Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_13781
- Subject:
- XR_001741631.1
- Aligned Length:
- 4015
- Identities:
- 239
- Gaps:
- 3745
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GCGGGGCCTCGGACCCCGCCCTCCGCCTTCCCCGGGATTCCGTGCTGTGCGGGCCGGGCGCTGGCGTTGGATTG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AGTTCTGTGAGTTGACTGGGCATTCTGCATCACAAGGTGTGGCTGGGCACTGGAACAGCCGAAGTCACCTGGGA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GCTGACTGGGTTGGACTGTCCAGGATGGTTCACTCCTACGACAGTGGATGCTCAACTGGGGCTGTCAACTGGAG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CCCCCATAGGTAACATCTCCCAGCATGGCAGCTCTGTTCCAAGAGGGAGTGCCGCATGAGAATCAGGAAGCAGC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TGCAAGGTTCCTCATGGTTTTGCCTTACAAGACACCCAGAGTTGTTTCAGCCTCATTCTGTTTGTCAACAGGTC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 ACTGTTTCAAGGAGGAGGGGAACTAGACTCCAGCTCTTGATGAAAGCAGTGATAAGGAATTTGCAGTTCTAGTT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GATCTACTGCAGCTTTCATGGTGTTTTTTCCATATACTGATTATATAATAGTATTTGTCACCTTTTGCCAAGCG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CCACGTATTACAATTAAGTGTCTCTTTATCTCACAGGCTAGATTTTCAACTTCTGGTGAGAGATTGCATTTTTT 592
Query 1 --------------------ATGGAGTCTTGCTCTGTCACCCAGGCTGGAGTGCAATGGCGCGATCTCCACTCA 54
|..||||.|||||.|||||||||||||.||||||| ||||||||..||||
Sbjct 593 TTTTTTTTTTTTTTTTTGAGACAGAGTTTTGCTGTGTCACCCAGGCTAGAGTGCA-----GCGATCTCGGCTCA 661
Query 55 CTGCAACCTCTGCGTACCAGGTTCAAGCGATTCTCCTGTCTCAGCCTCCTGAGTAGCTGGGATTACAGGTGCCC 128
||||||||||.|| |.||.|||||||||||||||.|||.||||||||||.|.|||.|||||||||||||||||.
Sbjct 662 CTGCAACCTCCGC-TCCCGGGTTCAAGCGATTCTTCTGCCTCAGCCTCCCGGGTAACTGGGATTACAGGTGCCT 734
Query 129 ACCACCACAG-CTGGCTAATTTTTGTATTTTTAGTAGAGACTGGGTTTTACCATATTGGCCAGACTGGTCTCGA 201
.|||| | |.||||||||||.|||||||||||||||||.||||||.|||||.||||||||.||||||||||
Sbjct 735 GCCAC----GCCCGGCTAATTTTCGTATTTTTAGTAGAGACAGGGTTTCACCATCTTGGCCAGGCTGGTCTCGA 804
Query 202 ACTCCTGACCTCAGGTGGTCCGCCTGCCTTGGCTTCCCAAAGTGCTGGGATTATAGGAGTGAGCCACTGCGCCT 275
||||||||||||| ||.|||.||..|||||||.|||||||||||||||||||.|||.|||||||||||||||.
Sbjct 805 ACTCCTGACCTCA--TGATCCACCCACCTTGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACTGCGCCC 876
Query 276 GGCC-----ATT-------------------------------------------------------------- 282
|||| |||
Sbjct 877 GGCCGAGAGATTGCATTTTATTTAACCCAATTCTTTCAGTGACATAGCTATAATAACAATAAAGATGTATTAAG 950
Query 283 -------------------------------------------------------------------------- 282
Sbjct 951 TTCCTCTACCATGTGTTTGATCCCATCTAATTGAACACATGATCTTATCTCATCCCTACCCTGATAGAATAGAC 1024
Query 283 -------------------------------------------------------------------------- 282
Sbjct 1025 GTCTCATTTTCCAGATTGGGAACTGAGGCACAGAAAGATTCAGCTTTGCCCAAAAACCACATAATGGACAAGTG 1098
Query 283 -------------------------------------------------------------------------- 282
Sbjct 1099 GCAGAGCCAGGATTTGAACCACTTAAGAGCCTGTGTTTTTATTCTCTCTCTTCTAGTGCCATCTCACAGTCTTG 1172
Query 283 -------------------------------------------------------------------------- 282
Sbjct 1173 GCACCATCTTAGTAGCTTCAGGCTGCTATAAAAAGTTACCATAGGCTGGATGGCTTAAGCAACAGACATTTATT 1246
Query 283 -------------------------------------------------------------------------- 282
Sbjct 1247 TCTCATGCTTATGGAGGCTGGGAAGTTCAGGATCCAGGTGGAGGCTGACCCCATGTCTTTCTGGGAGGTCCAGC 1320
Query 283 -------------------------------------------------------------------------- 282
Sbjct 1321 TGCTCCTGGACCAGATAGTGCCAACACAATACTTCTCATTGTGTTATGATTGCCTACAGCAGGTGAAGGCCTGC 1394
Query 283 -------------------------------------------------------------------------- 282
Sbjct 1395 TTCCTGTTTTCCAGATGGCCGTCTTCTCATTGTATCTTAACATGGTGGAAGGAGAATGAGAAAGCTCGCTTGTG 1468
Query 283 -------------------------------------------------------------------------- 282
Sbjct 1469 TCTCTTTTTATAAGGGCACTAATCCAGACGCGGAGGGCTCACCTTTACAACAGCTAAACCTGATCACCCCCCAG 1542
Query 283 -------------------------------------------------------------------------- 282
Sbjct 1543 AGGCCCCATCTCCAAATACCATCACATTGGGGATTGTGCTTTGACATATGAATGTGGGAGGACACGAGCATTCA 1616
Query 283 -------------------------------------------------------------------------- 282
Sbjct 1617 GTCCATAACAGGCACCAAGGCACCAAGTCAGTCTGCACAAGTGTGTCGCTGGGCAGAAGAACAAAAGAGAAGGA 1690
Query 283 -------------------------------------------------------------------------- 282
Sbjct 1691 AGAAGAAAGAACACAGTACAGAAAGTGAGTGGCGGTACCACAAAGAGTCATCAGCAAGTGCTGATGGTGGCTCC 1764
Query 283 -------------------------------------------------------------------------- 282
Sbjct 1765 GGCCAGCACATTCCAAGCATCCTTGGGTAGCCTGATAAATGGAGTGCAGAATGTTCGGTAGCTCTGCAAGGAGT 1838
Query 283 -------------------------------------------------------------------------- 282
Sbjct 1839 GGGAGTATTTATTGGGTCTGAGTGCTTGATGCGAAACTTTCCTCCAAAGTTCCAATTTTCTATCCGCCAAGATA 1912
Query 283 -------------------------------------------------------------------------- 282
Sbjct 1913 AGTGATGGAGGTTTATGGTTCATGTTGTAGCACATCCACCCAGGCCAAGGACCTACAACTCTGAATTTCTGGCC 1986
Query 283 -------------------------------------------------------------------------- 282
Sbjct 1987 TGCCTCCTTCCAGCTAGAAGTGAATCTAGATTTACATGCCATCAGGAACAAGCATCGTCTTCCTGTTCTGTGAG 2060
Query 283 -------------------------------------------------------------------------- 282
Sbjct 2061 TTCCTAGTTGTAGTAGGTACTGCTTTCATCCTGAGAATATCAATCTACATGCACAAGGTCCCTCTCTGTGGAGG 2134
Query 283 -------------------------------------------------------------------------- 282
Sbjct 2135 AGTAGGTACTTAAACCCAAGATAAGTGGAAACTTTATATCCAAGGAGACAGAAAATAAAATTTCAGTATGTTTT 2208
Query 283 -------------------------------------------------------------------------- 282
Sbjct 2209 ATATTAAACAACTTATTATACTTCTATCCTTTTATGAACATAAGGTCATCAGTAGGCCAAAAGTCTGAAAACAG 2282
Query 283 -------------------------------------------------------------------------- 282
Sbjct 2283 TCTCAGTTCCTCAATGTGAATGCAAACCATTAGTGCAAAAAAAAAAAAAAAATAGATAAAATTAAAAAATGAAA 2356
Query 283 -------------------------------------------------------------------------- 282
Sbjct 2357 GCACAGATACTTTCTAGCCTTGCTGTCTTATAGCCCCATATTCATAGGACTGACCATTCCCCATCTATACCCAC 2430
Query 283 -------------------------------------------------------------------------- 282
Sbjct 2431 ACCTTTCCCAAAGGACACTATCTGTGAATGGTGGCCACGCGTTTGGATGTTACAGAGCAAGCACGTTCTTCATT 2504
Query 283 -------------------------------------------------------------------------- 282
Sbjct 2505 ACTTCACAGACACAATTATGCAGCCCACGTGCATAGTGGAAGTCAGGAAAGCGTCTCCTGGTTGCCTGGTCAGC 2578
Query 283 -------------------------------------------------------------------------- 282
Sbjct 2579 TGACATTCTCGATTCTTTATAGTCAATTGAGCCAGTCCTTAGCTCCTAGAAGAGTAAAACGATACATCCATTTA 2652
Query 283 -------------------------------------------------------------------------- 282
Sbjct 2653 TTAAAAGTACTACTTTAAGACATTAGAAAGTCTGAAATGTTGGAACTCTGCCAAGCAATAGAGAAATCCTGTGA 2726
Query 283 -------------------------------------------------------------------------- 282
Sbjct 2727 TGGTTAATTTTAGGTGTCAACTTGACTGGATCAGGGGATACACAGATAGCTGGTAAAGCATTATTTCTGGGTGT 2800
Query 283 -------------------------------------------------------------------------- 282
Sbjct 2801 GTCTGTGAGCGTGTTTCTGGAGGAGATTGGCATTTGAAGCAGTGGACTGAGTGAGGAAGATCTGCCCTCACACA 2874
Query 283 -------------------------------------------------------------------------- 282
Sbjct 2875 GTGTGGGTGGCACCATCTAATTGGCTGATGGCCCAGATAGAACAAAAAGGCAGAGGAGAGACAATTTTTTTCTC 2948
Query 283 -------------------------------------------------------------------------- 282
Sbjct 2949 TCTCTTCTGGAGCTGGGGCACCCTTCTTCTCCTGCTTTTGGAAGCAGAATTCCCAAGTTCTTCAGCTTTTGGAC 3022
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3023 TCCAGGATCTGAACCGTTGCTTCCCTGGGTTCTCAGACCTGCTGTCTTGGACTGAGAGTAACACCATCGGCTTC 3096
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3097 CCTAATTCTGAGGCCTTCAGCTGGGACTGAGCCACACTACCAGCTGCCCTGGGTCTCCAGCTTGCAAATGCCTG 3170
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3171 GCATGGGACTTCTCAGTTTCCAAATTGTGTGAGCTGATTCCCCTAATCAATCCCCTCTCATCTCTGTCTATCCA 3244
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3245 TCCATCCATCTATGTTTTGTCTCTCTGGAAAACCCTGTCTAATATAAATCCATTCTGAAAATACCAGGTACAGT 3318
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3319 CATGTACTACGTAATAATGTTTCGGTCAACAACGAACCACATATATGATGATGGTCCCGTAAGATTACCCTATT 3392
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3393 TTTACTATACCTTTTTATTTAATATTTAGATATGTTTAGGTACACAAATACTTCCCATTGTGTTATGATTGCCT 3466
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3467 AAAGTTTTCAGTTCAATCACGTGCTATACAGGTTTGGAGCCTAGGAGCAATAGGCCACACCATATAGCATAGGT 3540
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3541 GTGTAGTAGGCTATACCATGTAGGTTGGGTAAGTACACTTTGATGCTCAGAAAATGGTGAAATCACCTAAGGAT 3614
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3615 GCATTTCTCAGAATGTATCCTTGTTAAGTGACACATGAGTGTGCTTATGTGTGTAAGGTCAATAAAAAATGTCA 3688
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3689 CAGGGGCTTTATCAAAGGCAGCATTATTTTATATGGACTATGGGTCCTATTGAATATTTTTGTCCTCTTCCTTG 3762
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3763 CCCACCACCCACCCCCATAAACATTACCCACATTGCAGCCAGGGCAAACATTTAGAAATTGAAATCTGATTTAT 3836
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3837 GATCCCTTGTTAAGACATCCCAATAAAAGGCTTTTCAGGCTGGGATTGGTGGCTCATGCCTGTAATCCCAGCAC 3910
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3911 TTTGGGAGAATGAAGCAGGTGAATTGCTTGAGCCCAGAAGTTTGAGACCAGCCTGAGCAACAAATTGAGACCCC 3984
Query 283 ------------------- 282
Sbjct 3985 CATCGCTACCAAAAAAAAA 4003
