Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_13781
Subject:
XR_001747881.1
Aligned Length:
3851
Identities:
244
Gaps:
3575

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  TTTAGCCTGTGGTGGGCGCTGCGGGTGTTTGCAGGAGGTTGCAGTACTCGCTGGGCTGAGGTCGTCTCGGGTGA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GGAGGTCGCGCCGGAAGTGGCTCTAGCCGTGGCGCTTCGGCGTAGTAAGGAGCCTGCAACAGAGTTTTGTTGTT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  TAGGGGGCGCGGCACCGCACCGCTCCCTTCACCTTGCAGCAGCCATGGCGAAAGGCAGAGTCGCCGAACGATCG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  CAGTTGGGCGCTCACCACACGACCCCCGTGGGGGACGGGGCAGCGGGGACGCGGGGTCTCGCGGCGCCTGGCAG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CAGAGACCACCAGAAGGAAAAATCCTGGGTAGAAGCTGGATCAGCAAGAATGTCACTCCTTATATTGGTGTCCA  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  TTTTCTTATCTGCAGCTTTTGTTATGTTTTTGGTATATAAAAATTTTCCTCAGCTTAGTGAAGAAGAAAGAGTG  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  AATATGAAGGTTCCCAGAGATATGGATGATGCCAAGGCTCTAGGAAAAGTTTTATCCAAATACAAGGACACCTT  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  TTATGTTCAAGTACTTGTAGCTTATTTTGCTACATATATTTTTTACCAGCTTGCAAACATTTGCTATTCCAGGC  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  TCTATATTTCTCAGTATACTCTCAGGGTTTCTTTATCCCTTTCCACTAGCCTTATTTCTTGTTTGTTTGTGTTC  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  TGGACTTGGTGCCTCTTTCTGTTATATGCTTTCCTATTTAGTTGGGAGACCAGTTGTATACAAATACCTAACAG  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  AGAAAGCAGTAAAATGGTCACAGCAGGTTGAACGTCATAGAGAACATCTCATTAACTACATTATATTTTTGAGA  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  ATAACACCATTTCTGCCTAATTGGTTTATTAATATCACATCTCCTGTGATAAACGTGCCATTGAAAGTTTTTTT  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  TATTGGTACTTTTCTAGGTGTCGCACCTCCTTCTTTTGTAGCCATTAAGGCAGGAACAACACTGTATCAACTTA  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  CAACAGCAGGAGAAGCTGTTTCCTGGAACTCAATATTTATTCTGATGATCTTGGCTGTTCTTTCTATTCTGCCA  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  GCCATCTTCCAAAAAAAACTAAAGCAGAAATTTGAGTAAAAATAATCATCTGATTTTTAGTTTTGCTGTCATCA  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  CCATCTCAGGATTAACAGGTGCATCCATTTATGTTTTAAAATCACCTCTTCAGTAATTAAACAAGGAATTTGTA  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  AAATAAAATTTCCTATCAGATAGTTAAAGTAATACATTTAAGTGACAAGGGGAGAAGAAAGTAAAAATGGAAAT  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  TGGTATACTGTGAAAAGTGCTATCAATAGTTAAGGTAGACATCTTAGACATCTTATAAATTATTATACCAAGGG  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  TAGCTGTAGATAATAGTAGTGTGGTAGGAAATTGTTGATCCAGCTAATTCATTCAATTTAATTGAATATTTTTT  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  ATCTTTAATAACTAAAATAGATATTTTTAAATTCTAGATTTTTTAAAGTAGTGTTGCAGGTTTTGTTAATGTTA  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  GGCTTTTTTCAGAGCATAAACTGGAAAACTTAAAAAGAGATTTACATTTTCTTCCTCTTTTTTTTTTTTTTTTT  1554

Query    1  --------------ATGGAGTCTTGCTCTGTCACCCAGGCTGGAGTGCAATGGCGCGATCTCCACTCACTGCAA  60
                          |.|||||||.||||||.|.||||||||||||||||.||||||||||||||||||||||||
Sbjct 1555  TTTTCTGTTTTGAGACGGAGTCTAGCTCTGCCGCCCAGGCTGGAGTGCAGTGGCGCGATCTCCACTCACTGCAA  1628

Query   61  CCTCTGCGTACCAGGTTCAAGCGATTCTCCTGTCTCAGCCTCCTGAGTAGCTGGGATTACAGGTGCCCACCACC  134
            .|||..|.|.|..||||||.||.|||||||||||||||||||||||||||||||||.||||||.||||.|||||
Sbjct 1629  GCTCCACCTCCTGGGTTCACGCCATTCTCCTGTCTCAGCCTCCTGAGTAGCTGGGACTACAGGCGCCCGCCACC  1702

Query  135  ACAGCTG----GCTAA--TTTTTGTATTTTTAGTAGAGACTGGGTTTTACCATATTGGCCAGACTGGTCTCGAA  202
            |    ||    |||||  ||||||||||||||||||||||.||||||.|||.|.||.|||||..|||||||||.
Sbjct 1703  A----TGCCCAGCTAATTTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCGTGTTAGCCAGGATGGTCTCGAT  1772

Query  203  CTCCTGACCTCAGGTGGTCCGCCTGCCTTGGCTTCCCAAAGTGCTGGGATTATAGGAGTGAGCCACTGCGCCTG  276
            |||||||||||  |||.||.|||.||||||||.|||||||||||||||||||.|||.|||||||||.|||||||
Sbjct 1773  CTCCTGACCTC--GTGATCTGCCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCTG  1844

Query  277  G-CCATT-------------------------------------------------------------------  282
            | |||||                                                                   
Sbjct 1845  GCCCATTTTCTTCCTCTTTTGAGGTAATGGATTTGTTTGGAGATGGCATGTTAGTAGACGACTGAATATGGAAA  1918

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 1919  GGATATCAAGTTATCTATTTTGTTAATTTTATTTTTGTTTTTTATCATCTAGATTTTTATCATGGATTAGTCTG  1992

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 1993  AAATTTAAAGTTCTGGCCAGTCGGTTTTCTTTCATCTTGTAGTTTTTACAGTATTTCCACTGTGCATATGCAAA  2066

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 2067  ATGGGTATTACATAACTGTATCATATTTGGTATTGATAATTTTTTTTTTTTTTGAGACGGAGTCTTGCTGTTGC  2140

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 2141  CCAGGCTGGAGTGGAGTGCGTGGTGTGATCTCGGCTCACTGCAAACTCCGCCTCCTGGGTTCAAGCGATTCTCC  2214

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 2215  TGGCCCAGCCTCCTGAGTAGCTGGGATTACAGGTGTGTGCCACCGTGCCCAGCTAATTTTTGTGTTTTTAGTAG  2288

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 2289  AGACGGGGTTTCACCATGTTGGCCGGGCTGGTCTTGAACTCCTGACCTCAGGCTATATGCCCACTTCCACCTCC  2362

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 2363  CAAAGTGCTGGGATTACAGGCATGAGCCACTGTGCCCAGCCTGGTATTGATAATTTATATTCAGATAATTTGTT  2436

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 2437  ATGGCTCTTTAATATCCCACAAGGGGCTCTAAAAAGCAAACATTCAAGAGTATGTAGTTTTTAGACATTAAGTT  2510

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 2511  AATTATTTTAAACAGTGACAGCAAAACACAAGTGATTAAATATAGTTTATTTGTTCCAATGACTAAATTTTACC  2584

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 2585  TCATTTATTAATCTGGTCATTAAGGAATATATTTAATAATATTATGTAATTATTCTTTTTATGCATGATACACC  2658

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 2659  TAGAAAAATGCCTTTTGTTTCTATTGATGGCTTTGTTGTTTGGAGCTACTTTTGATTACTTATTGCAGTTTCCC  2732

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 2733  AATTTAGTCTTTACTTTATCTAACTCACAAAGTAAAATTAACTGATCACATGGCAACTACTGTATTTAAATAGT  2806

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 2807  TCTGGAAAAATGAAAGTGCTTTTTGCTGCTTGGTAAATGGGTAATGCCCTTGATTCCTTGACTGTAGGACATAG  2880

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 2881  CTGATCTAAAGTACTCTGTCAGTTTTACCTTCACCCATGACTGTTATTAGTTGTCAAAGTTGAAAAGTACTTTA  2954

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 2955  GCTGTGAGAAATCCTTGTATGTTTTTATTATAAGAGGTATAATCATCCTCAAAGCCTGTTTTTATTACATGATG  3028

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3029  TGGACTGATTATTTTTTCTATCACAGTGTTAACAGATGGATTTTATTGTAAATACAAAGAAAACATATTGATTA  3102

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3103  TTGTAGTATTCTTATGTCACCTGGCCTTTTGCGTGAGATTATTTATTATTTCTAGCAAGGCTTTCTTCCTTTCT  3176

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3177  TATTGCCCAGAGACTGACTGATACATCTTTTGTTATTTTTACACATAAATTAAACATAGCCTTTTTGGACAAAT  3250

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3251  TCACTAAATATTAATGTATAAAATGTAATTGAGTAAATTTTTATCAGAATTTTAAAAATAAAAGAGCTTAGACT  3324

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3325  CAGTAGAACTCAGTAGAAGCTTCACTATTTACTCCAGCGTGTGTAAATTGTACTTACTCTATTCTCAGAGTATA  3398

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3399  TTTACTGTCCTTACCATTGATTCTTTCCCTTTGCTAATTTTTTTTTTTGTTAATGGTAGCTGCGACTTTAGGTG  3472

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3473  GGGTATATTTTCTTCTCCTAAGAGAATAGACAGTTTTTCCAGATTCATCATCATTGACTGTCAAGAAAGGACCC  3546

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3547  TTCAGCAAGGCTGTACCCTCAATGCAGTTGATGGCCTGTCTTCACGGATTTACAGACTTGGCCTGATGCCCATG  3620

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3621  TAAATTCAAGCTTTGGCTTGTGGTAACAACCACAAGAAGACAAGCATCTGTGGTGCGGAGGCAAGCAGGCTAAC  3694

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3695  TAGGAGTTGACAAGCTAAGAAAGTGAAACTGTTCTTTCTTAGTTAACTGTCTTTCTCTGGAGCTCTGTTATTTT  3768

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3769  GAGTATAATATTTCCATGACACTTAGTAAATGCAAGCTAAAATGTAATAATAATAAATTGTATTGGAGAAACCT  3842

Query  283  ---  282
               
Sbjct 3843  AAA  3845

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