Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_13781
- Subject:
- XR_944894.2
- Aligned Length:
- 3705
- Identities:
- 245
- Gaps:
- 3423
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CGCACCTTGCTGCCTCCCTCTTGCAGCTCTCTGACGATGCAGCGACCGCGGCTGGCGGAGATTGAGCAACGGGG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AAAGGCGGGAGGCACCTCCCCTCTTCCGGATCCAGCACCCGCAGACCTGGTCAGCCCTTCCTGAGATCTGCCCT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GTGGAGCTCTGCTTTGGGGACTGGGTGTGAGGTGAACCAGAAGGATTTGCTGAGCACCGAGAAAGCACCGGCCT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AGGCGCAAAGAGCCGGGGGCCAGCTCTTGGAGGGCCTGGAGACCCCACGTGGTCCCGACCGAAGGACCTGTGGA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CATCCAAAGGTGATACAGCTGGAAAAAGGATCTTCATCCAAGACAAAGAGAAACAAAGTCGATAGGAAAGTGAT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GAAAGGCATCAAGCAAAGTGAAGATGCAAATGAGAAAACAAGATCAGAAGACAGGAATATCTGAAACAAGTCAC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 AAATGCATAGTATGACCTCTCAGGTAAGGACCAGGGCTGGATCATCCCAGGATGTTCAAGGCATACTCTCAGGG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GGCGCTGTGTTATACTGAGATCTTGCTAGGCAAAAACATGGTTTTTGTCTTTTCTGTTGAAAAGGTACCTTTTG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GGAGGCCAGGCGCGGTGGCTTACTCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCGGATCACCTGAGGT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 AGGGAGTTCAAGACCAGCCTGACCAACATGGAGAAACCCCTTCTCTACTAAAAATACAAAATTAGCCAGGTGTG 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 GTGGCACATGCCTGTAATGCCAGCTACTTGGGAGGCTGAGGCAGGAGAATCGTTTAAACTCAGGAGGTGGAGGT 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 GGCGGTGAGCCGAGATCATGCCATTGCACTCCAGCTTGAGCAAAAAGAGCAAAATTCCGTCTCAAAAAAAAAAA 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 AAAAAAAGAAAGAGAAAGAAAGAAAAAGAAAAGAAAAGGTACCTTTTGGGAAGAAGCATTAAAAAAATTTTTTT 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 TTTCCGCTGGCAGTATTTAGGAAGAAGAATTCTATTTATTACTTCAGTAGAGTAACATGCTTTACTAAAATAAG 1036
Query 1 ------------------------------------ATGGAGTCTTGCTCTGTCACCCAGGCTGGAGTGCAATG 38
|..||||||..||||||..||||||||||||||||.||
Sbjct 1037 CTTCCATTCTACATGGTTTTTTTTTTTTTTTTTTAGACAGAGTCTCACTCTGTTGCCCAGGCTGGAGTGCAGTG 1110
Query 39 GCGCGATCTCCACTCACTGCAACCTCTGCGTACCAGGTTCAAGCGATTCTCCTGTCTCAGCCTCCTGAGTAGCT 112
|.||||||||..|||||||||||||||||.|.|..|||||.||.|.||||||||.||||||||||.||||||||
Sbjct 1111 GTGCGATCTCGGCTCACTGCAACCTCTGCCTCCTGGGTTCGAGTGTTTCTCCTGCCTCAGCCTCCCGAGTAGCT 1184
Query 113 GGGATTACAGGTGCCCACCACCACAGCTGGCTAATTTTTGTATTTTTAGTAGAGACTGGG-TTTTACCATATTG 185
||||.||||||.|..||||||||||.|.||||||||||||||.|||||||||||||.||| |||.|||||||||
Sbjct 1185 GGGACTACAGGAGTACACCACCACACCCGGCTAATTTTTGTAATTTTAGTAGAGACGGGGATTTCACCATATTG 1258
Query 186 GCCAGACTGGTCTCGAACTCCTGACCTCAGGTGGTCCGCCTGCCTTGGCTTCCCAAAGTGCTGGGATTATAGGA 259
|.|||.|||||||||||||||||||||||||||.|||.|||||||||||.|||||||||||||||||||.|||.
Sbjct 1259 GTCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCCACCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGC 1332
Query 260 GTGAGCCACTGCGCCTGGCC----ATT----------------------------------------------- 282
.|||.||||||||||||||| |||
Sbjct 1333 ATGAACCACTGCGCCTGGCCCATGATTGTTCTTAAAATAAGAAACACCACATAATATTCAGTGTTCCTTATTTT 1406
Query 283 -------------------------------------------------------------------------- 282
Sbjct 1407 GAAGGGCTCTTTATTTGGTTATATTTTAGGCATATGAAGCTATTTCATAATCCCAAAAGGGGTATTTAATGAGA 1480
Query 283 -------------------------------------------------------------------------- 282
Sbjct 1481 TTTAGAATTGATAGTCTTCTGTTGATATATATTTATAGTTATTTATACACATATTTGTATGTTCTTAAAATAAA 1554
Query 283 -------------------------------------------------------------------------- 282
Sbjct 1555 ATGTTCAAAGTTTTTGATTCAAATGTAACATGTCTAAAATTGAAATCATTGTTTTTTTGTTTTTTTTTTTTCAC 1628
Query 283 -------------------------------------------------------------------------- 282
Sbjct 1629 AACTCAAACCCTCTTCTTTTCCCATAAACACCATATTGGGAAATGGCACCACCATGGGCATAGTTGCTCAAGCT 1702
Query 283 -------------------------------------------------------------------------- 282
Sbjct 1703 AGAAGGATGGGGGTATTTTGGCTCATCCCCTTCACTCTTCACATCTAATTAATTCCCTCTTTTGAGTAACATTT 1776
Query 283 -------------------------------------------------------------------------- 282
Sbjct 1777 ACTAAGTGCCAGGCCTTCTGCTAGTCTTTCGTGAAGCTTGGAGTTAGAGTGAGAGACCGATATTACTCAAATGA 1850
Query 283 -------------------------------------------------------------------------- 282
Sbjct 1851 TCTTGCCAGTGAATGTACAAGTTACAGGTGGAGATAAGTGCTCTGCAGAAAGGAGCATGACTCTTGTGAGAGAA 1924
Query 283 -------------------------------------------------------------------------- 282
Sbjct 1925 ACAGAAGACCATGTTCTGAACTGGGAATCAAGGAAGACTTCCCTGAGGACGTGACCCTTGTTTGGACTCTATTC 1998
Query 283 -------------------------------------------------------------------------- 282
Sbjct 1999 TGTTTATGCTAAGGATTTTAATAAGGAGCAGGTGATGGACATGATCCAGCGTACATTTTTAGAGGAATATCATG 2072
Query 283 -------------------------------------------------------------------------- 282
Sbjct 2073 AGTCCTATCACTTCATCTCCTAAATATTTCTGACATCTGTTCTCTTTCCTCCATCCTCACGACCTTCACTGGCA 2146
Query 283 -------------------------------------------------------------------------- 282
Sbjct 2147 TGGGCCTCCAACAGCTCACTGTGGGGGAAGTTTCCCTCAAAGGGCACTGATAACACATCTTATTAAAACTATAC 2220
Query 283 -------------------------------------------------------------------------- 282
Sbjct 2221 CACATCATTATACCTCCCCAACATAATATGTACATGTATGTATTTGACAATAATATATATGTATTACTGTCCTA 2294
Query 283 -------------------------------------------------------------------------- 282
Sbjct 2295 TTTATTATATACATTAAAAACATTCACAAAAAATTAAAAATCCAAATGGTAAGATTTTACATTTTTGATTTGAT 2368
Query 283 -------------------------------------------------------------------------- 282
Sbjct 2369 AACAATACTTTATTATATTACTAAACATATATTCCTAATTGTCACTAAGATATTATCATGTTAGAGAAATTTGC 2442
Query 283 -------------------------------------------------------------------------- 282
Sbjct 2443 TTCACTATACTATATCATTTTTTTAAATCTTAGTTTAATACTCTCTGATACAGCAATTCACAAGTCTACTTCCA 2516
Query 283 -------------------------------------------------------------------------- 282
Sbjct 2517 ACTCTGGCTTATTTTGATTCTTTCATGTAATGGCTGTCATAGCTGAAAAGGGACCTCACAGAGACCCAATGGAG 2590
Query 283 -------------------------------------------------------------------------- 282
Sbjct 2591 GCAGTGTCCTATTGGCTATACTTCCCAAATCAAGCCATTCATTTCTCAATCCCATTCACTAATTTACAGAGATT 2664
Query 283 -------------------------------------------------------------------------- 282
Sbjct 2665 TACTTATTTTTCATTGCTAGTCTGCAAATGTACACTTAAATGAAGGTCATCCTTAATAATTATGAATGTGAACC 2738
Query 283 -------------------------------------------------------------------------- 282
Sbjct 2739 CATGAAACCTACTTCATAATTCTGAATTTGTTTTGACAGATTCTTTTCCACAGTTAGAGGGCCATTGCTATACC 2812
Query 283 -------------------------------------------------------------------------- 282
Sbjct 2813 TGACATTGTGGCTGACAAAAGAGCTCTTATTAGGACTGGAAGTGTCAGTTCTACTTTTTCTTCTTTCTTTATGC 2886
Query 283 -------------------------------------------------------------------------- 282
Sbjct 2887 TCATGTTATTATTATTTTTTAAATCTGAAGTTTAGAGGAATCTTTTAACTCTACTTGTCTATTTGGGAAGACAC 2960
Query 283 -------------------------------------------------------------------------- 282
Sbjct 2961 ACTAAACTAGATAATATAATTTATAAATTCCCTCAACTAAGCACACAGAACTGTAATACATTGAAATCTGCCAA 3034
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3035 AGAGAACAAATCAGTGAGGGCACGACTGTATTCCTTTGTGTCTTTTTCAAGACACCTTGAGTACTGTAAGTGAC 3108
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3109 AGGGAGCCATCTGATGTACAGGCTGAAGGGGGCCACCATCAACCTAGTAACCTAAACAGAAGTTCCAATATTTT 3182
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3183 CACCCTGCAGTCCACTTTGTAACCTTTTCTTAGCCTTCCACAAGAGTCTCCTAACTGGACTCCCTCCATCCACT 3256
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3257 TCTGGGCACCTAATGTCTCTACTACAGATTAGAAATTACTTTCACAGAAGGCCATTTCTGAAACCCAAACTAGC 3330
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3331 TTATGTGTTACCCTACATTGAAATTATTCAGACGCTGTCTTCCCCAGTAATCTGCAAGTTTCACAAAGGTAGAT 3404
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3405 GCCATGTTCTTAATGGTTTCCCAGCACATAGCACATAACAGAAGCTCAATAAATATTTGTTGAATGAATAAATG 3478
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3479 AGTAAACAGAATATTTTTACAGTTAAATACCTTTAATTCTTTTATTTTTTTTAAATTTCAAGTCCTTAGAGGAG 3552
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3553 GAAGAATTGAAAAAATATGAAATATCAAATATACATTTAGCTAAATTTTTAAAGTTTAGTAGGCTATATGCATA 3626
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3627 AATCAAATGAATAGCAATATTTGGAACTGTAACTATTTTTGGAATCTTGTATGAATAAATTACAAGTTTAAAAC 3700
Query 283 ----- 282
Sbjct 3701 ATCAA 3705
