Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_13781
- Subject:
- XR_002957766.1
- Aligned Length:
- 4875
- Identities:
- 243
- Gaps:
- 4597
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ACAGAGGACGTGGGCGCCCGCCGAAGTACGTGTGCGCGCGCGCGTTTGCAGGAAAACGTGCATGGATTTCTTCG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GTGTGGCAGAGAAGGCGCCTAGGCGCTGTCCGTAGTGCTGAAATGGTGCGTGGTGAGACCTGTCTCCCCAACAC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AAGCTAGAAGACAACAAAATAGCAGCCAGGAAACGCTCTGATAAAGCTCTAGATAGCTGCCAGGCCGAGCTCAA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GGGAGCAGAACTAAGTTACATGATTCTGCTGCGGATGTATAAGCACCACTCCAATAATTTATTATCACGGTTGG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 AGACTTTGACTTGTCACTTTATGACTTGAAATATGGCTCCATGGTAAATGCCCATAAAGCTGATTTTTAAAATC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TGGATATTACAGTTCTAATTCTCACTTAGTTTAAAAGGTAGAATAGGCTTCTTGTTTCATAGATCATTTGTGTG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 AATGTTGATTTGTTATGTCATTGACATCATACACACATGCTTACATTTTGAAGGTTGCTAGCGTTTCCCATTAA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 TGCTTCTGAATTGATGCCAAAGGAAAGCATTGATTATAAATTAGGTTCCTTGGTATTAGTTGGTGCATGACCCT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GACCCTTTTCAAGCTATATGAAAGGTAATGATGCTCTCAAAAGCCTGCAAAATGGCTTATTCAGGAAAGCATAA 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TGGATTAAAAATCCATTAGGTTCCACTTTCTTTGCTAGATGCTGAGATACAAAGATAAATGAGATTTGGTCTCT 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 GCCCTCGAGGAGATACGTGGCAAAATAATATGGTAAGTTCTACAAAGTTCTATACAAACACAGATTAATATGCT 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 ATTCATGTTTTATTAGCCATTGCCAAAGAAGGGATGAAGAACTGCAAAAAGATAAAACACAGAATACTTGTACT 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 TCAGGTCCTTGCCAATATCTACTGCCCAACTTTTACAAAAAAAATTGCTGAAAGGCATGAAATATATGAATGCC 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 TTTCTAAAGCACATGTGGATAATCTATACTTCTGGAGCATCTATGATTTATTTTCAGAACAATCCAAGTTATTA 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 GAAAGGTAAATATGTTGGTGACATTGTTTAGAAGTTCCTCAAGCAGAATTGCCTTTACTATGCTTTGACATTAT 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 GCTCTCAGCTTATATACAGTAATTCTATGTGAAACAGTAGCCAGCTTACACAACCTGCTCTATATCTACTACAG 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 AGCTGTTACTAAAGTGTTGGTCAACATATAACTTACTATTTCTTATATAAAGATGCCCAAGAAATTTAGATTTC 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 ATAGATATATCCCCAAAAGCATTTCTTTCAATACCAGTTTAATGAATTGAACTTTCATACCTCACTTAAATCAA 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 CCCAGGGTAAAGTGGTATGTTCTGTTCTTACACACAATGAAAATCATGTAACTAATTAAAGTTAGCATTTATTT 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 TAGCTACTAGGGATGCCAGAGTCAAATTAACAGCTGAAAATGAATAACTACATAAGACCTTAAGCCTTTTATAT 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 CTTTTCTTTTTTTTTAATCACCTTAACTACTGCAATTTTGGTTTCTTAGGTAATGATAATATTATTTTCTTTTA 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 ATTATTTGTTTTAATGTGTGACCTCATGTAAATGTCCTCATAAAATCAGAAGTGGAGTAAATAAATAAATAAAG 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 TAAATTTCTCTACTTTTTGATTATTGGGTGAGTGTATATGGTTGTTTTATAAATTTATTCTAAATAGGATACTA 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 AAATACAGAAAATGTATCATCTAATTAGCTATGAAGATAAAAATCTAAACTATAATGAGGAAATATTAAAATGT 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 CAAGATGACGAAGAAATTTTTCAGTTTATATAATTATAGATCAGCTTAATTTCAAACCACTTTGTTACCCTATT 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 GCTATTTTTATACTCTAAATAGTGTCCCTTATATGACTAAGACTTTTTGTTATCTCAGAGATTGGAAGTGTTAA 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 TTGTCCACCTTGTTAGAAGACATGGTAACTATAGGAATTTAGAAAGCATGATAGCCCAACTGTAATGAATATAT 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 TCTAGAATGAGGTTGTCACAAAGAAACTGAAAACAAGAATTTCCTCTAACAACTGAGCTCAGGATTCTTTTCAG 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 AGGAAAATTTAGCTTGCATAAATTCTTGCCATCTTGGCTCTAGTTGACTTCTTGCTCTCAACTTTTGCAAAGTG 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 AGATCACCTTTACCTCTTCAACCTATGAGGCCAACATGTTACTTTCAATTTTTCAGGAAAATCTACGTCTTGTT 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 TGGCTGAGGTTTGATTATTATTCCTTAACTAAAATATTTTAATGTAGCTGTGCTTTTTAATTTGAATATTGCTA 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 TTGATTCAAACATTGGGTAGCATATCTTTCAAATGTGAAATTTTAAAACATGTATTAAAGACAAACATAAATTA 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 GTTTTGGTATAACTATTTTTTAAGATTAATCCAATGCTTTTTTGGCTTTAGATGATGTTTGGTAATTAGCTATA 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 TTCAAAAGTCAACCTTTTTTTTTTTTCAAAAAATGAACTCCTATGTATATGAGTGTTATTTTTATCTACCCATG 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 TCTTTTTTGTCTACATATACAGTTTTAATCATTGTTTCGGGGGGAGGAATAAGAATGATTTTGAAATTTCACTA 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 AGAAAGATATGCCCTCTTCCTAAAAATACATATATACAGATGTTTTGCTCACAGCTCAGGTATTCATGGATCTC 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 TGGAAGTTCATTTTTATAATCCCAAGGTAATCCAAAGAGCCTGCTAAAAAATTCTGCTGTAAATGCATGGTACA 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 TGATCTCATTCCCTGTTTTACAACGAAGTATTGAATGGCTTAAACTCCTACTTTTTTTTTTTTTTTTTTTTTTG 2812
Query 1 --ATGGAGTCTTGCTCTGTCACCCAGGCTGGAGTGCAATGGCGCGATCTCCACTCACTGCAACCTCTGCGTACC 72
|||||||||..||||||.|||||||||||||||||.||||.|||||||..|||||||||||||||||.|.|.
Sbjct 2813 AGATGGAGTCTCCCTCTGTTACCCAGGCTGGAGTGCAGTGGCTCGATCTCTGCTCACTGCAACCTCTGCCTCCT 2886
Query 73 AGGTTCAAGCGATTCTCCTGTCTCAGCCTCCTGAGTAGCTGGGATTACAGGTGCCCA--CCACCACAGCTGGCT 144
.|||||||||||||||||||.||||||||.|||||||.||||||||||| .||.|| |||.||...||||||
Sbjct 2887 GGGTTCAAGCGATTCTCCTGCCTCAGCCTTCTGAGTAACTGGGATTACA--AGCACATGCCATCAGGCCTGGCT 2958
Query 145 AA-----------TTTTTGTATTTTTAGTAGAGACTGGGTTTTACCATATTGGCCAGACTGGTCTCGAACTCCT 207
|| |||||||||||||||||.|..|.||||||.|.|||.||||.|||.||||||||||||||||
Sbjct 2959 AATTTTTATTTTTTTTTTGTATTTTTAGTACAATCAGGGTTTCAGCATGTTGGTCAGGCTGGTCTCGAACTCCT 3032
Query 208 GACCTCAGGTGGTCCGCCTGCCTTGGCTTCCCAAAGTGCTGGGATTATAGGAGTGAGCCACTGCGCCTGGCC-- 279
||||||| ||.|||||||||||||||||||||||.|||||||||||.|||.||||||||..||||||||||
Sbjct 3033 GACCTCA--TGATCCGCCTGCCTTGGCTTCCCAAAATGCTGGGATTACAGGCGTGAGCCAACGCGCCTGGCCAA 3104
Query 280 ---------ATT-------------------------------------------------------------- 282
|||
Sbjct 3105 CTCCTACATATTTTAAAGCCACCCCATTAGTTTTCTATTTTTTTCCCCTTGGAGATCTTCCTTTAGGTCATTTT 3178
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3179 TACCATCTGATATCTCAAAACTAAGCCAAGGCTGAATGTGCTGAAATAGGATTAGAGAGTACAGTAATAGGATA 3252
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3253 ATTAGATTTGATTAGAAAATGACTGTGTGGGATTTTGTCAACAGTGAAGAAATGATCTAAGTATGTGGACTCCT 3326
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3327 AAGTGAATTGAGCATGATGACACTTTAGTGTAGTTAATGATCTAATGCTGGTCTGGTTGATGAGTCCCATTGAA 3400
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3401 AATGAGATGCTCTGTTTTCTGGTAAACTTTTCTGCAAAGAAAAATGTACTAAATGTTTCAGTTCAGAGTGTTCT 3474
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3475 ATTTAAATGAAATTTCATTTAATTGCTTTTAGTTTTACTGCCCATAAGCCTTCAGTTGTTTCATTTAAAGTGTA 3548
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3549 CTTTAAGCCCTCCACTATATTCACTGTTGAATCTAATGAGTATGAGAGGGTACCTTGGGCACAATCTCCACGAA 3622
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3623 TGTATGAGCCATAACTACAGTATAGTATATAGAGATTAGCTTAAGTTATTTTGCTCTGCTAAAGATAGAGAAAC 3696
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3697 AAGAGCAGTTTTCTAACATAATGTATGCTTCTGTAATAGGACTCAGTTAAAAAATAATTGGCAAATAGGAATGT 3770
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3771 CAATGAAATGTGGAAATCAATTGTTTTATACATGATTTTCCCCAATACGTTAATGTTTTGACTACCAAGTAAAA 3844
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3845 GCAGTTGCACTCTAAGTCCACTAACACAGCTGAAGGTAGTAAGCTGTGGAGGAAAGTAGTCCTATATATAACAC 3918
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3919 CCATTCACTCCTCCTTTTTCCTCTTGGCTTAATTTCACCATACGATCTGTCTTGAAAATGCTTATTGCACAATT 3992
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3993 CTTCCTGATCTTTGTGCATTTGTCCTTGTTTTTGTAACTCAACCTTTGGTTTATTTATTCCATCATTCTTTCCT 4066
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4067 AACTCAAACAAATTTGTGAAGTTCTAAATGTATTGAAATATATGTCGTAACTTTTATTTTTAATTGTGCTAGCA 4140
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4141 TTTTCTTAGCTTTGTAAATGTTTTTTGCAGTGCTATGGTTGTGATGTTATGTAAGTTTTACACTTTTTTCTCCA 4214
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4215 ACATAATTTTTTCCCGAAATATTGCCAGTTATTTTTGTTATTGAATAGACTTAATTTTCTTAGAGCAGTTTCAG 4288
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4289 GATTACAGAAAAGTCAGAGAGTACAGAAAGTTCCCATATATCTCCCATCCCTTTTCTCACAGTTTCACTTGTTA 4362
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4363 TTAACATCTTACATTAGTGTGGTACATTTGTTAACAATTGATAAAACAATTTTGTTACATTATTATTAAGTACA 4436
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4437 CAGTTTACACTAGAGTTTATTCTTTTTGTTGGTCAGTTCTATGAGTTTTGAATAGTGTATAATGTCATATATTC 4510
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4511 ACCATTATATTGTCATGCAGAATAGTTTCACATTTCTGAATATCCCCTATTTATCCCTTCCTCTTCCCCTCACA 4584
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4585 AACCCCTGGAATCCATTGATCTGAAACTGTCTTGCAGTTTTCTCTTTTCCAGAATGTATGTATAGAGTCATACA 4658
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4659 GACTCTGTTGCCCTTTCAAACTGGCTTCTTTCATTTAACAACACGCATGTAAGCATCCTTCATGACTTTTCATG 4732
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4733 GCTTGATAGCTCATTTATTTTTTATTGTTCAATAATATTTCATTGTATGGATATGCCACAGTTTATTTATCTAT 4806
Query 283 ----------------------------------------------------------------- 282
Sbjct 4807 ATATCTGTTGAAAGATATCTCGGTTACTTCCAATTTTTGGCAATTATGAATAAAGATACTATAAA 4871
