Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_13781
- Subject:
- XR_001744735.1
- Aligned Length:
- 2174
- Identities:
- 244
- Gaps:
- 1894
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TTTTTTTTCCGAACGCCCGCAGCAGGGTCAGAAGGGAGGTGGTCGCCCTCCGTCGTGGTCTGGCGTGTATTCCG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AGCCTTGGTGTCTGGCGGTTTCCGAGCGTTGGTGTCTGGCGGTTTCCGAGCGTTGGTGTCTTGGCGGTTTCCGA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CCGTTGGTGTCTGGCGGTTTCCGACCGTTGGTGTCTGGCACGCGCCACCCTCTCTTGCTTTGGTTGCGCCATGC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CGATGTACCAGACAAGAAGACAAGAAAATGATTTGAGGACAGCTTCAATCGCGGTGTGAAGAAGAAAGCAGCAA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 AACGACCACTGAAAACAACGCCGGTGGCAAAATATCCAAAGAAAGGGTCCCAAGCGGTACATCGTCATAGCCGG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 AAACAGTCAGAGCCACCAGCCAATGATCTTTTCAATGCTGCGAAAGCTGCCAAAAGTGACATGCAGCACCGAGA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 AGTCCGCGTGAAGTGCGTGAAGGCTCTGAAAGGGCTGTACGGTAACCGGGACCTGACCGCACGCCTGGAGCTCT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 TCACTGGCCGCTTCAAGGACTGGATGGTTTCCATGATCATGGACAGAGAGTACAGTGTGGCAGTGGAGGCCGTC 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 AGATTACTGATACTTATCCTTAAACTTTTCTACCCTGAGTGCGAGATAAGAACGATGGGTGGAAGAGAGCAACG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 CCAGAGCCCAGGTGCCCAGAGGACTTTCTTCCAGCTTCTGCTGTCCTTCTTTGTGGAGAGCAAGCTCCACGACC 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 ACGCTGCTTACTTAGTAGACAACCTGTGGGACTGTGCAGGGACTCAGCTGAAGGACTGGGAGGGTCTGACAAGC 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 CTGCTGCTGGAGAAGGACCAGAGCACGTGCCACATGGAGCCAGGGCCAGGGACCTTCCACCTCCTAGGGTGAAA 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 CCAGGAGAGATTGCTTGCTTCACTTGTACAAGGCAGGAACGGTGGCATGGGGTGGGGGAAACTTGGAGTTGGAA 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 GGTGGCTAATCTTTGATTCTATGTTTTTGATCCTCCTGGCACTCCAGACCTGGGTGATGTGCAGGAGAGCACAC 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 TGATAGAAATCCTTGTGTCCAGTGCCCAGCAACTCCTGCCTCAGCCTCCCGAGCAGCTGGGACTACAGGCGCCC 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 GCCACCACGCCTGGCTAACTTTTTTGTATTTTTAGTAGAGACGGGTTTTCACCGTGTTAGCCAGGATGGTCTTG 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 ATCTCTTGACCTTGTGATCCACCTGCCTCATCATCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGCGCCCA 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 GCATGTTAGACAATTTTTAATTCATCCTCTCTGTGCTGTTGTTTTCTCAGCTGTGAAAGGAATATTCTGGTGGG 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 GACAAGGTTACAGAGTTGCTGAGAGGGTCTCATGACATGAAGGTACTGGCCTTGGCACAGTGCCTGGGGGGGCG 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 GGGACTCCGCACATGCCTGTGATGTCACAGTTACTGTCAGTTCACAGCGAACCTTCCCTCCTTTTCCTGTTGAC 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 TTTCCCACACTCCTGTAACCCTCCCTCCCTCCCTTCTTCCTCTCTCTCTCTCTCACTCACGCACACGCACACAC 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 ACACACACACACACACACACACACACTCCATTCTCTGTCTCCATGACTCTGGAGTAAACTAACGTCTCGAGTTG 1628
Query 1 -------------------------------------------------ATGGAGTCTTGCTCTGTCACCCAGG 25
|.||.||||.||||||||.||||||
Sbjct 1629 CCATTGGAAGCCCCATTGTCCTCATTTTGTTTTGTTTTGTTTGTTTGAGACGGGGTCTCGCTCTGTCCCCCAGG 1702
Query 26 CTGGAGTGCAATGGCGCGATCTCCACTCACTGCAACCTCTGCGTACCAGGTTCAAGCGATTCTCCTGTCTCAGC 99
||||||||||.|||.||||||||..|.|||||||.||||.||.|.|.||||||||||||||||||||.||||.|
Sbjct 1703 CTGGAGTGCAGTGGTGCGATCTCAGCCCACTGCAGCCTCCGCCTCCTAGGTTCAAGCGATTCTCCTGCCTCACC 1776
Query 100 CTCCTGAGTAGCTGGGATTACAGGTGCCCACCACCACAGCTGGCTAATTTTTGT-ATTTTTAGTAGAGACTGGG 172
||||||||||||||.|||.|.||||||||.||||||||.|.|.||||||||||| .||||||||||||||.|||
Sbjct 1777 CTCCTGAGTAGCTGTGATCATAGGTGCCCGCCACCACACCCGACTAATTTTTGTGTTTTTTAGTAGAGACAGGG 1850
Query 173 TTTTACCATATTGGCCAGACTGGTCTCGAACTCCTGACCTCAGGTGGTCCGCCTGCCTTGGCTTCCCAAAGTGC 246
|||.||.||.||||||||.||||||||.||||||||||||||||||.||||||..|||||||.|||||||||||
Sbjct 1851 TTTCACTATGTTGGCCAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCCGCCCACCTTGGCCTCCCAAAGTGC 1924
Query 247 TGGGATTATAGGAGTGAGCCAC--TGC---GCCTGGCCATT--------------------------------- 282
||||||||.||||||||||||| ||| |||| ||.||
Sbjct 1925 TGGGATTACAGGAGTGAGCCACCATGCCCAGCCT--CCGTTGTCCTCATTTAGACTTTCATGGGTTATAGGCAC 1996
Query 283 -------------------------------------------------------------------------- 282
Sbjct 1997 TTTTGACTTCCTGGGGTCCTTCTTCAGTTAAAAAAAAAAATTAGAAAATTAGGCCGGGCGTGGTGGCACATGCC 2070
Query 283 -------------------------------------------------------------------------- 282
Sbjct 2071 TGTAATCCCAGCACTTTATGAGGCCGAGGTGGGAGGATCACCTGAGGTCGGGAGTTCAAGACCAGCCTGACCAA 2144
Query 283 ---------------------------- 282
Sbjct 2145 TGTGGAGAAACCCCGTCCCTACTAAAAA 2172
