Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_13781
- Subject:
- NR_136512.2
- Aligned Length:
- 4544
- Identities:
- 242
- Gaps:
- 4271
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ACTTTTGATGGGTTCCGGGTCCCAAAAGGGTTCGAGGCCTCTTGCCTTCGCTCCGTAGGAGGGAGTTCTCTTCT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GGCCCTGGGGGCCGCAGGACTGTCCAGGAATACAGTTTCCAGGTGAGATCTTACTTGAAACACCGGTAGTTCTA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GCACAGCTAAAATGGCATCTACTTGGGCTATCCAGGCCCACATGGACCAGGATGAACCTTTGGAAGTAAAGATA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GAGGAAGAGAAATATACCACCAGACAGGATTGGGACCTGCGTAAAAACAACACCCATAGCAGAGAGGTCTTCCG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TCAGTACTTCAGACAGTTCTGCTACCAGGAGACATCTGGTCCCCGTGAGGCTTTGAGCCGACTCCGAGAACTTT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GCCATCAGTGGCTGAGGCCAGAGACCCACACCAAAGAACAGATTCTGGAGCTGCTGGTGCTGGAGCAGTTCCTG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 ACCATCCTACCTGAGGAGCTCCAGGCCTGGGTGCAGGAGCAGCATCCAGAGAGTGGGGAGGAGGTGGTGACTGT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GCTGGAGGATTTAGAGAGAGAACTGGATGAACCAGGAGAGCAGAGTGAGTCTGTCAGCTACATCTCATTTTCCT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CAGGTCTCAGTCCACACTGGGGAACAGGAAATGTTCTTGCAGGAGACGGTACGTCTACGAAAAGAAGGAGAACC 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 CAGTATGTCCCTCCAGTCCATGAAAGCCCAGCCAAAGTATGAATCTCCAGAACTTGAATCCCAACAGGAGCAAG 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 TTTTAGATGTTGAGACTGGAAATGAGTATGGGAATTTAAAGCAAGAAGTTTCTGAAGAAATGGAACCACATGGG 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 AAGACATCCAGTAAATTTGAAAATGATATGTCCAAGTCTGCTAGGTGTGGAGAAACTCGTGAACCTGAAGAAAT 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 AACAGAAGAGCCCTCTGCTTGCTCCAGAGAAGATAAACAACCTACCTGTGATGAAAATGGAGTAAGCCTGACTG 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 AGAACTCTGACCATACTGAACATCAGAGAATCTGTCCAGGAGAAGAATCTTACGGATGTGATGACTGTGGAAAA 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 GCTTTTAGTCAGCACTCACACCTCATAGAACATCAGAGGATCCATACTGGAGATAGACCCTACAAATGCGAAGA 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 ATGTGGAAAAGCTTTCCGTGGGAGAACTGTGCTTATTCGACACAAAATAATACACACTGGAGAGAAACCGTATA 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 AGTGTAATGAATGTGGCAAAGCCTTTGGCCGGTGGTCAGCTCTTAACCAACATCAGAGACTTCACACAGGAGAA 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 AAACACTATCACTGTAATGACTGTGGCAAAGCCTTTAGTCAGAAAGCAGGCCTCTTTCACCATATCAAGATCCA 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 CACAAGAGACAAACCTTATCAGTGCACTCAGTGTAATAAAAGTTTTAGTCGGCGTTCCATACTTACTCAGCATC 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 AAGGAGTTCATACCGGCGCCAAGCCGTATGAGTGCAACGAGTGTGGAAAAGCCTTTGTTTATAACTCATCCCTT 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 GTTTCCCATCAGGAAATCCACCACAAAGAAAAATGCTATCAGTGTAAGGAATGTGGGAAATCCTTCAGTCAGAG 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 TGGCCTTATTCAGCATCAGAGAATTCACACTGGGGAAAAACCCTACAAATGTGACGTATGTGAAAAAGCCTTTA 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 TTCAAAGGACAAGTCTTACAGAACATCAGCGAATTCACACTGGAGAAAGACCCTATAAATGTGATAAGTGTGGG 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 AAGGCGTTTACTCAAAGATCAGTCCTCACGGAACATCAGAGAATCCACACTGGAGAGAGGCCCTACAAGTGTGA 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 TGAGTGTGGGAATGCCTTCCGAGGAATCACCAGCCTCATTCAGCATCAGAGAATCCACACTGGGGAGAAGCCCT 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 ACCAATGTGATGAGTGTGGAAAAGCCTTCAGACAGAGGTCAGATCTTAGTAAACACCAGAGAATCCATAATAGA 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 CGTGGTACCTATGTATGTAAAGAGTGTGGGAAATCATTCAGGCAGAACTCAGCTCTTACTCAACATCAGACTAT 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 CCACAAAGGAGAAAAATCTGTTTCTGTGTGATGACTACAGGGAAGTTATCTCACAGAGTTCAGGCCGGAAGAAG 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 ACCAGCTACAAGGAAATACTTCTGAAAAATCACTCTGAACCCCAAGCTGGAGTGAATCTTCTCCTGAGCTCTCT 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 CATTCCAGAATGGCAATCTTGTTTCAGGAGAGATCTCTAATAGTGACTGATGGTAAAGGAAGAAGGCTGTGCCT 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 AGAACAAAGAATCAGGCTGGCAAAGAAATCACAGGTCTTTCCTCAAACTTTAAATTGCTACTCTCTGGAGATAG 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 CTACCTGGACTTTACAGAGCTGTCAGAAGACTTGGGAAGGTTTGCCAGCATTGGAAAAAGCCACTTGGACTTCA 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 CAGAGCTGTCAGAAGACTTAGGAAGCTTTGCCAGTAGTTCCTGAGACCAGAAATACATATTATGAAGCAGGTGC 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 TGGAACAGGCCCTGGCCCCTACTTGTGAAGCTGCAGATATAGATGGTGTTACTGAGAAGGAAACTAAGGACTTG 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 GCTCCAAAACAAAACAAAACAAAATCTGGAGATGCTGAATTTTGTTGGGGGGAATGTCTGTAGAACTGCAACAT 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 CAATGCAGTAAGTGTAGTAAAAGCTTTAGTTTATGGTGAGTCATTACTCAGCATCATGGAGTCCACGATGAAGA 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 GAATCTCTTTTCAATCTGTGCAATCAACAAGTTTTTGAAAGGCTTTTGTTTATAGTGGAACCCTCTTTTCCCCC 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 TAGAAGAACCACCACAAGGAAAAATGCTGTCACCATAAGGAATGTGGGAAAGTTTTCAGCCACATGGCCTTATT 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 TGACTTCAAAGAATCCACATGAGAGAGAGACTGCATAAATGTAATAACTGAGGAGGCCTTTGTTCAGCAAAGAA 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 ACCTTATACAAACTCGTATAAAGAATGTAGGAAGACCTTCACCCAGAAGCCAGGACTGACTGTGCACCAGAGAA 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 TCTGCACAATAAACATGATGAATGTGGAGATGCTTGCTTCAGCATTGGAGAATTCACAGTAAAGGGAAACCCTG 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 CCAGTGTGATGAGTACGGAAAAGTCTTCAGAGGTTGGAACTTGGGAAAAATCAGTGAGTGAATTCATATTAGAG 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 AGGCTCTTATAAATGAGAGGATTGTGGAAACTTGTATAGACAGAGATCAGACCTCAACAAGGGAGCCTCCACAG 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 TATTGAAAAGTTAATATAATTAATGTAAGTGGGCAAGTTGTATGGGGAATGGGTAGTCTAAATTGCTCATTTTA 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 GCCAGTAAAAACATTAAATTAGTTTCTTAGATCAAGAAAAGGAAATGTTAGAAGTTATTTTTCCCTTCCAGAGG 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 GGTCTATATGTGTAAGCAACCAGGACTTTTGAAATAAGTTGCATCTCTGGATTTGTGATCTGTCTCCTGGATGA 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 TTATCTCTGTTTTGGGAGACAGGTATTTTTTCTTCATGCCTGCTCTAGTCTCATCTCATATCTTTAATTCATTC 3478
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3479 AGCAAGTATACACAATAGTATTATCGTCTACTGTTTGTTGTAAATATATATATATTATTTTCTTTTTGGTCTGA 3552
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3553 GTAGGCTTGTATTGGTACCCTAGGACATAAAAATCACATATATCATGTTTCAGTAAATGCAGTGAAAGGAACTA 3626
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3627 TATTATTAAATTGCTGGGAATTTCTGTAAATTTGAGACTACCTTTATATTCTCCAACACAAGACCGTGTAGGTG 3700
Query 1 ----------------------------------------------------------ATGGAGTCTTGCT-CT 15
||||||||||||| ||
Sbjct 3701 TCCCTTCAGAGAGTATATTTTTCTAGCTTGGCTTCTTTATTTTCTTTATTTTTTTGAGATGGAGTCTTGCTCCT 3774
Query 16 GTCACCCAGGCTGGAGTGCAATGGCGCGATCTCCACTCACTGCAACCTCTGCGTACCAGGTTCAAGCGATTCTC 89
|||.|||||||||||||||||||||.|||||||..||||||||||||||.||.|.|||||||||||.|||||||
Sbjct 3775 GTCGCCCAGGCTGGAGTGCAATGGCACGATCTCGGCTCACTGCAACCTCCGCCTCCCAGGTTCAAGTGATTCTC 3848
Query 90 CTGTCTCAGCCTCCTGAGTAGCTGGGATTACAGG----TGCCCACCA---CCACAGCTGGCTAATTTTTGTATT 156
|||||||||.||||.||||||||||||||||||| || |||||| ||| |||||||||||||||
Sbjct 3849 CTGTCTCAGTCTCCCGAGTAGCTGGGATTACAGGCACTTG-CCACCATTCCCA------GCTAATTTTTGTATT 3915
Query 157 TTTAGTAGAGACTGGGTTTTACCATATTGGCCAGACTGGTCTCGAACTCCTGACCTCAGGTGGTCCGCCTGCCT 230
||||||||||||.||||||.|||||.||||||||.||||||||||||||||||||| .|||.||.|||..|||
Sbjct 3916 TTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCT--TGTGATCTGCCCACCT 3987
Query 231 TGGCTTCCCAAAGTGCTGGGATTATAGGAGTGAGCCACTGCGCCTGGCCATT---------------------- 282
||||.|||||||||.|.|||||||.|||..||||||||...|||.|||..||
Sbjct 3988 TGGCCTCCCAAAGTTCAGGGATTACAGGCATGAGCCACCATGCCCGGCTGTTTTTTTAAGATAGAAAAATATAC 4061
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4062 TTCATGTATAGCCTATTGACAGATAATGACTGATATTTTTTCTTATAGATAACACATAATAAACATTGTGAAGA 4135
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4136 CTAATAAGTAACTTGCTTATTCTTTTCAGTTCTAAAACCTGTAGGAAAGAATCTTTAGAAGCTGTCAACAAGTT 4209
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4210 GATAATGTAGCCCAATCTCTACCCATGATAGGAGAGTAAGGCTTATATATTTTATAGTAGGGCACTAAATACAG 4283
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4284 GAACCATGTATTTAAAAACTTTTTAGTGATTATCTCAGAATTCTAGGTGTCCCTCTGCTGTACATCCCTAAATT 4357
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4358 TTTTGCATAGGTATTATTAATAAATTCATTATTTTCAAAGATGGACTGTGTTCTGTAAAAAGCTTTTCCAGTAT 4431
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4432 CTGCAAATCACACAGTTTTTTTTAACTCTATTACTATTATATAAAATGATTTCTTAATATTGAACCAACCTTGC 4505
Query 283 ------------------------------ 282
Sbjct 4506 ATTCCTAGAATAAACCTCACTTAGCCATGA 4535
