Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_13781
- Subject:
- XR_926295.3
- Aligned Length:
- 5724
- Identities:
- 240
- Gaps:
- 5452
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TTCCTATGTAGCCCAGGCTGGTCTTGAACTCCTGGGCTCAAGTGATCCACCCAACTTGGTCTCCCAAAGTGCTG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GGATTATAGGCGTGATCCACTGTGCCTGGCCCTGTCATTTCTTTTCTCAGAGAGGATAACAATTTATTTGTCCT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 ACAGAAAGTTTTAAATGTTGAAGGAGATTGGCCTGGAAATATGCTTTTGGGGAGCAACACGGTCTGAGCCAGAC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 ATCCAGATACAGCCCATTCTTCTGGCCAGTCTTGCCCTTTGCTCCTGATTCTCCAAGCTGTACCCAGAGCTTTC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TGGTTCAGCATGTACCTGGAGGCTGCTTTTGACCATGTTTTGAGAGTGGCATGGCTTTATCTAATGGGATGAAC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CTGGCTAAAGAGATTAGCAAAATGTCTTGTGGATCCCACTTTTAATCTGCAGCGTTCAGGCTGCCCCTTCTTGG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CTGGGAAGGGCGCTGAAGAAACAACGCCCAGGACCAGGACTATCCCCTGCTCAAGCTGTGATTCCGAGACCCCT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GCCACCACTACTGCATTCACGGGGATCCCAGGCTAGTGGGACTCGACATGGGTAGCCCCCAGGGCAGCTCCCTA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CAGCTTGGGCCATCTGCACTTTTCCCAAGGCCCTAAGTCTCCGCCTCTGGGCTCGTTAAGGTTTGGGGTGGGAG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 CTGTGCTGTGGGAAGCAACCCGGACTACACTTGGCAAGCATGGCGCTACTGAAAGTCAAGTTTGACCAGAAGAA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 GCGGGTCAAGTTGGCCCAAGGGCTCTGGCTCATGAACTGGTTCTCCGTGTTGGCTGGCATCATCATCTTCAGCC 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 TAGGACTGTTCCTGAAGATTGAACTCCGAAAGAGGAGCGATGTGATGAATAATTCTGAGAGCCATTTTGTGCCC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 AACTCATTGATAGGGATGGGGGTGCTATCCTGTGTCTTCAACTCGCTGGCTGGGAAGATCTGCTACGACGCCCT 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 GGACCCAGCCAAGTATGCCAGATGGAAGCCCTGGCTGAAGCCGTACCTGGCTATCTGTGTTCTCTTCAACATCA 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 TCCTCTTCCTTGTGGCTCTCTGCTGCTTTCTGCTTCGGGGCTCGCTGGAGAACACCCTGGGCCAAGGGCTCAAG 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 AACGGCATGAAGTACTACCGGGACACAGACACCCCTGGCAGGTGTTTCATGAAGAAGACCATCGACATGCTGCA 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 GATCGAGTTCAAATGCTGCGGCAACAACGGTTTTCGGGACTGGTTTGAGATTCAGTGGATCAGCAATCGCTACC 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 TGGACTTTTCCTCCAAAGAAGTCAAAGAGTTGCAGGATGAGCAGAGCTGCAGTGTCTTGGGGTGAGAGGTAGAA 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 CATGCGGGAGCTCAGACATTTTGGAACCAGGAACTACCAGCCAGGAAGGCCCAGCCTGGGGTCCCCAGTCTGAG 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 GGAGAAGCTGGCACCAAGCTCTTGCTCTTCACCATTCTTCCCAGGGAACCCACAGACTACAGTCGAATCAAGAG 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 CAACGTGGATGGGCGGTACCTGGTGGACGGCGTCCCTTTCAGCTGCTGCAATCCTAGCTCGCCACGGCCCTGCA 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 TCCAGTATCAGATCACCAACAACTCAGCACACTACAGTTACGACCACCAGACGGAGGAGCTCAACCTGTGGGTG 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 CGTGGCTGCAGGGCTGCCCTGCTGAGCTACTACAGCAGCCTCATGAACTCCATGGGTGTCGTCACGCTCCTCAT 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 TTGGCTCTTCGAGGTGACCATTACAATTGGGCTGCGCTACCTACAGACGTCGCTGGATGGTGTGTCCAACCCCG 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 AGGAATCTGAGAGCGAGAGCCAGGGCTGGCTGCTGGAGAGGAGCGTGCCGGAGACCTGGAAGGCCTTTCTGGAG 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 AGTGTGAAGAAGCTGGGCAAGGGCAACCAGGTGGAAGCCGAGGGCGCAGACGCAGGCCAGGCCCCAGAGGCTGG 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 CTGAGGGCCCTGGGGCCCCTCCCCTCCCGAACACTGAGAAATAGTGCACTCCAAGAAACGTGGATCTCCCCCTC 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 ATCCAACTCCGAAAGTCTGAATCTCCCAAGGAGGGCACCATCTTACAGAGACTCTCCCTGACGGTGGAATTTAA 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 GTTTAGGGTCCCTAAAAGCATTTGACACACAGTTGTTGAATGACTGACCCAAAATGTGAATGAAGCTAATGTGA 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 ATGTGAGTGAAGCTCCCTTCAGGCCCGCTGCCCTAGGATATGCCCTCCTGGTGACTCGGGGGCTGTCTCAGACG 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 ACTAGCCCAGGACCCATCTTTCTCACACGGATTTAGTCCCACCCTATGGCCACTGGCCGTATCTGAGGGCTGCT 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 CCCCTTTTAGAATTTACCTCTTATGAGCTCCATGTTGCTTCACTCTATCCAAAGTGTCACTTGGTGCATAAGCA 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 CAGAAATCTGAAAAATGGCCATGTTGTCTTTTTTTTTTTTTTTTAATGCCAAGATTGACAGGTTGGCCGTTTGC 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 TTAATGCCAGAAGTTGGGGGAAAGTTACGCTTTTCTAAGAATAATGGACTCTTAAGGCATTGAGGGCTCTAAAC 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 AGGATTCTTTAATCATGGAGCAAGAGAATTTCAAGGCAGGGGATTTTATCCCCCACCAAAAACACAGTGAAAGG 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 CCTGCTTTTGTGTCCCATTCACATGCCCTCGGTCACTGAGTCTGGAGTGAACCACGGGTTGAGGAAGTCAGGCT 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 GTTGGCGTGTCCCAGCACCACACCACCCCTAAAGTGCCAGGTGATCTCCTGTGGCTCATCGGTGGAAGCAGTGG 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 GGTAGGCTGCTGCCCTGCTGTGGAAGAGGAGCAACAATCAGACATGAGTCCACCCTTTGGAGACCAGGCCTCAG 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 CTCTTGGTGGGCCCAGGGACACCCACACAGGTGGCCATCACAGCCCCATGGACAACACTAATTGTCCACAGCAA 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 AGGGCAAGGAATCCTCTGGGAGCTTCTTCCGTTTCTTCCCCCCAGATACCCATCTTGAAAAACACTATTTCTGG 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 AATGCTTCTGCATCAAAGGAGATTCTTTGAGATAGCCCATCTTCCTGAGCTAGCAAATACAGGAGTTTTCACTT 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 TCTTTAGGAAAGAGAAGCTTTCAGGGGAAGGAGAGAATGATTTTGCTGACTTCCCAAGCCCTGGTGACCAGACC 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 AAGGCAGGGCCCAGCATAATTCCTCCAGTTGGATGAACATTCAAGAGAGCTCGTTCCTACCTGGCTGGAGACCG 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 AGGCCAGAAGGCAAAAACCAGAAAGGGAACAGTCCATAACTTACCTCTGCTTCTGACCGATGGTGTTTGGGAAT 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 AGGTTACTTTGGACTGAGTTTGGGTTCTCTGCTGTCCTAAGAACTTCAGTGTAGAGAAAATAAGACTTCTGGTG 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 CTGCTGGGGTATGTTCTGGGCTTAATTCCCCCAAGCAGAAGACCAGATCCAAGATGTTTGGACACCCTGTCAGA 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 CGTTGGTCCCAAGTTTAATTAGATTTCTGAATCTCGTTGAGGCCAAGGAATGATCCATACTGAAAAAATGCTGA 3478
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3479 GCCAGCCATCTTTGGCAAAGGTCCCTGAGCTCTTGCTATCTCTCAAGAGTGCTGAGAACCACGGTGAAAGTGCT 3552
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3553 GCTCTAGGCCCACAAGTGTAACTATGCTGTTAACAGCTGTCAATAGATAATTAAAATTCATACTGTATGAAAAT 3626
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3627 CACTTTTGTTAAATGACTGTTTAAGCCCATTCAACAACATATATCAGAATCCCCTACTACCGCTAGTATTTGCC 3700
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3701 AAAAAAGAAAAGAAACCCACCCTAAGGGAAGCATTGGTAACAATCGTTGTTATAAACATGGCTTGGGTATCACA 3774
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3775 TCTCTCCATCTTGCCATCTCTTACCTGTAAGAACGGTGACTATTACAACAGTGACTATTATTATATCCAAATAA 3848
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3849 TCTCAGCATTTGCTGGAGTTTGAACCAGAGCTGAATACATGGAATTTTAATGTAGAAATTTAGGCAAAACTCCA 3922
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3923 AGCCATTTTTTCTTCTCCTCTGGCCAAAACGTTATTTCCTCAAACAGGGAAATATGAGTCTCTATGGGGCCAGG 3996
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3997 TTATAGGAGCAAATGTGAACAACCTGAGAATCTGAAGGTTGTTGAGAGGACCAAGAGTGCATTGACTCTACAAT 4070
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4071 AAATCTCACTCATTGGTTCGGAGCAGGCTTAGGGTTAACTGCATTTTAACAGGTCTTCTCAGGTAGCCGGTAGT 4144
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4145 TGCGAGAGAAACCTGGACCATCCCTTTTGGTCACCTACCAGTGCCCAGGAAGTCTCTGCTATCAGGTTTTTGCT 4218
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4219 TGTGTGTAACTTCAGTCTTTCCTTGGGCTGGTGTAAATCCTTTTCTCCTGAGGGACCCAGCCTACTTTTTTTTT 4292
Query 1 -------------ATGGAGTCTTGCTC-TGTCACCCAGGCTGGAGTGCAATGGCGCGATCTCCACTCACTGCAA 60
|||||||.|||||| |||..|||||||||||||||||||||..||||||..||||||||||
Sbjct 4293 TTTTTTTTCAAATATGGAGTTTTGCTCTTGTTGCCCAGGCTGGAGTGCAATGGCATGATCTCAGCTCACTGCAA 4366
Query 61 CCTCTGCGTACCAGGTTCAAGCGATTCTCCTGTCTCAGCCTCCTGAGTAGCTGGGATTACAGG----TGCCCAC 130
||||.||.|.|..||||||||.||||||||||.||||||||||..|.|||||||||||||||| || |
Sbjct 4367 CCTCCGCCTCCTGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCTACTAGCTGGGATTACAGGCGTTTG----C 4436
Query 131 CACCACAGCTGGCTAATTTTTGTATTTTTAGTAGAGACTG-GGTTTTACCATATTGGCCAGACTGGTCTCGAAC 203
||||||..|.||||||||||||||||||||.|||||| || |.|||.|||||.||||||||.||||||||||||
Sbjct 4437 CACCACGCCCGGCTAATTTTTGTATTTTTATTAGAGA-TGAGATTTCACCATGTTGGCCAGGCTGGTCTCGAAC 4509
Query 204 TCCTGACCTCAGGTGGTCCGCCTGCCTTGGCTTCCCAAAGTGCTGGGATTATAGGAGTGAGCCACTGCGCCTGG 277
|||||.|||.|||||.||.|||.||||||||.|||||||||||||||||||||||||||||||| |||||
Sbjct 4510 TCCTGTCCTTAGGTGATCTGCCCGCCTTGGCCTCCCAAAGTGCTGGGATTATAGGAGTGAGCCA-----CCTGG 4578
Query 278 CC-------ATT-------------------------------------------------------------- 282
|| .||
Sbjct 4579 CCCAGCTAGCTTTTAAAGTTCTGCCAGCATAGCCCCGGGATGGGGTGGGGGTAGACAGGGCCTTAGGACTTTCA 4652
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4653 TTTTTAAAATGCTCACTCCACGGTGAAGAAACAGGTGATGACTATCCTGAATATTTGGGAAGCTGTGTCCTAGA 4726
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4727 ATTTTTGGCCTCAGTTCCAGAACCCACAGCTTCTTTACAACATGCTTCAAGCCTGGGACTGAGCTGCCAGTAAA 4800
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4801 TAAACCCCTAGTAACCTTAATATGGGTTAATAAGATTAGGTGCCCGCTCTGCACGCTCCCCTGCCCCTCCTCGT 4874
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4875 CCGGGCACCTGTTACACTAGGCCAGCATGTTTGCAGCTTAGCCAGGGAAAATCGTGGACCAAGACAGGGCTTTT 4948
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4949 CATCCACGACTGGCTAAAAAGATGGCTCTCAATGACAGCGCAGGCAGGCAGCACCACTGTGTTAGGAAGAGAAA 5022
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5023 AGTGTCTGTCCAATACTATGAAAGTCCAGGGAAGAGACAAGTGCCTTCCCAGGTCACAATGGATAGATTGGCTG 5096
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5097 GAAGGGGAAAAACATGTCAGTTCTTAACTCCTGACAGCATTTTATCCTGTCCATCACAGAGGACTGTAAACAGC 5170
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5171 AAAGTTACAGATTAGAGAATGCTGAGCTCTCAGGATGGCATCAAATGGAGGATTAAGATGTAAGGGACAACTTC 5244
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5245 TAGCTATTTACCTGAGGGAAGTGAAAATTCAGGTTTGTACAAAAACCCATCCATGAATGTTTGTAGCAGTAATC 5318
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5319 ACCAAAACAATCACCCAAACTCACCCAAATGCCCTTCATCTGGCAACTGCCCAGAAGTCTGTACAACGGAATGC 5392
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5393 TACTCAGCAATCCAAAGGAACAGGGAGGACCCGAATGCATTCTTCTTTAGTGAGAAGCCAGACTCAAAATGCTA 5466
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5467 CATATGATACAATTCCATTTATATAACATTCGGGAAGAGACAAAACAAAGGGAGAGAAAAACACTGGTAGCTGA 5540
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5541 AAGCCAGGATGAGGCAAGAAGCTGACTACAAAGGGGACTTTTGGGGAAGATGGAATTGTTCTATTTCTCGATTG 5614
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5615 TGGTTGTTTAACTGTATGCATTTGTTAAAATGTATAAAACTGTACACTAAAAAGAGTTAATCTGTTTGTAAAAT 5688
Query 283 -------------------------- 282
Sbjct 5689 ATACCTCAATAAATGTGACTTAAAAA 5714
