Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_13781
- Subject:
- XR_001747881.1
- Aligned Length:
- 3851
- Identities:
- 244
- Gaps:
- 3575
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TTTAGCCTGTGGTGGGCGCTGCGGGTGTTTGCAGGAGGTTGCAGTACTCGCTGGGCTGAGGTCGTCTCGGGTGA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GGAGGTCGCGCCGGAAGTGGCTCTAGCCGTGGCGCTTCGGCGTAGTAAGGAGCCTGCAACAGAGTTTTGTTGTT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TAGGGGGCGCGGCACCGCACCGCTCCCTTCACCTTGCAGCAGCCATGGCGAAAGGCAGAGTCGCCGAACGATCG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CAGTTGGGCGCTCACCACACGACCCCCGTGGGGGACGGGGCAGCGGGGACGCGGGGTCTCGCGGCGCCTGGCAG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CAGAGACCACCAGAAGGAAAAATCCTGGGTAGAAGCTGGATCAGCAAGAATGTCACTCCTTATATTGGTGTCCA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TTTTCTTATCTGCAGCTTTTGTTATGTTTTTGGTATATAAAAATTTTCCTCAGCTTAGTGAAGAAGAAAGAGTG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 AATATGAAGGTTCCCAGAGATATGGATGATGCCAAGGCTCTAGGAAAAGTTTTATCCAAATACAAGGACACCTT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 TTATGTTCAAGTACTTGTAGCTTATTTTGCTACATATATTTTTTACCAGCTTGCAAACATTTGCTATTCCAGGC 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 TCTATATTTCTCAGTATACTCTCAGGGTTTCTTTATCCCTTTCCACTAGCCTTATTTCTTGTTTGTTTGTGTTC 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TGGACTTGGTGCCTCTTTCTGTTATATGCTTTCCTATTTAGTTGGGAGACCAGTTGTATACAAATACCTAACAG 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 AGAAAGCAGTAAAATGGTCACAGCAGGTTGAACGTCATAGAGAACATCTCATTAACTACATTATATTTTTGAGA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 ATAACACCATTTCTGCCTAATTGGTTTATTAATATCACATCTCCTGTGATAAACGTGCCATTGAAAGTTTTTTT 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 TATTGGTACTTTTCTAGGTGTCGCACCTCCTTCTTTTGTAGCCATTAAGGCAGGAACAACACTGTATCAACTTA 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 CAACAGCAGGAGAAGCTGTTTCCTGGAACTCAATATTTATTCTGATGATCTTGGCTGTTCTTTCTATTCTGCCA 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 GCCATCTTCCAAAAAAAACTAAAGCAGAAATTTGAGTAAAAATAATCATCTGATTTTTAGTTTTGCTGTCATCA 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 CCATCTCAGGATTAACAGGTGCATCCATTTATGTTTTAAAATCACCTCTTCAGTAATTAAACAAGGAATTTGTA 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 AAATAAAATTTCCTATCAGATAGTTAAAGTAATACATTTAAGTGACAAGGGGAGAAGAAAGTAAAAATGGAAAT 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 TGGTATACTGTGAAAAGTGCTATCAATAGTTAAGGTAGACATCTTAGACATCTTATAAATTATTATACCAAGGG 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 TAGCTGTAGATAATAGTAGTGTGGTAGGAAATTGTTGATCCAGCTAATTCATTCAATTTAATTGAATATTTTTT 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 ATCTTTAATAACTAAAATAGATATTTTTAAATTCTAGATTTTTTAAAGTAGTGTTGCAGGTTTTGTTAATGTTA 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 GGCTTTTTTCAGAGCATAAACTGGAAAACTTAAAAAGAGATTTACATTTTCTTCCTCTTTTTTTTTTTTTTTTT 1554
Query 1 --------------ATGGAGTCTTGCTCTGTCACCCAGGCTGGAGTGCAATGGCGCGATCTCCACTCACTGCAA 60
|.|||||||.||||||.|.||||||||||||||||.||||||||||||||||||||||||
Sbjct 1555 TTTTCTGTTTTGAGACGGAGTCTAGCTCTGCCGCCCAGGCTGGAGTGCAGTGGCGCGATCTCCACTCACTGCAA 1628
Query 61 CCTCTGCGTACCAGGTTCAAGCGATTCTCCTGTCTCAGCCTCCTGAGTAGCTGGGATTACAGGTGCCCACCACC 134
.|||..|.|.|..||||||.||.|||||||||||||||||||||||||||||||||.||||||.||||.|||||
Sbjct 1629 GCTCCACCTCCTGGGTTCACGCCATTCTCCTGTCTCAGCCTCCTGAGTAGCTGGGACTACAGGCGCCCGCCACC 1702
Query 135 ACAGCTG----GCTAA--TTTTTGTATTTTTAGTAGAGACTGGGTTTTACCATATTGGCCAGACTGGTCTCGAA 202
| || ||||| ||||||||||||||||||||||.||||||.|||.|.||.|||||..|||||||||.
Sbjct 1703 A----TGCCCAGCTAATTTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCGTGTTAGCCAGGATGGTCTCGAT 1772
Query 203 CTCCTGACCTCAGGTGGTCCGCCTGCCTTGGCTTCCCAAAGTGCTGGGATTATAGGAGTGAGCCACTGCGCCTG 276
||||||||||| |||.||.|||.||||||||.|||||||||||||||||||.|||.|||||||||.|||||||
Sbjct 1773 CTCCTGACCTC--GTGATCTGCCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCTG 1844
Query 277 G-CCATT------------------------------------------------------------------- 282
| |||||
Sbjct 1845 GCCCATTTTCTTCCTCTTTTGAGGTAATGGATTTGTTTGGAGATGGCATGTTAGTAGACGACTGAATATGGAAA 1918
Query 283 -------------------------------------------------------------------------- 282
Sbjct 1919 GGATATCAAGTTATCTATTTTGTTAATTTTATTTTTGTTTTTTATCATCTAGATTTTTATCATGGATTAGTCTG 1992
Query 283 -------------------------------------------------------------------------- 282
Sbjct 1993 AAATTTAAAGTTCTGGCCAGTCGGTTTTCTTTCATCTTGTAGTTTTTACAGTATTTCCACTGTGCATATGCAAA 2066
Query 283 -------------------------------------------------------------------------- 282
Sbjct 2067 ATGGGTATTACATAACTGTATCATATTTGGTATTGATAATTTTTTTTTTTTTTGAGACGGAGTCTTGCTGTTGC 2140
Query 283 -------------------------------------------------------------------------- 282
Sbjct 2141 CCAGGCTGGAGTGGAGTGCGTGGTGTGATCTCGGCTCACTGCAAACTCCGCCTCCTGGGTTCAAGCGATTCTCC 2214
Query 283 -------------------------------------------------------------------------- 282
Sbjct 2215 TGGCCCAGCCTCCTGAGTAGCTGGGATTACAGGTGTGTGCCACCGTGCCCAGCTAATTTTTGTGTTTTTAGTAG 2288
Query 283 -------------------------------------------------------------------------- 282
Sbjct 2289 AGACGGGGTTTCACCATGTTGGCCGGGCTGGTCTTGAACTCCTGACCTCAGGCTATATGCCCACTTCCACCTCC 2362
Query 283 -------------------------------------------------------------------------- 282
Sbjct 2363 CAAAGTGCTGGGATTACAGGCATGAGCCACTGTGCCCAGCCTGGTATTGATAATTTATATTCAGATAATTTGTT 2436
Query 283 -------------------------------------------------------------------------- 282
Sbjct 2437 ATGGCTCTTTAATATCCCACAAGGGGCTCTAAAAAGCAAACATTCAAGAGTATGTAGTTTTTAGACATTAAGTT 2510
Query 283 -------------------------------------------------------------------------- 282
Sbjct 2511 AATTATTTTAAACAGTGACAGCAAAACACAAGTGATTAAATATAGTTTATTTGTTCCAATGACTAAATTTTACC 2584
Query 283 -------------------------------------------------------------------------- 282
Sbjct 2585 TCATTTATTAATCTGGTCATTAAGGAATATATTTAATAATATTATGTAATTATTCTTTTTATGCATGATACACC 2658
Query 283 -------------------------------------------------------------------------- 282
Sbjct 2659 TAGAAAAATGCCTTTTGTTTCTATTGATGGCTTTGTTGTTTGGAGCTACTTTTGATTACTTATTGCAGTTTCCC 2732
Query 283 -------------------------------------------------------------------------- 282
Sbjct 2733 AATTTAGTCTTTACTTTATCTAACTCACAAAGTAAAATTAACTGATCACATGGCAACTACTGTATTTAAATAGT 2806
Query 283 -------------------------------------------------------------------------- 282
Sbjct 2807 TCTGGAAAAATGAAAGTGCTTTTTGCTGCTTGGTAAATGGGTAATGCCCTTGATTCCTTGACTGTAGGACATAG 2880
Query 283 -------------------------------------------------------------------------- 282
Sbjct 2881 CTGATCTAAAGTACTCTGTCAGTTTTACCTTCACCCATGACTGTTATTAGTTGTCAAAGTTGAAAAGTACTTTA 2954
Query 283 -------------------------------------------------------------------------- 282
Sbjct 2955 GCTGTGAGAAATCCTTGTATGTTTTTATTATAAGAGGTATAATCATCCTCAAAGCCTGTTTTTATTACATGATG 3028
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3029 TGGACTGATTATTTTTTCTATCACAGTGTTAACAGATGGATTTTATTGTAAATACAAAGAAAACATATTGATTA 3102
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3103 TTGTAGTATTCTTATGTCACCTGGCCTTTTGCGTGAGATTATTTATTATTTCTAGCAAGGCTTTCTTCCTTTCT 3176
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3177 TATTGCCCAGAGACTGACTGATACATCTTTTGTTATTTTTACACATAAATTAAACATAGCCTTTTTGGACAAAT 3250
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3251 TCACTAAATATTAATGTATAAAATGTAATTGAGTAAATTTTTATCAGAATTTTAAAAATAAAAGAGCTTAGACT 3324
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3325 CAGTAGAACTCAGTAGAAGCTTCACTATTTACTCCAGCGTGTGTAAATTGTACTTACTCTATTCTCAGAGTATA 3398
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3399 TTTACTGTCCTTACCATTGATTCTTTCCCTTTGCTAATTTTTTTTTTTGTTAATGGTAGCTGCGACTTTAGGTG 3472
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3473 GGGTATATTTTCTTCTCCTAAGAGAATAGACAGTTTTTCCAGATTCATCATCATTGACTGTCAAGAAAGGACCC 3546
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3547 TTCAGCAAGGCTGTACCCTCAATGCAGTTGATGGCCTGTCTTCACGGATTTACAGACTTGGCCTGATGCCCATG 3620
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3621 TAAATTCAAGCTTTGGCTTGTGGTAACAACCACAAGAAGACAAGCATCTGTGGTGCGGAGGCAAGCAGGCTAAC 3694
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3695 TAGGAGTTGACAAGCTAAGAAAGTGAAACTGTTCTTTCTTAGTTAACTGTCTTTCTCTGGAGCTCTGTTATTTT 3768
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3769 GAGTATAATATTTCCATGACACTTAGTAAATGCAAGCTAAAATGTAATAATAATAAATTGTATTGGAGAAACCT 3842
Query 283 --- 282
Sbjct 3843 AAA 3845
