Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_13795
- Subject:
- NM_173084.3
- Aligned Length:
- 2869
- Identities:
- 1138
- Gaps:
- 1685
Alignment
Query 1 ATGCACAATTTTGAGGAAGAGTTAACTTGTCCCATATGTTATAGTATTTTTGAAGATCCTCGTGTACTGCCATG 74
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGCACAATTTTGAGGAAGAGTTAACTTGTCCCATATGTTATAGTATTTTTGAAGATCCTCGTGTACTGCCATG 74
Query 75 CTCTCATACATTTTGTAGAAATTGTTTGGAAAACATTCTTCAGGCATCTGGTAACTTTTATATATGGAGACCTT 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 CTCTCATACATTTTGTAGAAATTGTTTGGAAAACATTCTTCAGGCATCTGGTAACTTTTATATATGGAGACCTT 148
Query 149 TACGAATTCCACTCAAGTGCCCTAATTGCAGAAGTATTACTGAAATTGCTCCAACTGGCATTGAATCTTTACCT 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 TACGAATTCCACTCAAGTGCCCTAATTGCAGAAGTATTACTGAAATTGCTCCAACTGGCATTGAATCTTTACCT 222
Query 223 GTTAATTTTGCACTAAGGGCTATTATTGAAAAGTACCAGCAAGAAGACCATCCAGATATTGTCACCTGCCCTGA 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 GTTAATTTTGCACTAAGGGCTATTATTGAAAAGTACCAGCAAGAAGACCATCCAGATATTGTCACCTGCCCTGA 296
Query 297 ACATTACAGGCAACCATTAAATGTTTACTGTCTATTAGATAAAAAATTAGTTTGTGGTCATTGCCTTACCATAG 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 ACATTACAGGCAACCATTAAATGTTTACTGTCTATTAGATAAAAAATTAGTTTGTGGTCATTGCCTTACCATAG 370
Query 371 GTCAACATCATGGTCATCCTATAGATGACCTTCAAAGTGCCTATTTGAAAGAAAAGGACACTCCTCAAAAACTG 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 GTCAACATCATGGTCATCCTATAGATGACCTTCAAAGTGCCTATTTGAAAGAAAAGGACACTCCTCAAAAACTG 444
Query 445 CTTGAACAGTTGACTGACACACACTGGACAGATCTTACCCATCTTATTGAAAAGCCGAAAGAACAAAAATCTCA 518
|||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||
Sbjct 445 CTTGAACAGTTGACTGACACACACTGGACAGATCTTACCCATCTTATTGAAAAGCTGAAAGAACAAAAATCTCA 518
Query 519 TTCTGAGAAAATGATCCAAGGCGATAAGGAAGCTGTTCTCCAGTATTTTAAGGAGCTTAATGATACATTAGAAC 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 TTCTGAGAAAATGATCCAAGGCGATAAGGAAGCTGTTCTCCAGTATTTTAAGGAGCTTAATGATACATTAGAAC 592
Query 593 AGAAAAAAAAAAGTTTCCTAACGGCTCTCTGTGATGTTGGCAATCTAATTAATCAAGAATATACTCCACAAATT 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 AGAAAAAAAAAAGTTTCCTAACGGCTCTCTGTGATGTTGGCAATCTAATTAATCAAGAATATACTCCACAAATT 666
Query 667 GAAAGAATGAAGGAAATACGAGAGCAGCAGCTTGAATTAATGGCACTGACAATATCTTTACAAGAAGAGTCTCC 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 GAAAGAATGAAGGAAATACGAGAGCAGCAGCTTGAATTAATGGCACTGACAATATCTTTACAAGAAGAGTCTCC 740
Query 741 ACTTAAATTTCTTGAAAAAGTTGATGATGTACGCCAGCATGTACAGATCTTGAAACAAAGACCACTTCCTGAGG 814
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 ACTTAAATTTCTTGAAAAAGTTGATGATGTACGCCAGCATGTACAGATCTTGAAACAAAGACCACTTCCTGAGG 814
Query 815 TTCAACCCGTTGAAATTTATCCTCGAGTAAGCAAAATATTGAAAGAAGAATGGAGCAGAACAGAAATTGGACAA 888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 TTCAACCCGTTGAAATTTATCCTCGAGTAAGCAAAATATTGAAAGAAGAATGGAGCAGAACAGAAATTGGACAA 888
Query 889 ATTAAGAACGTTCTCATTCCCAAAATGAAAATTTCTCCAAAAAGGATGTCATGTTCCTGGCCTGGAACACCAGT 962
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.| ||
Sbjct 889 ATTAAGAACGTTCTCATTCCCAAAATGAAAATTTCTCCAAAAAGGATGTCATGTTCCTGGCCTGGTA----AG- 957
Query 963 GTATTCAGTAGCGTGGGGCCCTGATTCAGAAAAGGTTCTTTATACAGCAGGCAAGCAGCTAATCATTAAACCTC 1036
||| ||||||| |||..| |||..|||||..|.
Sbjct 958 ----------------------GAT---GAAAAGG-----------------AAGTTG--AATTTTTAAAAATT 987
Query 1037 TTCAACCAAATGCTAAAGTT-------TTGCAGTGGAAAGCTCATGATGGCATTA----TTTTAAAAGTAGATT 1099
||.||| |.||.|..|||| ||.|||| || |..|||||.|..|| ||||.||
Sbjct 988 TTAAAC--ATTGTTGTAGTTACATTAATTTCAGT--AA---TACTGATGTCGATACTCTTTTTCAA-------- 1046
Query 1100 GGAACTCGGTCAATGATCTTA----TTTTATCTGCTGGTGAA--GACTGTAAATATAAGGTATGGGATAGTTAC 1167
..|||.| |||.|| ||||| .||||| .|||.||| |||| |||
Sbjct 1047 CCAACAC--------ATCATAACCTTTTTA------AGTGAAATCACTTTAA--------TATG-----GTT-- 1091
Query 1168 GGCCGCCCACTGTACAATTCACAACCTCATGAGCATCCCATTACTTCAGTTGCCTGGGCTCCAGATGGAGAATT 1241
|||.|..|||| ||| |
Sbjct 1092 --------------------------------------------TTCTGAAGCCT---CTC------------T 1106
Query 1242 ATTTGCTGTTGGATCGTTTCATACTTTA-CGCTTGTGTGATAAAACTGGGTGGTCATATGCATTAGAAAAACCC 1314
|| ||||| |..||.|.|||| | |||.| ||| |||||.||..||
Sbjct 1107 AT---CTGTT------TACCAAAGTTTATC----------TAACA-------GTC---TGCATAAGGTAA---- 1147
Query 1315 AACACTGGCAGCATATTTAATATTG-----CATGGTCTATCGATGGCACTCAGATTGCTGGAGCCTGTGGAAAT 1383
||.|| |||.|| |||..||||| |||.||.| ||||
Sbjct 1148 ---------AGAAT-----ATACTGTGTCACATTTTCTAT--------------TTGTTGAA------GGAA-- 1185
Query 1384 GGACATGTCGTTTTTGCACATGTGGTGGAACAACATTGGGAGTGGAAAAAT--TTTCAAGTAACATTAACGAAA 1455
|||| ||||| ||||| |||| .|||
Sbjct 1186 ------------TTTG----TGTGG---------------------AAAATAGTTTC-----CCAT-------- 1209
Query 1456 AGAAGAGCCATGCAGGTTCGTAATGTTCTTAATGATGCAGTGGATTTACTGGAATTCCGTGATAGAGTCATTAA 1529
Sbjct 1210 -------------------------------------------------------------------------- 1209
Query 1530 AGCATCTTTGAACTATGCACACTTAGTTGTTTCAACGTCTCTTCAATGTTACGTGTTCTCCACGAAGAACTGGA 1603
Sbjct 1210 -------------------------------------------------------------------------- 1209
Query 1604 ACACACCAATTATATTTGATCTCAAAGAAGGAACTGTTAGTTTGATTCTGCAGGCAGAAAGACATTTTCTTCTT 1677
Sbjct 1210 -------------------------------------------------------------------------- 1209
Query 1678 GTAGATGGTAGTAGTATCTATTTATATTCATATGAAGGGCGCTTTATTTCATCTCCAAAATTTCCTGGAATGAG 1751
Sbjct 1210 -------------------------------------------------------------------------- 1209
Query 1752 AACAGATATTCTGAATGCACAGACTGTGTCTTTGAGTAATGATACCATAGCAATAAGAGACAAAGCTGATGAAA 1825
Sbjct 1210 -------------------------------------------------------------------------- 1209
Query 1826 AAATAATCTTCCTCTTTGAGGCATCAACCGGAAAGCCGTTAGGTGATGGAAAGTTTCTTTCTCATAAGAATGAA 1899
Sbjct 1210 -------------------------------------------------------------------------- 1209
Query 1900 ATCTTGGAAATTGCTCTGGATCAAAAAGGACTTACCAATGATAGAAAAATTGCTTTCATTGATAAAAATAGAGA 1973
Sbjct 1210 -------------------------------------------------------------------------- 1209
Query 1974 TCTCTGTATCACTTCTGTGAAACGATTTGGGAAGGAAGAACAAATTATCAAGCTTGGAACAATGGTGCATACTT 2047
Sbjct 1210 -------------------------------------------------------------------------- 1209
Query 2048 TGGCATGGAACGATACATGCAATATCCTTTGTGGACTTCAAGATACTCGATTTATAGTGTGGTATTACCCCAAT 2121
Sbjct 1210 -------------------------------------------------------------------------- 1209
Query 2122 ACAGTTTATGTGGACAGAGACATTTTGCCTAAAACATTATATGAAAGGGATGCAAGTGAATTTAGTAAAAATCC 2195
Sbjct 1210 -------------------------------------------------------------------------- 1209
Query 2196 CCATATTGTGAGTTTTGTTGGAAATCAAGTAACTATTAGAAGAGCTGATGGCTCCCTGGTTCACATCAGCATAA 2269
Sbjct 1210 -------------------------------------------------------------------------- 1209
Query 2270 CACCATATCCTGCTATTCTCCATGAATATGTAAGCAGTTCAAAATGGGAAGATGCTGTGAGACTTTGTCGCTTT 2343
Sbjct 1210 -------------------------------------------------------------------------- 1209
Query 2344 GTTAAGGAGCAAACCATGTGGGCTTGTCTAGCTGCTATGGCAGTTGCTAATCGAGATATGACTACTGCAGAAGT 2417
Sbjct 1210 -------------------------------------------------------------------------- 1209
Query 2418 AGCCTATGCAGCAATTGGTGAAATTGATAAGGTTCAGTACATCAATTCTATAAAAAATCTTCCATCTAAAGAAT 2491
Sbjct 1210 -------------------------------------------------------------------------- 1209
Query 2492 CAAAAATGGCCCACATACTACTGTTTAGTGGGAACATACAGGAGGCTGAAATAGTACTTCTTCAGGCTGGCCTT 2565
Sbjct 1210 -------------------------------------------------------------------------- 1209
Query 2566 GTTTATCAAGCAATCCAGATCAATATTAATCTCTACAACTGGGAAAGGGCACTGGAATTGGCTGTAAAATACAA 2639
Sbjct 1210 -------------------------------------------------------------------------- 1209
Query 2640 AACACATGTTGATACAGTTCTTGCTTACCGTCAAAAGTTTTTGGAGACATTTGGTAAACAGGAAACTAATAAAC 2713
Sbjct 1210 -------------------------------------------------------------------------- 1209
Query 2714 GATACTTGCATTATGCAGAAGGTCTCCAAATAGATTGGGAGAAAATCAAAGCCAAAATTGAGATGGAAATTACA 2787
Sbjct 1210 -------------------------------------------------------------------------- 1209
Query 2788 AAAGAAAGAGAGCAATCATCAAGCAGCCAATCCAGCAAGAGTATAGGTTTAAAGCCC 2844
Sbjct 1210 --------------------------------------------------------- 1209
