAAAT 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 AACAGAAGAGCCCTCTGCTTGCTCCAGAGAAGATAAACAACCTACCTGTGATGAAAATGGAGTAAGCCTGACTG 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 AGAACTCTGACCATACTGAACATCAGAGAATCTGTCCAGGAGAAGAATCTTACGGATGTGATGACTGTGGAAAA 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 GCTTTTAGTCAGCACTCACACCTCATAGAACATCAGAGGATCCATACTGGAGATAGACCCTACAAATGCGAAGA 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 ATGTGGAAAAGCTTTCCGTGGGAGAACTGTGCTTATTCGACACAAAATAATACACACTGGAGAGAAACCGTATA 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 AGTGTAATGAATGTGGCAAAGCCTTTGGCCGGTGGTCAGCTCTTAACCAACATCAGAGACTTCACACAGGAGAA 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 AAACACTATCACTGTAATGACTGTGGCAAAGCCTTTAGTCAGAAAGCAGGCCTCTTTCACCATATCAAGATCCA 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 CACAAGAGACAAACCTTATCAGTGCACTCAGTGTAATAAAAGTTTTAGTCGGCGTTCCATACTTACTCAGCATC 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 AAGGAGTTCATACCGGCGCCAAGCCGTATGAGTGCAACGAGTGTGGAAAAGCCTTTGTTTATAACTCATCCCTT 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 GTTTCCCATCAGGAAATCCACCACAAAGAAAAATGCTATCAGTGTAAGGAATGTGGGAAATCCTTCAGTCAGAG 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 TGGCCTTATTCAGCATCAGAGAATTCACACTGGGGAAAAACCCTACAAATGTGACGTATGTGAAAAAGCCTTTA 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 TTCAAAGGACAAGTCTTACAGAACATCAGCGAATTCACACTGGAGAAAGACCCTATAAATGTGATAAGTGTGGG 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 AAGGCGTTTACTCAAAGATCAGTCCTCACGGAACATCAGAGAATCCACACTGGAGAGAGGCCCTACAAGTGTGA 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 TGAGTGTGGGAATGCCTTCCGAGGAATCACCAGCCTCATTCAGCATCAGAGAATCCACACTGGGGAGAAGCCCT 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 ACCAATGTGATGAGTGTGGAAAAGCCTTCAGACAGAGGTCAGATCTTAGTAAACACCAGAGAATCCATAATAGA 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 CGTGGTACCTATGTATGTAAAGAGTGTGGGAAATCATTCAGGCAGAACTCAGCTCTTACTCAACATCAGACTAT 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 CCACAAAGGAGAAAAATCTGTTTCTGTGTGATGACTACAGGGAAGTTATCTCACAGAGTTCAGGCCGGTAAACA 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 AGACATTAAGTGTTTAAGGCAAAAAGCATGGAGAGGTTGGGGAAGAGCCAAGTTTCTAAAGTAATGAAAAGTGA 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 GGAAGAAGACCAGCTACAAGGAAATACTTCTGAAAAATCACTCTGAACCCCAAGCTGGAGTGAATCTTCTCCTG 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 AGCTCTCTCATTCCAGAATGGCAATCTTGTTTCAGGAGAGATCTCTAATAGTGACTGATGGTAAAGGAAGAAGG 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 CTGTGCCTAGAACAAAGAATCAGGCTGGCAAAGAAATCACAGGTCTTTCCTCAAACTTTAAATTGCTACTCTCT 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 GGAGATAGCTACCTGGACTTTACAGAGCTGTCAGAAGACTTGGGAAGGTTTGCCAGCATTGGAAAAAGCCACTT 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 GGACTTCACAGAGCTGTCAGAAGACTTAGGAAGCTTTGCCAGTAGTTCCTGAGACCAGAAATACATATTATGAA 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 GCAGGTGCTGGAACAGGCCCTGGCCCCTACTTGTGAAGCTGCAGATATAGATGGTGTTACTGAGAAGGAAACTA 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 AGGACTTGGCTCCAAAACAAAACAAAACAAAATCTGGAGATGCTGAATTTTGTTGGGGGGAATGTCTGTAGAAC 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 TGCAACATCAATGCAGTAAGTGTAGTAAAAGCTTTAGTTTATGGTGAGTCATTACTCAGCATCATGGAGTCCAC 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 GATGAAGAGAATCTCTTTTCAATCTGTGCAATCAACAAGTTTTTGAAAGGCTTTTGTTTATAGTGGAACCCTCT 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 TTTCCCCCTAGAAGAACCACCACAAGGAAAAATGCTGTCACCATAAGGAATGTGGGAAAGTTTTCAGCCACATG 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 GCCTTATTTGACTTCAAAGAATCCACATGAGAGAGAGACTGCATAAATGTAATAACTGAGGAGGCCTTTGTTCA 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 GCAAAGAAACCTTATACAAACTCGTATAAAGAATGTAGGAAGACCTTCACCCAGAAGCCAGGACTGACTGTGCA 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 CCAGAGAATCTGCACAATAAACATGATGAATGTGGAGATGCTTGCTTCAGCATTGGAGAATTCACAGTAAAGGG 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 AAACCCTGCCAGTGTGATGAGTACGGAAAAGTCTTCAGAGGTTGGAACTTGGGAAAAATCAGTGAGTGAATTCA 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 TATTAGAGAGGCTCTTATAAATGAGAGGATTGTGGAAACTTGTATAGACAGAGATCAGACCTCAACAAGGGAGC 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 CTCCACAGTATTGAAAAGTTAATATAATTAATGTAAGTGGGCAAGTTGTATGGGGAATGGGTAGTCTAAATTGC 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 TCATTTTAGCCAGTAAAAACATTAAATTAGTTTCTTAGATCAAGAAAAGGAAATGTTAGAAGTTATTTTTCCCT 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 TCCAGAGGGGTCTATATGTGTAAGCAACCAGGACTTTTGAAATAAGTTGCATCTCTGGATTTGTGATCTGTCTC 3478
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3479 CTGGATGATTATCTCTGTTTTGGGAGACAGGTATTTTTTCTTCATGCCTGCTCTAGTCTCATCTCATATCTTTA 3552
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3553 ATTCATTCAGCAAGTATACACAATAGTATTATCGTCTACTGTTTGTTGTAAATATATATATATTATTTTCTTTT 3626
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3627 TGGTCTGAGTAGGCTTGTATTGGTACCCTAGGACATAAAAATCACATATATCATGTTTCAGTAAATGCAGTGAA 3700
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3701 AGGAACTATATTATTAAATTGCTGGGAATTTCTGTAAATTTGAGACTACCTTTATATTCTCCAACACAAGACCG 3774
Query 1 ------------------------------------------------------------------ATGGAGTC 8
||||||||
Sbjct 3775 TGTAGGTGTCCCTTCAGAGAGTATATTTTTCTAGCTTGGCTTCTTTATTTTCTTTATTTTTTTGAGATGGAGTC 3848
Query 9 TTGCT-CTGTCACCCAGGCTGGAGTGCAATGGCGCGATCTCCACTCACTGCAACCTCTGCGTACCAGGTTCAAG 81
||||| |||||.|||||||||||||||||||||.|||||||..||||||||||||||.||.|.|||||||||||
Sbjct 3849 TTGCTCCTGTCGCCCAGGCTGGAGTGCAATGGCACGATCTCGGCTCACTGCAACCTCCGCCTCCCAGGTTCAAG 3922
Query 82 CGATTCTCCTGTCTCAGCCTCCTGAGTAGCTGGGATTACAGG----TGCCCACCA---CCACAGCTGGCTAATT 148
.||||||||||||||||.||||.||||||||||||||||||| || |||||| ||| |||||||
Sbjct 3923 TGATTCTCCTGTCTCAGTCTCCCGAGTAGCTGGGATTACAGGCACTTG-CCACCATTCCCA------GCTAATT 3989
Query 149 TTTGTATTTTTAGTAGAGACTGGGTTTTACCATATTGGCCAGACTGGTCTCGAACTCCTGACCTCAGGTGGTCC 222
||||||||||||||||||||.||||||.|||||.||||||||.||||||||||||||||||||| .|||.||.
Sbjct 3990 TTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCT--TGTGATCT 4061
Query 223 GCCTGCCTTGGCTTCCCAAAGTGCTGGGATTATAGGAGTGAGCCACTGCGCCTGGCCATT-------------- 282
|||..|||||||.|||||||||.|.|||||||.|||..||||||||...|||.|||..||
Sbjct 4062 GCCCACCTTGGCCTCCCAAAGTTCAGGGATTACAGGCATGAGCCACCATGCCCGGCTGTTTTTTTAAGATAGAA 4135
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4136 AAATATACTTCATGTATAGCCTATTGACAGATAATGACTGATATTTTTTCTTATAGATAACACATAATAAACAT 4209
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4210 TGTGAAGACTAATAAGTAACTTGCTTATTCTTTTCAGTTCTAAAACCTGTAGGAAAGAATCTTTAGAAGCTGTC 4283
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4284 AACAAGTTGATAATGTAGCCCAATCTCTACCCATGATAGGAGAGTAAGGCTTATATATTTTATAGTAGGGCACT 4357
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4358 AAATACAGGAACCATGTATTTAAAAACTTTTTAGTGATTATCTCAGAATTCTAGGTGTCCCTCTGCTGTACATC 4431
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4432 CCTAAATTTTTTGCATAGGTATTATTAATAAATTCATTATTTTCAAAGATGGACTGTGTTCTGTAAAAAGCTTT 4505
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4506 TCCAGTATCTGCAAATCACACAGTTTTTTTTAACTCTATTACTATTATATAAAATGATTTCTTAATATTGAACC 4579
Query 283 -------------------------------------- 282
Sbjct 4580 AACCTTGCATTCCTAGAATAAACCTCACTTAGCCATGA 4617
