Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_13781
- Subject:
- XR_001743579.2
- Aligned Length:
- 5386
- Identities:
- 243
- Gaps:
- 5109
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CCCGGCAGGAAAGGGCGGTCCTGCGCTGTGGCCCACGCTCGCTCCCGCTGTCGGACTCTGGGCCTGGACCGCGC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GTGGCCGGCGCCAAAAGCGAGAGGCATGAGCGCGCGCCCGGGCCAGTGAACTGCTCGGGGATGGACTGCGGCTC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GGTCGGCGGCCAGAGGACCCAGCGCCTGCCCGGCCGCCAGCGGCTTCTCTTCTTGCCCGTGGGCCTCAGCGGAA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GACCGGGCGGCAGCGAAACCTCAGCACGCCGCTGCCTCTCTGCGCTCTCCGACGGTCTGGGGGCGCTGCGCCCT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CGCGCCCCGGCGGCCCGCGGCGGCGTGTCACGTGCCTCACCGCTGCTCCTCCTCCTGCTAGTGCCCTCCCCGCG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CTTGGCCGCCGCAGCCCCGCGCCGGCAGCTCGGGGACTGGGAGCGCTCGCGCCTCGGGTATGCCGCACCCCCGG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CCGGGCGCAGCAGCGCGTGGAGGTGCTCACCGGGCGTCGCCGCTGCCGCCGGCGCCCTTCCCCAGTACCACGGC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CCGGCGCCTGCACTCGTTTCCTGCAGGAGAGAGCTAAGCTTGTCTGCTGGATCCCTGCAGCTGGAGCGCAAAAG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GAGAGATTTCACCTCTTCTGGGAGCAGGAAACTCTACTTCGACACTCATGCCTTAGTGTGCTTACTGGAAGACA 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 ATGGGTTTGCTACTCAACAAGCAGAAATCATTGTGTCTGCATTGGTCAAGATCCTGGAGGCCAACATGGACATC 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 GTCTACAAAGATATGGTCACCAAGATGCAGCAGGAAATCACTTTTCAGCAAGTAATGTCTCAGATTGCGAATGT 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 GAAAAAGGATATGATTATTTTGGAGAAGAGTGAATTTTCAGCCCTCAGAGCAGAAAATGAGAAAATAAAACTCG 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 AACTACATCAGTTAAAACAACAAGTAATGGATGAAGTGATCAAAGTCCGAACAGATACCAAATTAGACTTCAAC 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 CTAGAAAAGAGCAGAGTAAAAGAATTGGAGGTACTGAGACCAGAATATTTAAGGCACCAGAGAAGGAGAAGAGA 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 GAGGAGTAGATCAGAATCTGACCCATGTTACGTGTTTATTTCAGTATTCATTGAACGAAAAGAAGCTGCTGGAA 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 TTGAGAACAGAAATAGTGGCATTGCATGCCCAGCAAGATCGGGCCCTTACCCAGACAGACAGGAAGATCGAAAC 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 TGAGGTTGCTGGCCTCAAAACCATGCTTGAGTCACACAAGCTTGATAATATTAAATATTTAGCAGGGTCTATAT 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 TTACGTGCCTAACAGTAGCTCTGGGATTTTATCGCCTGTGGATCTAATAAAGTGTCTATTTAAAGTGATTTCTA 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 CTGTTTTGCCTTAAGAATACCAGATTGTTGGCTGGGTGCGGTGGCTCACACCTGTAATTCCAGCACTTTGGGAG 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 GCTGAGGCAGGTGGATTACCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACACGGTGAAACCCCGTCTCTAC 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 TAAAAAATTAAAACATTAGGCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTAAGGTGTGA 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 ACCTGGGAGGCGGAGCTTGTAGTGAGCCGAGATCACGTCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCC 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 GTCTCAAAAAAAAAAAAAAAACCGGAATACCAGATTGTTGTCCTTTTGTTTTCTTGTTACACATTTGAGCCCAG 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 ATTTTGACTTAATGTGTATTATTTATTTTTATGAAAATTGTGGACACATAACCAAGATAAAGAAGTCAGGTATT 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 CCATAGCCATTCCTTATCTCCTTTCTGCTTAGTTGACTTTCTAGCTGAGTGGTGCACAGTGCATGGAAGATTCC 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 ACTTAGCCGGACCAGGAAGCTTGGTCTCATCTGTGGTGCACACCAACAGCAAACATTGATGTAATTCTCTACAA 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 CTTAATCTTTGGCACATAGAGGATTTGGGGGTCTCCATGTTCAGGGCACAATGGCTTTAATAAGTGCTGGAAAA 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 TCACTGAAGCTAAACCAAGAGCACCAGATCCTCTTTACCTAAATAACCAGTCTTTAACATGAGCTAGTCCCTGT 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 ACCATAGTATTGTTTCAGCTGTAGTTGGTTGTCATGTTAATAAGACAGCTGCACGTCTACCTTCTTTTCTTTTG 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 ATTTCCATTGTCTTGGTAAGTTATTGTTAGGGTTATTTTTAATGTGCCTTCCAGCCAGAAAAATCAGCTGTCTA 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 AAGAAGCATTGCAATTGTAATGGGGACTCTTACCTCTTAGAATGCAAGATTTTCCCTCCTCCCTCCCTCTTCTC 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 CATCTCTTTCCCTCATGATTTGAGAACTGTAATAATCCTCCACTGGTGGCATTACCTACCTAGAAAACCTGCTG 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 ATTCTTAGCATGGAACTTTGCTTCAGTTTGCAGGACAAAGTCTGCTTCCTTCCGGTCTTCATTTACTTTTTATA 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 CAAGGGATGCAGTCAGCTCTCCATGTATAAGATACCTAGATGATGGATACATATTTCATAAATGAAATTTATGT 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 CATTAATGAATATCCCCTTGCCCACAACCAGCTCAGGCTTTCAAAATTCGAGAATGGTCATGCCACACAGCATT 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 CTAATCTAGATGGATTAATTCTGTTGTTCAAAACATTCTCATACCTGCCTTTATATTGAAAACAAATTCTAGAT 2664
Query 1 -----------------------------------------------------ATGGAGTCTTGCTCTGTCACC 21
|.|||||||.||.|||| |.
Sbjct 2665 ACAACTGGGGTTATTCTGGAAAAGCACATTCTCACCTTTTTTTTTTTTTTGAGACGGAGTCTCGCACTGT--CG 2736
Query 22 CA-GGCTGGAGTGCAATGGCGCGATCTCCACTCACTGCAACCTCTGCGTACCAGGTTCAAGCGATTCTCCTGTC 94
|| ||||||||||||.||.||.||||||..|||||||||||||||||.|.|..|||||||||||||||||||.|
Sbjct 2737 CAGGGCTGGAGTGCATTGTCGTGATCTCTGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCGATTCTCCTGCC 2810
Query 95 TCAGCCTCCTGAGTAGCTGGGATTACAGGTGCCCACCACCACAGCTGGCTAATTTTTGTATTTTTAGTAGAGAC 168
||||.|||||||||||||||||||||||||||||||||||||..|..||||||||||||||||||||||||||
Sbjct 2811 TCAGTCTCCTGAGTAGCTGGGATTACAGGTGCCCACCACCACGCCCAGCTAATTTTTGTATTTTTAGTAGAGA- 2883
Query 169 TG-GGTTTTACCATATTGGCCAGACTGGTCTCGAACTCCTGACCTCAGGTGGTCCGCCTGCCTTGGCTTCCCAA 241
|| |||||.|||||.||||||||.||||||||.||||||||||||| |||.|.|.||.|||||||..||||||
Sbjct 2884 TGAGGTTTCACCATGTTGGCCAGGCTGGTCTCTAACTCCTGACCTC--GTGATTCACCCGCCTTGGTCTCCCAA 2955
Query 242 AGTGCTGGGATTATAGGAGTGAGCCACTGCGCCTGG-CCATT-------------------------------- 282
|||..||||||||.|||.|||||||.|||||||||| |||||
Sbjct 2956 AGTAGTGGGATTACAGGCGTGAGCCGCTGCGCCTGGCCCATTCTCATCTTATTCAAATTACTGGCACATGGGCA 3029
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3030 AGAGAGACAATGACATGGATAGAAGCTTTTCTGCCTTTCTCTGCACACACATACAGTGAAGGAACCACAGGCAG 3103
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3104 ATTTTTTGATCAGTTTGGTGAATACATTGCTCGTTGTCACTGTTCCAACCACATTGGTAAAAAAAATAGTTACC 3177
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3178 TTTTGTCCTTTGGATGTCATGTCTAAACTTTGGAAAATATAAGTCATTGCCCTTTTAGAGAATGTTTGTGTAGT 3251
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3252 CCAAAGATTGTGAGCTCCATATAGTATGAAAATCAAGTACTTTTGCATGAGCAATAGCAGTTTCAAAGTGAAAT 3325
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3326 ATTATAATTTAATCTTTTTCAAGTAGATCAAAAATTCTTAACTGATTAATAAAATATTTTATCAATATATCATC 3399
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3400 CCCCTTTCAGAGAGAAGTCCCCAGAAGAGACAGCACACTTAGCAATTGCCCTCATTATTAAAGGCCTAGGTGAG 3473
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3474 TGGCATAAAGGGCCATATGCGATTATGTTTCAAGGTAAACATTACCTAACCTTGTGTGGGTTAAAAACAGTGAA 3547
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3548 GTGTCCTTGTATCCTGATAAAATTTTTTTTTAAATAACATGGTGGGTTGACATTTTTGCATCTGCTATAAGTTT 3621
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3622 TCTCACATGTCGTTCTTCCTGGTGAGAGCGGGCTGCATCATTCTGGCACTTAATTTGGGTGTTCGATTTTGCTA 3695
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3696 TAGAGTTCTTTGCAGTACAGCATAGCCTCTTCTTGGCCTTGGGAACAGTGAACTCTTCTTTTGATGGTGTGGAT 3769
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3770 TGCATGCATATCTGGAGAGAGGAGGGCTCAGGACTGTGTTCACTTTATTTGGTCAGATGTATTTTATTTGAAAA 3843
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3844 CCATTTGAGCCCAAAATACAAGTGTACCCTTCCCACTTCTGGCTCAAGCACCCGTGAGCCGACTAGACGTAATA 3917
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3918 TTAAAACTTACTGATGCTGGGTGCGGTGGCTCATGCCTATAATCCCAGCACTTTGGGAGGCCAAGGCAGGCAGA 3991
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3992 TCACCTGAGGTCAGGAGTTGGAGACCAGACTGGCCAACATGACGAAATGCTCTCGCTACTAAAAATAGAAAAAT 4065
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4066 TAGCCAGGCGTGGTGGCACACCCCTGTAATCCTAGCTACTCGGGAGGCTGAGACAGGAAAATTGCATGAACCTG 4139
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4140 GGAGGCAGAGGTTGCAGTGAGCAGAGATTACACCACTGCAACGAGACTCGGGCCCAGACGAGATCTGCCTGGGC 4213
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4214 GACACAGTGAGACTCTGTCTCAAAATAAATAAATAAGTAAATAGAACCTCCTGAGCTACCCTGGCTTATAAGGA 4287
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4288 TTCAGATTACTTTAGGAAATTAGGCATTAGCACTAGGAGGGGGGAAGATGGCTGGCAAAACTTCTAGCTAGCAA 4361
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4362 CCTATGTCTAGCACATGGGTAACTAACCATAGCGAGATCCTGAACACATATCCTCTAGGTGCAGGTGGAGGGAA 4435
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4436 CGATGTCCAATACCTGAAGCAGAATCTCACATGGACGGAACGTCTGTATTTCCCTCTCCTGCACGAATCACTCA 4509
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4510 TCATTCTTGGAGGGCTTCTCTGCATTCCTCCTTTTCTTCTCTCCCCTCCCCTGCCTTTTGTCTTTTCTAAAGAG 4583
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4584 TCTGAACTCCGATTTCCATGCTCTCCTGCTACATTAATAAGCAAAACCTGCTTGTGTGTACGGTTCTTTACTGG 4657
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4658 AAACATGACTTTTTGTTTCTGTATTGGTTTTACTGTCATCCAGTTTTCTAGTTTAATATCTAGCAAAACTAAAT 4731
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4732 CTGAATGTACTCGCTTTTTCCGTTAAGTATGCCAAGCACCTCGGTTGAAAGGCTTGACTCAAACCAGAAGTCTT 4805
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4806 GCTGGAATTCGTCTCTGAACACTTGAAAAACAGAAACCCTGAGCCGCAACAAACATGCCTCTGTGTGTCGGGAT 4879
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4880 TGCCTTTGTCTCTGCTTCCATGTGGCTTTTCCTTTTGTAGCTATGCTTAGTGACATAATCTTCCCTCTTCTAGC 4953
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4954 CTTCTCCTTTCAAGCCTGTCTGTTAATTAACCATGTCAGTATTGGCAAGCATTTATCTTCCCCCACCCTAACAT 5027
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5028 GCAATCTTCTAAGAATTTTGCAAAATTCTAAACAAATATAGAGATGGTATATAGAATTCATATCTAGAAAACTT 5101
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5102 TGATTTTAATGTGAGCTTATCAAATTTGTTCTGGCTTTTTTGGCACTAAGGCAAAAACATGTTAACCAGAAATA 5175
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5176 ATTTATTCTTCATGTATGTAAAATATTTGAGAATGTTTAGCCTTTTATTAGAATTTTATTTGGAAAATATTTAT 5249
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5250 CTTTCTACACATTTTACACTTATGTTCCTTTGCTTATAACCCAATTTCTTAACTTTTTTGTTACTTAAGCAAAT 5323
Query 283 ---------------------------------------------------------- 282
Sbjct 5324 ATCAATTATGTTTTATTATCTAATAAAGTGTAAGATTCTTACTATCTAAAATATTTAA 5381
