Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_13781
- Subject:
- XR_002957768.1
- Aligned Length:
- 4973
- Identities:
- 243
- Gaps:
- 4695
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GTTTGTCTGTGTTCGCTGATCGGTTCAGTAACAAATGTAGAAGGCGTGTTCTGGAACCTGCGTAGAGTCACAGG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GCCCTGGAGAAGGCGCCTAGGCGCTGTCCGTAGTGCTGAAATGGTGCGTGGTGAGACCTGTCTCCCCAACACAA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GCTAGAAGACAACAAAATAGCAGCCAGGAAACGCTCTGATAAAGCTCTAGATAGCTGCCAGGTGATGCCAGAGA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TTACTAGTTTTGGGACCAATTAAAGTAGCAAGATGCAGCCAGGAGTGGTGGCTTATGCCTGTAATCCCAGCACT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TTGGGAGGCCGAGGCCGAGCTCAAGGGAGCAGAACTAAGTTACATGATTCTGCTGCGGATGTATAAGCACCACT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CCAATAATTTATTATCACGGTTGGAGACTTTGACTTGTCACTTTATGACTTGAAATATGGCTCCATGGTAAATG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CCCATAAAGCTGATTTTTAAAATCTGGATATTACAGTTCTAATTCTCACTTAGTTTAAAAGGTAGAATAGGCTT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CTTGTTTCATAGATCATTTGTGTGAATGTTGATTTGTTATGTCATTGACATCATACACACATGCTTACATTTTG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 AAGGTTGCTAGCGTTTCCCATTAATGCTTCTGAATTGATGCCAAAGGAAAGCATTGATTATAAATTAGGTTCCT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TGGTATTAGTTGGTGCATGACCCTGACCCTTTTCAAGCTATATGAAAGGTAATGATGCTCTCAAAAGCCTGCAA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 AATGGCTTATTCAGGAAAGCATAATGGATTAAAAATCCATTAGGTTCCACTTTCTTTGCTAGATGCTGAGATAC 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 AAAGATAAATGAGATTTGGTCTCTGCCCTCGAGGAGATACGTGGCAAAATAATATGGTAAGTTCTACAAAGTTC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 TATACAAACACAGATTAATATGCTATTCATGTTTTATTAGCCATTGCCAAAGAAGGGATGAAGAACTGCAAAAA 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 GATAAAACACAGAATACTTGTACTTCAGGTCCTTGCCAATATCTACTGCCCAACTTTTACAAAAAAAATTGCTG 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 AAAGGCATGAAATATATGAATGCCTTTCTAAAGCACATGTGGATAATCTATACTTCTGGAGCATCTATGATTTA 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 TTTTCAGAACAATCCAAGTTATTAGAAAGGTAAATATGTTGGTGACATTGTTTAGAAGTTCCTCAAGCAGAATT 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 GCCTTTACTATGCTTTGACATTATGCTCTCAGCTTATATACAGTAATTCTATGTGAAACAGTAGCCAGCTTACA 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 CAACCTGCTCTATATCTACTACAGAGCTGTTACTAAAGTGTTGGTCAACATATAACTTACTATTTCTTATATAA 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 AGATGCCCAAGAAATTTAGATTTCATAGATATATCCCCAAAAGCATTTCTTTCAATACCAGTTTAATGAATTGA 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 ACTTTCATACCTCACTTAAATCAACCCAGGGTAAAGTGGTATGTTCTGTTCTTACACACAATGAAAATCATGTA 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 ACTAATTAAAGTTAGCATTTATTTTAGCTACTAGGGATGCCAGAGTCAAATTAACAGCTGAAAATGAATAACTA 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 CATAAGACCTTAAGCCTTTTATATCTTTTCTTTTTTTTTAATCACCTTAACTACTGCAATTTTGGTTTCTTAGG 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 TAATGATAATATTATTTTCTTTTAATTATTTGTTTTAATGTGTGACCTCATGTAAATGTCCTCATAAAATCAGA 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 AGTGGAGTAAATAAATAAATAAAGTAAATTTCTCTACTTTTTGATTATTGGGTGAGTGTATATGGTTGTTTTAT 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 AAATTTATTCTAAATAGGATACTAAAATACAGAAAATGTATCATCTAATTAGCTATGAAGATAAAAATCTAAAC 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 TATAATGAGGAAATATTAAAATGTCAAGATGACGAAGAAATTTTTCAGTTTATATAATTATAGATCAGCTTAAT 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 TTCAAACCACTTTGTTACCCTATTGCTATTTTTATACTCTAAATAGTGTCCCTTATATGACTAAGACTTTTTGT 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 TATCTCAGAGATTGGAAGTGTTAATTGTCCACCTTGTTAGAAGACATGGTAACTATAGGAATTTAGAAAGCATG 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 ATAGCCCAACTGTAATGAATATATTCTAGAATGAGGTTGTCACAAAGAAACTGAAAACAAGAATTTCCTCTAAC 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 AACTGAGCTCAGGATTCTTTTCAGAGGAAAATTTAGCTTGCATAAATTCTTGCCATCTTGGCTCTAGTTGACTT 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 CTTGCTCTCAACTTTTGCAAAGTGAGATCACCTTTACCTCTTCAACCTATGAGGCCAACATGTTACTTTCAATT 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 TTTCAGGAAAATCTACGTCTTGTTTGGCTGAGGTTTGATTATTATTCCTTAACTAAAATATTTTAATGTAGCTG 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 TGCTTTTTAATTTGAATATTGCTATTGATTCAAACATTGGGTAGCATATCTTTCAAATGTGAAATTTTAAAACA 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 TGTATTAAAGACAAACATAAATTAGTTTTGGTATAACTATTTTTTAAGATTAATCCAATGCTTTTTTGGCTTTA 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 GATGATGTTTGGTAATTAGCTATATTCAAAAGTCAACCTTTTTTTTTTTTCAAAAAATGAACTCCTATGTATAT 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 GAGTGTTATTTTTATCTACCCATGTCTTTTTTGTCTACATATACAGTTTTAATCATTGTTTCGGGGGGAGGAAT 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 AAGAATGATTTTGAAATTTCACTAAGAAAGATATGCCCTCTTCCTAAAAATACATATATACAGATGTTTTGCTC 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 ACAGCTCAGGTATTCATGGATCTCTGGAAGTTCATTTTTATAATCCCAAGGTAATCCAAAGAGCCTGCTAAAAA 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 ATTCTGCTGTAAATGCATGGTACATGATCTCATTCCCTGTTTTACAACGAAGTATTGAATGGCTTAAACTCCTA 2886
Query 1 --------------------------ATGGAGTCTTGCTCTGTCACCCAGGCTGGAGTGCAATGGCGCGATCTC 48
|||||||||..||||||.|||||||||||||||||.||||.|||||||
Sbjct 2887 CTTTTTTTTTTTTTTTTTTTTTTGAGATGGAGTCTCCCTCTGTTACCCAGGCTGGAGTGCAGTGGCTCGATCTC 2960
Query 49 CACTCACTGCAACCTCTGCGTACCAGGTTCAAGCGATTCTCCTGTCTCAGCCTCCTGAGTAGCTGGGATTACAG 122
..|||||||||||||||||.|.|..|||||||||||||||||||.||||||||.|||||||.|||||||||||
Sbjct 2961 TGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTTCTGAGTAACTGGGATTACA- 3033
Query 123 GTGCCCA--CCACCACAGCTGGCTAA-----------TTTTTGTATTTTTAGTAGAGACTGGGTTTTACCATAT 183
.||.|| |||.||...|||||||| |||||||||||||||||.|..|.||||||.|.|||.|
Sbjct 3034 -AGCACATGCCATCAGGCCTGGCTAATTTTTATTTTTTTTTTGTATTTTTAGTACAATCAGGGTTTCAGCATGT 3106
Query 184 TGGCCAGACTGGTCTCGAACTCCTGACCTCAGGTGGTCCGCCTGCCTTGGCTTCCCAAAGTGCTGGGATTATAG 257
|||.|||.||||||||||||||||||||||| ||.|||||||||||||||||||||||.|||||||||||.||
Sbjct 3107 TGGTCAGGCTGGTCTCGAACTCCTGACCTCA--TGATCCGCCTGCCTTGGCTTCCCAAAATGCTGGGATTACAG 3178
Query 258 GAGTGAGCCACTGCGCCTGGCC-----------ATT-------------------------------------- 282
|.||||||||..|||||||||| |||
Sbjct 3179 GCGTGAGCCAACGCGCCTGGCCAACTCCTACATATTTTAAAGCCACCCCATTAGTTTTCTATTTTTTTCCCCTT 3252
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3253 GGAGATCTTCCTTTAGGTCATTTTTACCATCTGATATCTCAAAACTAAGCCAAGGCTGAATGTGCTGAAATAGG 3326
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3327 ATTAGAGAGTACAGTAATAGGATAATTAGATTTGATTAGAAAATGACTGTGTGGGATTTTGTCAACAGTGAAGA 3400
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3401 AATGATCTAAGTATGTGGACTCCTAAGTGAATTGAGCATGATGACACTTTAGTGTAGTTAATGATCTAATGCTG 3474
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3475 GTCTGGTTGATGAGTCCCATTGAAAATGAGATGCTCTGTTTTCTGGTAAACTTTTCTGCAAAGAAAAATGTACT 3548
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3549 AAATGTTTCAGTTCAGAGTGTTCTATTTAAATGAAATTTCATTTAATTGCTTTTAGTTTTACTGCCCATAAGCC 3622
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3623 TTCAGTTGTTTCATTTAAAGTGTACTTTAAGCCCTCCACTATATTCACTGTTGAATCTAATGAGTATGAGAGGG 3696
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3697 TACCTTGGGCACAATCTCCACGAATGTATGAGCCATAACTACAGTATAGTATATAGAGATTAGCTTAAGTTATT 3770
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3771 TTGCTCTGCTAAAGATAGAGAAACAAGAGCAGTTTTCTAACATAATGTATGCTTCTGTAATAGGACTCAGTTAA 3844
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3845 AAAATAATTGGCAAATAGGAATGTCAATGAAATGTGGAAATCAATTGTTTTATACATGATTTTCCCCAATACGT 3918
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3919 TAATGTTTTGACTACCAAGTAAAAGCAGTTGCACTCTAAGTCCACTAACACAGCTGAAGGTAGTAAGCTGTGGA 3992
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3993 GGAAAGTAGTCCTATATATAACACCCATTCACTCCTCCTTTTTCCTCTTGGCTTAATTTCACCATACGATCTGT 4066
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4067 CTTGAAAATGCTTATTGCACAATTCTTCCTGATCTTTGTGCATTTGTCCTTGTTTTTGTAACTCAACCTTTGGT 4140
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4141 TTATTTATTCCATCATTCTTTCCTAACTCAAACAAATTTGTGAAGTTCTAAATGTATTGAAATATATGTCGTAA 4214
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4215 CTTTTATTTTTAATTGTGCTAGCATTTTCTTAGCTTTGTAAATGTTTTTTGCAGTGCTATGGTTGTGATGTTAT 4288
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4289 GTAAGTTTTACACTTTTTTCTCCAACATAATTTTTTCCCGAAATATTGCCAGTTATTTTTGTTATTGAATAGAC 4362
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4363 TTAATTTTCTTAGAGCAGTTTCAGGATTACAGAAAAGTCAGAGAGTACAGAAAGTTCCCATATATCTCCCATCC 4436
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4437 CTTTTCTCACAGTTTCACTTGTTATTAACATCTTACATTAGTGTGGTACATTTGTTAACAATTGATAAAACAAT 4510
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4511 TTTGTTACATTATTATTAAGTACACAGTTTACACTAGAGTTTATTCTTTTTGTTGGTCAGTTCTATGAGTTTTG 4584
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4585 AATAGTGTATAATGTCATATATTCACCATTATATTGTCATGCAGAATAGTTTCACATTTCTGAATATCCCCTAT 4658
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4659 TTATCCCTTCCTCTTCCCCTCACAAACCCCTGGAATCCATTGATCTGAAACTGTCTTGCAGTTTTCTCTTTTCC 4732
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4733 AGAATGTATGTATAGAGTCATACAGACTCTGTTGCCCTTTCAAACTGGCTTCTTTCATTTAACAACACGCATGT 4806
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4807 AAGCATCCTTCATGACTTTTCATGGCTTGATAGCTCATTTATTTTTTATTGTTCAATAATATTTCATTGTATGG 4880
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4881 ATATGCCACAGTTTATTTATCTATATATCTGTTGAAAGATATCTCGGTTACTTCCAATTTTTGGCAATTATGAA 4954
Query 283 --------------- 282
Sbjct 4955 TAAAGATACTATAAA 4969
