Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_13781
- Subject:
- NR_158171.1
- Aligned Length:
- 7016
- Identities:
- 231
- Gaps:
- 6756
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CACTTCTCTGACTGGATGCACTGTGCGGAGGACACAGCTAAGGGCTGTGAAAATTCAAGAATAAAGAAAAGTCC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TGCCTTCACGCAGCTCGCACTGTGAGGAGGTTTAATCAGGGATGTCTGGCCGGGACCTTCAACAGTATCAGAGT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CAGGCTAAGTAACTCTTTCGAAAGTTGAATGAACAGTCCCCTACCAGATGTACCTTGGAAGCAGGAGCCATGAC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TTTTCACTACATTATTGAGCAGGGGGTGTGTGATTTGGTTTTATGTGAAGCTGCCTTCCCTAAGACGTTGGCTT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TTGCCTACCTAGAAGATTTGCACTCAGAATTTGATGAACAGCATGGAAAGAAGGTGCCCACTGTGTCCCGACCC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TATTCCTTTATTGAATTTGATACTTTCATTCAGAAAACCAAGAAGCTCTACATTGACAGTTGTGCTCGAAGAAA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CCTAGGCTCCATCAACACTGAATTGCAAGATGTGCAGAGGATCATGGTGGCCAATATCGAAGAAGTGTTACAAC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GAGGAGAAGCACTCTCAGCATTGGATTCAAAGGCTAACAATTTGTCCAGTCTGTCCAAGAAATACCGCCAGGAT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GCGAAGTACTTGAACATGCATTCCACTTATGCCAAACTTGCAGCAGTAGCTGTATTTTTCATCATGTTAATAGT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 GTATGTCCGATTCTGGTGGCTGTGAAATAATGAATACAGTCACTGGTAAGGGAGAACCTAGAACCCAGTAGGTG 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 TATATTTTCAGGAAACTGAGCTCACAGAGATGTGTATTAGAATCCAAGTGGAACTTCTGCCTCTAAAGACCTTG 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 CAAGAAAAGAGATGTCCTGAAAATGAAAGGTTGCACCTCATTTAATGAAGCTTAACCCTATGTAGAAAGTCTCT 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 TTCGGGGGCAGAGGCTTTCTCTGGGTGCCAAGCCATATATATTAGGGAATAGTAGATTGTTATTTCGTTTTTTC 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 CCTCCCAGTGCATTTTAAAAACAGCACTGGCTGGGCATTCTCATTCTCTGATGGAGCCATCAATGAGATTTAAC 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 TTAGTCAACCTGTGCTAGCAACATTCTGAAATTCCTTCAAAGAAGGCAGTCCTTTGGGAAGGTGTTTTTTTTTT 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 TTTGTTTTTTTGTTTTTTTGTTTTTTTTTGACTCTAATCAACATTCCTTTTGTTGGTGACATTTGTGATTTTCA 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 GTAATCTGAGTTTTTGATGGCCTTTTAAACAAGACTCCAGTATGTGAAGGTTAATTGCTGTGCTCCACAGATCT 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 TGTCTATTGGCCCCTGTAGAAAGTTAACCTTTGTTGTTTTCCTTTTATAATTTGCTTATTGCACAATTGCTTTA 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 GGGTAAGTGAATTATATTAAGATGCCTTGAAATTATAGCACTCCTTGATTAAGAAGCTAAAATGTTTCTCTCAT 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 TTACTCCTTAAACAAAAGACTTAAATTAGTTTGGGTCATTATTACTTTTATTTTGCAGCATTTGGTTTGTTATT 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 AGTGTAAGAGCAAGTATAGGATATGGAGAGGCCCCTGGCTTCATGAGAACAAAGGCAGGCCCAGGTTATAATTA 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 CAGCTTTCTCCTGCCCCTTCTTTACTTTCTCTACCACAGTTTTCTCCGCTGTTTGTTTTCCTCTTGCCACAATT 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 TGCTAACACTTAAAAAATTTTCCTGCACCCAGTAGTTTCATATCCTGTAGACATCCTCTTAGGACATTCTCAAA 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 TTTCAAAATAAAAAATATTCATCTATGTAGTTAATTAAAGTTAAAGTTTCTGCAGATCAACTACTCAAACTACT 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 AAATACATTTACCTGAGAAAAAGTCTCTGAGAGCACTTCATTCCTGTTTTAGTTCGTGTAAATTCTCTGAGAAT 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 GTTCTGGAGATAGATAACTCATTTACAGTGGTTTCTATTAACTAATTAAAGTACCCATGATTTTTTCCTTTTCT 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 GCTCAGGGATGATGGAGATTTCCTTTTACCTTTTTTAATGGGGTAAATTTTTTAATGGGGAAAATAGGCCTTTT 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 AAATATTATTGCCAGGGTCTGCAATATAACTTAAAATTCCTGTACATACTGCAAATATTTCTTTAAATTGCACA 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 GGAAAATGAGCGAACTTTTTATTTCTTAATATCTTTGGCAAAAAACTTTAACCAGTAAGCAATTTTATAACCCT 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 GAGGGATCATCAAAGATACTATCCTGATTCCTGGTAAGGAAAAATATATTATTTCCTTATAACAAGGCAAGGAG 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 AAATGCTATTTTATTCCTGATAATTTATATAGCTAGAATAATTTTTTTCCTTTCTTTTATGGACCTAAATCTGC 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 CAATTGGGAATTTTGTGCATGAAATATGAAGTTACTTTTTATAGATAATCAGTGCTTTTAAGTCCCTAAAAGGC 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 TCCTGCTGAAGTAATGATGAAGTTCATAATAAAAGCCTTTGAAAGGCTGAAAACCTACATAGTGGTACCATAGT 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 ATTTGGAGCTTCTATAGGAGTGGAGAGGGGCAGCTCATTGTTGAGAGTTGCATGCTGCAACCTAATGGTCAGCA 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 ATGAAAGAAATACTTGTAGAATGTTCACTTCAGTGTGAAGTTTTGTTATCTAGTTAATTTATATACATATATCC 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 TTTGTAGATACATTTCTATCTAATCTTGTTGAGCTAATTAAGAAATAAGGGGTGGGGTAATTGTCAACAAAGGG 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 AGAAGAAAGTGGTTTAAGATCAGGGCAGCAGAAAAATTAGAGAACAAGAATATCATAATATGGCTCCTGGTTTT 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 CTTTATAAGAGGCAGTGGGAAGATCTGACTAGATGAAATGTATCATCAACCAAACTGGCATCTAAAATAGAATG 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 GGATAAATACTGTATGGGGTTATTGGAGGCATATTAAGAAAGGACACCTAATTTATTTTGGGAAGAAGTATGTT 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 AAGAGAAGACTTTCTAGAGAAGGAGAATGGGGCATTCTAGGAAGAGTCAATGGCATGTGCAAAGGCATGAATAA 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 AGACAGTGAGGCATGTTTTGGAAATGTAACAGCTTGATTCAGCTTAGCCCATAGGGTAAGCATAGACAACAGAG 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 GAGACTTGAGGAATGAGAACTAGATGGGTACACTATCATAAAGGGACTTGTCTATCATGCTGAGGAGTTTAGAC 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 CATCTTAATGGTAGTGGCCAAGGATGGCATCAGATTTATAGTTTCAAGTGATCATAATATTGGCATAAAAGATA 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 TATTAGGGAGGAAGCCTGAAGTAGGGAGATGAAAATAAGGAGCCATCAAAGGCAGAATGAAACTTAGGCAGATT 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 TCAAGTGATTTTCAAAAATGATGTGATCAGAGGTACCAGATAATAACTATTACATAACACTTTCTTTGTTAGGA 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 GCTTATTTCTCACACTGACCAAAGCTTTTGAAGTAAGTACTCTTTACACCACTATATAAATAAACCTTACAAAG 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 GATTCTGCTTTGAGGCATGAGAGAGTTAAGTCATTTGCCCAAAGTCACAGAGTTAGAAAGTAATAGAGCTAAGA 3478
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3479 TTTGAACCTAGGCAGTTTGGCTCCAGAGTCTGTGCTCTTACACTATATTACCACCAAGAGGTCAAATAAATACC 3552
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3553 AAAGAATGTATTTTCGAATTTAACAATGAGGAACTTAATCATACAGGCAGAAGTAATTCCAGAGCACCGGAGAC 3626
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3627 AGAAGCCAGATTGCCATATGGGTTAAAGAGTGTGTAAACCACTAGGAAGTAAAGACATAGAACTACTCTCACAA 3700
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3701 GTGCTTTTCTGGTTATTGTGACGCTGAACTTCATGGCTTGTTTTAATTAAGACATCTTACAAGTGTCAAAATTT 3774
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3775 GGAAATATTTGGACACTGTACACTCTGGTTATTTAAATATCTAACAGTGGTTCTTGAGCATTTTGAGAAACCTT 3848
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3849 TGAAAATCTGATGAAAGGTATGTGCCATTACTCTAGAAAAATGTTCCTGTGTACATGCACATCAAGTATCACAT 3922
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3923 ACTGTTTCAGGCTGTTCAAAGACTACAAAGTCTGTTCATGACCTAATGGTCCATGTTCCCTCAGTTAAGAGCTC 3996
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3997 CAGAGATAAAGGATGTGGAACTCAAAGGTAAGTACCCAGAGCCTTGAAAACTCCATTTGTGACTTGGAAGAATT 4070
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4071 CTACAATTTGAATTAACTTTGTGGAGAGAGATATATTTTTGAAAAATTGTGTGTACCAAAAAAATTTCATATCA 4144
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4145 AATAATATTTTCCTGTAGTGCATTCAAGGATCTGGTTCCACAGCAAAAAATTGTTTTGGTCTCAGTTCCTCAAA 4218
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4219 ATCACATTTAAGGAGCTTGAGATTTATATTTTCTACTTAATAAGTCTTACAAAAGCAAGTTAAGAAGGAAAATG 4292
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4293 GACAATCATTTCTGCACATGTAGGGTTTAATAAAACATGTATAATGAAATATTTCATATTTTAAATTTCCACCT 4366
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4367 TATTGGTAGCTTTCATGACAAAGGGCTAGGGTGCTGGTGGCCATACAATTAAGGTTTTTGGTTAGTTAGTTAGC 4440
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4441 AGAACTAACTGACTCCTACCTGGTGGGTTTTTCTTTTGTTTGTTTGTTTGGTTGGTTGGTTTTTTCCCAGATGG 4514
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4515 CTCAGGAGGAAGGTAAATAGCAGTCATTGTATGTGTGACAGAGTTTGAGATAGAATGAGCATATTGAATCCCAC 4588
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4589 ATCCTGTTCTTATTACTGTCAGGCAGCGTTGACCTAGCAGTATAAAACTATCTGAAGCAATGTAGTCACTCAGT 4662
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4663 TCTCATAAAGTTTATTTCAAGTACTGTAACAATTCATGTTTGGATTAGAAAAGTCACTAGAAATTTGACTTCCA 4736
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4737 TATAGTAATCTATACTTTTTTCTCTCATTTCCTTCATTTTTTGAGCCGTAAGTGTAAGGCATTTTGGTGGTATT 4810
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4811 ATTACAATGGTTATGAGGAGTTTCTTTGCTTGCCCAAGGTCACATAGCTAGCAAGTTAAAGTAGATTCAAATCC 4884
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4885 AGGCCTGCTAGATACCAAATTATTATTTAAGAGTACTTTTCACTACTCCTAAATAATGACACAGATATGTTTGT 4958
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4959 CTTACACATTTCACTTTATTGTCAAGTTATTAGTATGTTTATTTTCAAAAGGTATTTTTTGCAATTTCTTTTTA 5032
Query 1 -------------------------------------------------------------------------- 0
Sbjct 5033 TTATTCCGTACTTTTTAAATTTACTTCATTATCACGTCTTCCTTTATTCTTTTTAAATAGTTTTTGCTTTTGTT 5106
Query 1 -------------------------------------------------------------------------- 0
Sbjct 5107 ATTTTGTTTTCCCTTTTTTACTCTTGGTTTGTAATACATCTTTCCTTATTTGCTCCTTTCTCATTTGATCTCAA 5180
Query 1 -------------------------------------------------------------------------- 0
Sbjct 5181 TGTTAATCCAACTGTTTTCCACATCTGATTCACTAAAATTTTAGCCCTTTAAAAAAAAATTCCTGTTTTTCCTA 5254
Query 1 -------------------------------------------------------------------------- 0
Sbjct 5255 TCTCCTTTTGCCCATTCTCTTCTCCTTGCCTCTCTTCTTTTATCTTTTTCCATTTTACTTTCATTTTTTGTTTC 5328
Query 1 -------------------------------------------------------------------------- 0
Sbjct 5329 TCTAGATGTTGTTTTGACATATGAGTTAATGTACTGGTACAATTTTGCATCTGTAAATTAGAGCTTCAGAATCA 5402
Query 1 -------------------------------------------------------------------------- 0
Sbjct 5403 ACTGAGTGTATTTATTCTTTATTTTTAGGCCTCAATTTATCTTACCTTTTATTGATTTTATAATATACTATACT 5476
Query 1 -------------------------------------------------------------------------- 0
Sbjct 5477 CTTTCATTTTAGTCTGCATATGTTAGCCAAAGAAGATATGCCCCTGTTTTAAGAAATCTCTGTAAAAAATGTCA 5550
Query 1 -------------------------------------------------------------------------- 0
Sbjct 5551 AGTGTGACAAGAATTCTTCAAGAAACAAGCTCCTCTAGTTTGTCTTCTATATTTAGAGCTTCAACAGTTACCTA 5624
Query 1 -------------------------------------------------------------------------- 0
Sbjct 5625 TATTACTGGTAACTCCCAAATATACCTTCAAACTTGTTTTTTGGGCCCAAGTTTTTTGCTTCATAGATATCTGT 5698
Query 1 -------------------------------------------------------------------------- 0
Sbjct 5699 TTTGAATATCCCATAAATAATTGCATCTAAAGCATACCTCCACTCCATTGTTCTCACAGATAAAACCAAACCTG 5772
Query 1 -------------------------------------------------------------------------- 0
Sbjct 5773 TGCTTCTTCTTATATTTCTAGTATTTAAGCGTCACCTGCCACCCCTTTACCTGAGCTACAAGTCACGCATTGCA 5846
Query 1 -------------------------------------------------------------------------- 0
Sbjct 5847 TTAGACTCCTCTGCTTTCTTCTTTCACCTCTAACTAGACTATTAACCAAAAATTTTTAAATATAACTTTCAAAA 5920
Query 1 -------------------------------------------------------------------------- 0
Sbjct 5921 GGTGGGGTTTTATTACATCATTTCCATCCTTTATGTTTGGGTTCGAGCCCTCATTAACTTTAACATGGATTCTT 5994
Query 1 -------------------------------------------------------------------ATGG--- 4
||||
Sbjct 5995 GGAGTACCCTCCTTACTGATTTTGTTACACGTGTCCCTCTTTTAGTCAGTACTACCATGATAATACCATGGATA 6068
Query 5 -----------------------AGTCTTGCTCTGTCACCCAGGCTGGAGTGCAATGGCGCGATCTCCACTCAC 55
||||||||||||||.||||||||.|||||||.||||||||||||..|||||
Sbjct 6069 ATAATTTTTTCATTTTTATTTTTAGTCTTGCTCTGTCGCCCAGGCTAGAGTGCAGTGGCGCGATCTCAGCTCAC 6142
Query 56 TGCAACCTCTGCGTACCAGGTTCAAGCGATTCTCCTGTCTCAGCCTCCTGAGTAGCTGGGATTACAGGTGCCCA 129
|||||||||..|.|.||.||||||||.||||||||||.||||||||.||||||||||||||||||||| ||
Sbjct 6143 TGCAACCTCCACCTCCCGGGTTCAAGTGATTCTCCTGCCTCAGCCTACTGAGTAGCTGGGATTACAGG----CA 6212
Query 130 CC-ACCACAG---CTGGCTAATTTTTGTATTTTTAGTAGAGACTGG-GTTTTACCATATTGGCCAGACTGGTCT 198
|| .|||||| |||||||||||||||.||||||||||||| ||| ||||.||| ||||
Sbjct 6213 CCTGCCACAGCTCCTGGCTAATTTTTGTGTTTTTAGTAGAGA-TGGAGTTTCACC---------------GTCT 6270
Query 199 CGAACTCCTGACCTCAGGTGGTCCGCCTGCCTTGGCTTCCCAAAGTGCTGGGATTATAGGAGTGAGCCACTGCG 272
.||||||||||||||| ||.|||.||..|||.|||.|||||||||||||||||||.|||..||.|||||||||
Sbjct 6271 TGAACTCCTGACCTCA--TGATCCACCCTCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGGGCCACTGCG 6342
Query 273 CCTGGCCATT---------------------------------------------------------------- 282
||.|||||.|
Sbjct 6343 CCCGGCCAATAATTTTTCTTTTTTTTGTGCTAATCATACTACATTTTCTTTAGAATAAAAGATCACATACTTCA 6416
Query 283 -------------------------------------------------------------------------- 282
Sbjct 6417 GTTTGCCATTCGCAGTCTGGCCCCATTGTGCCATTCTAGACTTACCTCCTGCCACTCCCCACCAGCTTTGTTTT 6490
Query 283 -------------------------------------------------------------------------- 282
Sbjct 6491 GTCTTAGCCACACAAAATAATCTAGCGTCTCTAACCAGTCAAACATTTTACCTTGTGCCTTGGCTCACTCTGTG 6564
Query 283 -------------------------------------------------------------------------- 282
Sbjct 6565 CCTTTTCTCCAGAATATCTTTCTGTGTACTTTTCTCCCATCCTTTTGCCTTTAAACCTGCTGCTATGGTTTGGA 6638
Query 283 -------------------------------------------------------------------------- 282
Sbjct 6639 TGTTGTTTGGCCCCTCCAAAACTCACGTTGTAGTTCAATTGCCAATGTAATAGTGTTGGAAGATGCTACTTTTA 6712
Query 283 -------------------------------------------------------------------------- 282
Sbjct 6713 AGAGGTAATTAGGTTGCTAAGATGGATTAACATCTTTCTCTTGACACTGAGACTGGGTTCTCCTGGGAATGGTT 6786
Query 283 -------------------------------------------------------------------------- 282
Sbjct 6787 AGTTCCCAAGAGAGTGAGTTGTTATAAAACAATGCTGCCTCTTCTATTTTGCACTTTTTGTTTGCACAAACTCG 6860
Query 283 -------------------------------------------------------------------------- 282
Sbjct 6861 GTCCCCTTCTGTTTCTCTATGATGTTTTGATGCAGCATGAGGCAGTCATGAGAACCCACCAGATACAGCTGCCT 6934
Query 283 ------------------------------------------------------------ 282
Sbjct 6935 GATCCTGAATTTCCCAGCCAACAGAACCAAGTGCTAAATAAAACTCTTTTTAATAAGTTA 6994
