Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_13781
Subject:
XR_001743579.2
Aligned Length:
5386
Identities:
243
Gaps:
5109

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  CCCGGCAGGAAAGGGCGGTCCTGCGCTGTGGCCCACGCTCGCTCCCGCTGTCGGACTCTGGGCCTGGACCGCGC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GTGGCCGGCGCCAAAAGCGAGAGGCATGAGCGCGCGCCCGGGCCAGTGAACTGCTCGGGGATGGACTGCGGCTC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GGTCGGCGGCCAGAGGACCCAGCGCCTGCCCGGCCGCCAGCGGCTTCTCTTCTTGCCCGTGGGCCTCAGCGGAA  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GACCGGGCGGCAGCGAAACCTCAGCACGCCGCTGCCTCTCTGCGCTCTCCGACGGTCTGGGGGCGCTGCGCCCT  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CGCGCCCCGGCGGCCCGCGGCGGCGTGTCACGTGCCTCACCGCTGCTCCTCCTCCTGCTAGTGCCCTCCCCGCG  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  CTTGGCCGCCGCAGCCCCGCGCCGGCAGCTCGGGGACTGGGAGCGCTCGCGCCTCGGGTATGCCGCACCCCCGG  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  CCGGGCGCAGCAGCGCGTGGAGGTGCTCACCGGGCGTCGCCGCTGCCGCCGGCGCCCTTCCCCAGTACCACGGC  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  CCGGCGCCTGCACTCGTTTCCTGCAGGAGAGAGCTAAGCTTGTCTGCTGGATCCCTGCAGCTGGAGCGCAAAAG  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  GAGAGATTTCACCTCTTCTGGGAGCAGGAAACTCTACTTCGACACTCATGCCTTAGTGTGCTTACTGGAAGACA  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  ATGGGTTTGCTACTCAACAAGCAGAAATCATTGTGTCTGCATTGGTCAAGATCCTGGAGGCCAACATGGACATC  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  GTCTACAAAGATATGGTCACCAAGATGCAGCAGGAAATCACTTTTCAGCAAGTAATGTCTCAGATTGCGAATGT  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  GAAAAAGGATATGATTATTTTGGAGAAGAGTGAATTTTCAGCCCTCAGAGCAGAAAATGAGAAAATAAAACTCG  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  AACTACATCAGTTAAAACAACAAGTAATGGATGAAGTGATCAAAGTCCGAACAGATACCAAATTAGACTTCAAC  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  CTAGAAAAGAGCAGAGTAAAAGAATTGGAGGTACTGAGACCAGAATATTTAAGGCACCAGAGAAGGAGAAGAGA  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  GAGGAGTAGATCAGAATCTGACCCATGTTACGTGTTTATTTCAGTATTCATTGAACGAAAAGAAGCTGCTGGAA  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  TTGAGAACAGAAATAGTGGCATTGCATGCCCAGCAAGATCGGGCCCTTACCCAGACAGACAGGAAGATCGAAAC  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  TGAGGTTGCTGGCCTCAAAACCATGCTTGAGTCACACAAGCTTGATAATATTAAATATTTAGCAGGGTCTATAT  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  TTACGTGCCTAACAGTAGCTCTGGGATTTTATCGCCTGTGGATCTAATAAAGTGTCTATTTAAAGTGATTTCTA  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  CTGTTTTGCCTTAAGAATACCAGATTGTTGGCTGGGTGCGGTGGCTCACACCTGTAATTCCAGCACTTTGGGAG  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  GCTGAGGCAGGTGGATTACCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACACGGTGAAACCCCGTCTCTAC  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  TAAAAAATTAAAACATTAGGCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTAAGGTGTGA  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  ACCTGGGAGGCGGAGCTTGTAGTGAGCCGAGATCACGTCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCC  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  GTCTCAAAAAAAAAAAAAAAACCGGAATACCAGATTGTTGTCCTTTTGTTTTCTTGTTACACATTTGAGCCCAG  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  ATTTTGACTTAATGTGTATTATTTATTTTTATGAAAATTGTGGACACATAACCAAGATAAAGAAGTCAGGTATT  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  CCATAGCCATTCCTTATCTCCTTTCTGCTTAGTTGACTTTCTAGCTGAGTGGTGCACAGTGCATGGAAGATTCC  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  ACTTAGCCGGACCAGGAAGCTTGGTCTCATCTGTGGTGCACACCAACAGCAAACATTGATGTAATTCTCTACAA  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  CTTAATCTTTGGCACATAGAGGATTTGGGGGTCTCCATGTTCAGGGCACAATGGCTTTAATAAGTGCTGGAAAA  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  TCACTGAAGCTAAACCAAGAGCACCAGATCCTCTTTACCTAAATAACCAGTCTTTAACATGAGCTAGTCCCTGT  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  ACCATAGTATTGTTTCAGCTGTAGTTGGTTGTCATGTTAATAAGACAGCTGCACGTCTACCTTCTTTTCTTTTG  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  ATTTCCATTGTCTTGGTAAGTTATTGTTAGGGTTATTTTTAATGTGCCTTCCAGCCAGAAAAATCAGCTGTCTA  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  AAGAAGCATTGCAATTGTAATGGGGACTCTTACCTCTTAGAATGCAAGATTTTCCCTCCTCCCTCCCTCTTCTC  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  CATCTCTTTCCCTCATGATTTGAGAACTGTAATAATCCTCCACTGGTGGCATTACCTACCTAGAAAACCTGCTG  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  ATTCTTAGCATGGAACTTTGCTTCAGTTTGCAGGACAAAGTCTGCTTCCTTCCGGTCTTCATTTACTTTTTATA  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  CAAGGGATGCAGTCAGCTCTCCATGTATAAGATACCTAGATGATGGATACATATTTCATAAATGAAATTTATGT  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  CATTAATGAATATCCCCTTGCCCACAACCAGCTCAGGCTTTCAAAATTCGAGAATGGTCATGCCACACAGCATT  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  CTAATCTAGATGGATTAATTCTGTTGTTCAAAACATTCTCATACCTGCCTTTATATTGAAAACAAATTCTAGAT  2664

Query    1  -----------------------------------------------------ATGGAGTCTTGCTCTGTCACC  21
                                                                 |.|||||||.||.||||  |.
Sbjct 2665  ACAACTGGGGTTATTCTGGAAAAGCACATTCTCACCTTTTTTTTTTTTTTGAGACGGAGTCTCGCACTGT--CG  2736

Query   22  CA-GGCTGGAGTGCAATGGCGCGATCTCCACTCACTGCAACCTCTGCGTACCAGGTTCAAGCGATTCTCCTGTC  94
            || ||||||||||||.||.||.||||||..|||||||||||||||||.|.|..|||||||||||||||||||.|
Sbjct 2737  CAGGGCTGGAGTGCATTGTCGTGATCTCTGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCGATTCTCCTGCC  2810

Query   95  TCAGCCTCCTGAGTAGCTGGGATTACAGGTGCCCACCACCACAGCTGGCTAATTTTTGTATTTTTAGTAGAGAC  168
            ||||.|||||||||||||||||||||||||||||||||||||..|..|||||||||||||||||||||||||| 
Sbjct 2811  TCAGTCTCCTGAGTAGCTGGGATTACAGGTGCCCACCACCACGCCCAGCTAATTTTTGTATTTTTAGTAGAGA-  2883

Query  169  TG-GGTTTTACCATATTGGCCAGACTGGTCTCGAACTCCTGACCTCAGGTGGTCCGCCTGCCTTGGCTTCCCAA  241
            || |||||.|||||.||||||||.||||||||.|||||||||||||  |||.|.|.||.|||||||..||||||
Sbjct 2884  TGAGGTTTCACCATGTTGGCCAGGCTGGTCTCTAACTCCTGACCTC--GTGATTCACCCGCCTTGGTCTCCCAA  2955

Query  242  AGTGCTGGGATTATAGGAGTGAGCCACTGCGCCTGG-CCATT--------------------------------  282
            |||..||||||||.|||.|||||||.|||||||||| |||||                                
Sbjct 2956  AGTAGTGGGATTACAGGCGTGAGCCGCTGCGCCTGGCCCATTCTCATCTTATTCAAATTACTGGCACATGGGCA  3029

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3030  AGAGAGACAATGACATGGATAGAAGCTTTTCTGCCTTTCTCTGCACACACATACAGTGAAGGAACCACAGGCAG  3103

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3104  ATTTTTTGATCAGTTTGGTGAATACATTGCTCGTTGTCACTGTTCCAACCACATTGGTAAAAAAAATAGTTACC  3177

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3178  TTTTGTCCTTTGGATGTCATGTCTAAACTTTGGAAAATATAAGTCATTGCCCTTTTAGAGAATGTTTGTGTAGT  3251

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3252  CCAAAGATTGTGAGCTCCATATAGTATGAAAATCAAGTACTTTTGCATGAGCAATAGCAGTTTCAAAGTGAAAT  3325

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3326  ATTATAATTTAATCTTTTTCAAGTAGATCAAAAATTCTTAACTGATTAATAAAATATTTTATCAATATATCATC  3399

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3400  CCCCTTTCAGAGAGAAGTCCCCAGAAGAGACAGCACACTTAGCAATTGCCCTCATTATTAAAGGCCTAGGTGAG  3473

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3474  TGGCATAAAGGGCCATATGCGATTATGTTTCAAGGTAAACATTACCTAACCTTGTGTGGGTTAAAAACAGTGAA  3547

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3548  GTGTCCTTGTATCCTGATAAAATTTTTTTTTAAATAACATGGTGGGTTGACATTTTTGCATCTGCTATAAGTTT  3621

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3622  TCTCACATGTCGTTCTTCCTGGTGAGAGCGGGCTGCATCATTCTGGCACTTAATTTGGGTGTTCGATTTTGCTA  3695

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3696  TAGAGTTCTTTGCAGTACAGCATAGCCTCTTCTTGGCCTTGGGAACAGTGAACTCTTCTTTTGATGGTGTGGAT  3769

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3770  TGCATGCATATCTGGAGAGAGGAGGGCTCAGGACTGTGTTCACTTTATTTGGTCAGATGTATTTTATTTGAAAA  3843

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3844  CCATTTGAGCCCAAAATACAAGTGTACCCTTCCCACTTCTGGCTCAAGCACCCGTGAGCCGACTAGACGTAATA  3917

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3918  TTAAAACTTACTGATGCTGGGTGCGGTGGCTCATGCCTATAATCCCAGCACTTTGGGAGGCCAAGGCAGGCAGA  3991

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3992  TCACCTGAGGTCAGGAGTTGGAGACCAGACTGGCCAACATGACGAAATGCTCTCGCTACTAAAAATAGAAAAAT  4065

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4066  TAGCCAGGCGTGGTGGCACACCCCTGTAATCCTAGCTACTCGGGAGGCTGAGACAGGAAAATTGCATGAACCTG  4139

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4140  GGAGGCAGAGGTTGCAGTGAGCAGAGATTACACCACTGCAACGAGACTCGGGCCCAGACGAGATCTGCCTGGGC  4213

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4214  GACACAGTGAGACTCTGTCTCAAAATAAATAAATAAGTAAATAGAACCTCCTGAGCTACCCTGGCTTATAAGGA  4287

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4288  TTCAGATTACTTTAGGAAATTAGGCATTAGCACTAGGAGGGGGGAAGATGGCTGGCAAAACTTCTAGCTAGCAA  4361

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4362  CCTATGTCTAGCACATGGGTAACTAACCATAGCGAGATCCTGAACACATATCCTCTAGGTGCAGGTGGAGGGAA  4435

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4436  CGATGTCCAATACCTGAAGCAGAATCTCACATGGACGGAACGTCTGTATTTCCCTCTCCTGCACGAATCACTCA  4509

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4510  TCATTCTTGGAGGGCTTCTCTGCATTCCTCCTTTTCTTCTCTCCCCTCCCCTGCCTTTTGTCTTTTCTAAAGAG  4583

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4584  TCTGAACTCCGATTTCCATGCTCTCCTGCTACATTAATAAGCAAAACCTGCTTGTGTGTACGGTTCTTTACTGG  4657

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4658  AAACATGACTTTTTGTTTCTGTATTGGTTTTACTGTCATCCAGTTTTCTAGTTTAATATCTAGCAAAACTAAAT  4731

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4732  CTGAATGTACTCGCTTTTTCCGTTAAGTATGCCAAGCACCTCGGTTGAAAGGCTTGACTCAAACCAGAAGTCTT  4805

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4806  GCTGGAATTCGTCTCTGAACACTTGAAAAACAGAAACCCTGAGCCGCAACAAACATGCCTCTGTGTGTCGGGAT  4879

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4880  TGCCTTTGTCTCTGCTTCCATGTGGCTTTTCCTTTTGTAGCTATGCTTAGTGACATAATCTTCCCTCTTCTAGC  4953

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4954  CTTCTCCTTTCAAGCCTGTCTGTTAATTAACCATGTCAGTATTGGCAAGCATTTATCTTCCCCCACCCTAACAT  5027

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 5028  GCAATCTTCTAAGAATTTTGCAAAATTCTAAACAAATATAGAGATGGTATATAGAATTCATATCTAGAAAACTT  5101

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 5102  TGATTTTAATGTGAGCTTATCAAATTTGTTCTGGCTTTTTTGGCACTAAGGCAAAAACATGTTAACCAGAAATA  5175

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 5176  ATTTATTCTTCATGTATGTAAAATATTTGAGAATGTTTAGCCTTTTATTAGAATTTTATTTGGAAAATATTTAT  5249

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 5250  CTTTCTACACATTTTACACTTATGTTCCTTTGCTTATAACCCAATTTCTTAACTTTTTTGTTACTTAAGCAAAT  5323

Query  283  ----------------------------------------------------------  282
                                                                      
Sbjct 5324  ATCAATTATGTTTTATTATCTAATAAAGTGTAAGATTCTTACTATCTAAAATATTTAA  5381

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