Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_13844
- Subject:
- NR_158991.1
- Aligned Length:
- 6260
- Identities:
- 819
- Gaps:
- 5441
Alignment
Query 1 --------------------------------ATGGGCATCCTCAGCGTAGACTTGCTGATCACACTGCAAATT 42
||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GCACAAGGGAACTGACTCAGGAGGCAGAGAAGATGGGCATCCTCAGCGTAGACTTGCTGATCACACTGCAAATT 74
Query 43 CTGCCAGTTTTTTTCTCCAACTGCCTCTTCCTGGCTCTCTATGACTCGGTCATTCTGCTCAAGCACGTGGTGCT 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 CTGCCAGTTTTTTTCTCCAACTGCCTCTTCCTGGCTCTCTATGACTCGGTCATTCTGCTCAAGCACGTGGTGCT 148
Query 117 GCTGTTGAGCCGCTCCAAGTCCACTCGCGGAGAGTGGCGGCGCATGCTGACCTCAGAGGGACTGCGCTGCGTCT 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 GCTGTTGAGCCGCTCCAAGTCCACTCGCGGAGAGTGGCGGCGCATGCTGACCTCAGAGGGACTGCGCTGCGTCT 222
Query 191 GGAAGAGCTTCCTCCTCGATGCCTACAAA--------------------------------------------- 219
|||||||||||||||||||||||||||||
Sbjct 223 GGAAGAGCTTCCTCCTCGATGCCTACAAACAGCTAAATTGTCCTCCATCAGGTTTTAGCAAAGATGGACACATT 296
Query 220 -------------------------------------------------------------------------- 219
Sbjct 297 TTATGACTAGTATATGAAGCTTATAAAAGCAGACTACTGGTCTACTCACATTTGGATTTATGGATGACTGACAG 370
Query 220 -------------------------------------------------------------------------- 219
Sbjct 371 TGTTGTACTTACTCTAAATTTCCCAAGGCAAATTAGTCTGTGTTTTGGAAAGAATTCTGCAGCTGAACTATACA 444
Query 220 -------------------------------------------------CAGGTGAAATTGGGTGAGGATGCCC 244
|||||||||||||||||||||||||
Sbjct 445 TTGTTTCTAAGAAGGAGAAGGTGCCTTAACTTTCCAAGAAAATTTACTGCAGGTGAAATTGGGTGAGGATGCCC 518
Query 245 CCAATTCCAGTGTGGTGCATGTCTCCAGTACAGAAGGAGGTGACAACAGTGGCAATGGTACCCAGGAGAAGATA 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 CCAATTCCAGTGTGGTGCATGTCTCCAGTACAGAAGGAGGTGACAACAGTGGCAATGGTACCCAGGAGAAGATA 592
Query 319 GCTGAGGGAGCCACATGCCACCTTCTTGACTTTGCCAGCCCTGAGCGCCCACTAGTGGTCAACTTTGGCTCAGC 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 GCTGAGGGAGCCACATGCCACCTTCTTGACTTTGCCAGCCCTGAGCGCCCACTAGTGGTCAACTTTGGCTCAGC 666
Query 393 CACTTGACCTCCTTTCACGAGCCAGCTGCCAGCCTTCCGCAAACTGGTGGAAGAGTTCTCCATCAGTGGCTGAC 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 667 CACTTGACCTCCTTTCACGAGCCAGCTGCCAGCCTTCCGCAAACTGGTGGAAGAGTTCTCC-TCAGTGGCTGAC 739
Query 467 TTCCTGCTGGTCTACATTGATGAGGCTCATCCATCAGATGGCTGGGCGATACCGGGGGACTCCTCTTTGTCTTT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 740 TTCCTGCTGGTCTACATTGATGAGGCTCATCCATCAGATGGCTGGGCGATACCGGGGGACTCCTCTTTGTCTTT 813
Query 541 TGAGGTGAAGAAGCACCAGAACCAGGAAGATCGATGTGCAGCAGCCCAGCAGCTTCTGGAGCGTTTCTCCTTGC 614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 814 TGAGGTGAAGAAGCACCAGAACCAGGAAGATCGATGTGCAGCAGCCCAGCAGCTTCTGGAGCGTTTCTCCTTGC 887
Query 615 CGCCCCAGTGCCGAGTTGTGGCTGACCGCATGGACAATAACGCCAACATAGCTTACGGGGTAGCCTTTGAACGT 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 888 CGCCCCAGTGCCGAGTTGTGGCTGACCGCATGGACAATAACGCCAACATAGCTTACGGGGTAGCCTTTGAACGT 961
Query 689 GTGTGCATTGTGCAGAGACAGAAAATTGCTTATCTGGGAGGAAAGGGCCCCTTCTCCTACAACCTTCAAGAAGT 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 962 GTGTGCATTGTGCAGAGACAGAAAATTGCTTATCTGGGAGGAAAGGGCCCCTTCTCCTACAACCTTCAAGAAGT 1035
Query 763 CCGGCATTGGCTGGAGAAGAATTTCAGCAAGAGATGAAAGAAAACTAGATTAGCTGGT---------------- 820
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1036 CCGGCATTGGCTGGAGAAGAATTTCAGCAAGAGATGAAAGAAAACTAGATTAGCTGGTTAAAGGTATGATTATA 1109
Query 821 -------------------------------------------------------------------------- 820
Sbjct 1110 AGAGAGCTTATTGTTTTAAAAAGTTATATAAAGGCAAGGAAATTAAGAACTGAATCCATATTTCAACAGAGCCC 1183
Query 821 -------------------------------------------------------------------------- 820
Sbjct 1184 TATTGGCTTACTGAAAGACAGGAGTTTATCTATCGGAAGAACATGAATCTCTAACAGCTCCATACTTCTTTCAC 1257
Query 821 -------------------------------------------------------------------------- 820
Sbjct 1258 TACTCAAATGGCATTGGGCTGAGTAAGTAACCATATCACCTCTCTTCTTAGTAAAAAGCCCTATGTGAAAAGAT 1331
Query 821 -------------------------------------------------------------------------- 820
Sbjct 1332 CCCAAGATGGAGAGGAAGAAACGCTAATTCAGCATGTGTTCATTCTGCATTGAGAAGGAACTGATACATCTGAT 1405
Query 821 -------------------------------------------------------------------------- 820
Sbjct 1406 GCATGCTTTGAGACCAGAAGAAAAGACTTACCTGAATAATTACTACATTAGGGAAGCTACTGTCTACGTTAAGA 1479
Query 821 -------------------------------------------------------------------------- 820
Sbjct 1480 TAAAGGGTATTGCCTTGGCTCTATTTGGCATGGATGGAGCCCAGTTGGAAAATTCCCAAATATTACAACAAGTC 1553
Query 821 -------------------------------------------------------------------------- 820
Sbjct 1554 CTTGAACCCAGGCCATGTGGTTAGACGTTGGTGTTAAGGTTAGACCTTATGTTAGAGTCATTTCTGATGTTCCA 1627
Query 821 -------------------------------------------------------------------------- 820
Sbjct 1628 GCTTCTAGCCATGTAGTGCTCTCAGTCTTCATACCCCAGAAATTATTGGTATATTTGTAGATACCGAGAATGAT 1701
Query 821 -------------------------------------------------------------------------- 820
Sbjct 1702 CCCTCAGTCTGAGAGGTTAGAATGATCATCTGTAATCTGAGGGTTAATTTCTAGGCAGGTGGAGAGAGTGGTAA 1775
Query 821 -------------------------------------------------------------------------- 820
Sbjct 1776 AAAAGAAATGAAATTGACAAGCTAGGAAAGAGGAGGCAGAAAGATTTGGAAAATTCACAGAGTTTCACCCTTAA 1849
Query 821 -------------------------------------------------------------------------- 820
Sbjct 1850 GCTGTAGAGAGTGGGTCACATTTGTTAGCCACGGAAACATAGAAACATACACAAGGCCAGAAAAAGAAGAAGGA 1923
Query 821 -------------------------------------------------------------------------- 820
Sbjct 1924 GCTCAACTAAAAGTGGCATAGAGAATACACATATAAAAACAATATATTTGTCATATGCTCCTAGAGAGGAGAAA 1997
Query 821 -------------------------------------------------------------------------- 820
Sbjct 1998 GGGGTGATTGAAAGAAAAAAAAATACTTAAATATTTGTAATTGTGAGGGGTTTCTTTTGGAAATAATTACTTTT 2071
Query 821 -------------------------------------------------------------------------- 820
Sbjct 2072 GAACCATGTATGTGGTATGTATATTTTCAGTGGGTTAATTATACCCCATGATACCTATTAAAGGAAAACCAGTG 2145
Query 821 -------------------------------------------------------------------------- 820
Sbjct 2146 GGTCTGGTGGTGCTGGTCTTTTCCTCCCCATTCCTACAATTTCTATGTGGCCCAAGTCATTCCTAATCTTGGTC 2219
Query 821 -------------------------------------------------------------------------- 820
Sbjct 2220 TCTATAGCAGTGTTCTCTCTGAATGCTGAGCTGAAGAAATTATACGTACATACACACATACATACATACATACA 2293
Query 821 -------------------------------------------------------------------------- 820
Sbjct 2294 AATATATGTATATATATTCTCAGCTGCTGCGGGAGGTAGGTACCATGGCCATTCAGCACAGCCTTGATTTCCTC 2367
Query 821 -------------------------------------------------------------------------- 820
Sbjct 2368 CCAAAGTAGGTGAGCTATAGTGAAGAATAGGTGCAAACAAACAAGCTTACTTCCATTGCAAAATAGAAGAAGAG 2441
Query 821 -------------------------------------------------------------------------- 820
Sbjct 2442 GAAGTTAGAGATAATTCTGATCAATCATTTTGGAGGCTTTGTTATAAGGCAACCCCCGGTATATCATGGAATTT 2515
Query 821 -------------------------------------------------------------------------- 820
Sbjct 2516 CCATTGACATTTGAATTTGGACTTGGATCTTCCCTTGGTCCCATTAGCTGAGGTTTAGTAATCTAAAGTCCCTA 2589
Query 821 -------------------------------------------------------------------------- 820
Sbjct 2590 TAGTATATGATTATAATGCTATTTTAAAAAATATATATATAAAATATTTTTTTCTTTTTAAAATAGACACTATA 2663
Query 821 -------------------------------------------------------------------------- 820
Sbjct 2664 GTTTTACCCATAAGTAATATTTAAAGATTATAGCTCCCAAAAGAATGGACCAACCACTTTCGTATCATAATTTC 2737
Query 821 -------------------------------------------------------------------------- 820
Sbjct 2738 TTTTTGGTAAATATGAGACTATTATGAAATCATAGTATATGATTGTATTTAAAGGTACAATCAAAGGATCTTTT 2811
Query 821 -------------------------------------------------------------------------- 820
Sbjct 2812 GTCCATTCCATTAATAACTGAATAAAAAATAAATAAAATGGATAGAAAAAAACTAAAGTTGAAAATACATTCTT 2885
Query 821 -------------------------------------------------------------------------- 820
Sbjct 2886 AAACTAGTTGTCTGAATTGAGAAAAGAGTGAGAACTAGGTGTGCAAGAACCAAACGTATTTTATTTTATTTTTT 2959
Query 821 -------------------------------------------------------------------------- 820
Sbjct 2960 AAATGGGAGCAACATATCAGTCGTGTCACCAGCTGGTATATTGTGTAAATATTAAAGCTCCATTGGGACTGATT 3033
Query 821 -------------------------------------------------------------------------- 820
Sbjct 3034 TTTCATGGCAACATCAGCTTTCTAATGTTCTAAATTCTATAAAAACCACCCACAAAGAAACAAAGCAAATTTCA 3107
Query 821 -------------------------------------------------------------------------- 820
Sbjct 3108 TTATCTAATGAGTTGCTGGAAAATCATATTGAGAATAATTATTTCAGATTCCTCAGTTGTTAACTTCTACATTC 3181
Query 821 -------------------------------------------------------------------------- 820
Sbjct 3182 AAGGCTTATCTCTGCCCCCATTGATTTTTAACCTCAAAATGGTGTTGAGATTTACGTGGAACCCTAAAGCAGTA 3255
Query 821 -------------------------------------------------------------------------- 820
Sbjct 3256 AAATAAAAAACCTGGTTGCAGCACATTCACACTGTTGTCCTTAAAATTCCCCTTTTTTCTCTATGTACGATAAA 3329
Query 821 -------------------------------------------------------------------------- 820
Sbjct 3330 GTAACAGTATGTCAGATAAGCCGGTGGGGGGATGAGATTAGGCTGAGGCAGTGCTAGTCAACTGGGGAAAAGGA 3403
Query 821 -------------------------------------------------------------------------- 820
Sbjct 3404 TGATGGAAAAATCACCCAGTTGTGCTATATTTTTAAAGAAGGAGGTCGTTTATGTGTGCAGACAATTCTCCCTG 3477
Query 821 -------------------------------------------------------------------------- 820
Sbjct 3478 AGGTTAGCCCAATGGAGAAATGAAGCAGAGGAAGGAAACATAGAAAGACATGGGCTATCAGGGAGGAAGATGTT 3551
Query 821 -------------------------------------------------------------------------- 820
Sbjct 3552 CAATAGAACATGCAAGAATTTCTGGAAGAAAGGCTGTGGAAGGGCCAATGGAGAAAATGAATGGACAAAGCTCA 3625
Query 821 -------------------------------------------------------------------------- 820
Sbjct 3626 GGAATCCTACGCTATGTAGAATGTCTTGGTGTTATCAGGGTTAAGCCTGTAATTATGTAACCTATTTATCGCAA 3699
Query 821 -------------------------------------------------------------------------- 820
Sbjct 3700 CATGAATTTTTATGATTTCTTGTGATGTATTCTTTTATGAAATTAACAAGAACTCATTATTTTGAGGTAGAGGA 3773
Query 821 -------------------------------------------------------------------------- 820
Sbjct 3774 AAATCAATGCTTTATCTGATATGCTGAGAAATTATTAGATTGCCAATACTCATGTGCGTTTCATGTGTTTTATA 3847
Query 821 -------------------------------------------------------------------------- 820
Sbjct 3848 AGGTTTGTTCCTTTGAAGAATTGTAGTTCTTAGTCCCACAGGGAAATGTGTATCTATTTATATATCATAGTATA 3921
Query 821 -------------------------------------------------------------------------- 820
Sbjct 3922 AATCTATGATATATTTATATCATATATAAAAGTCTGAGTTCTCTTTCTTAGTCCCTAATCATGTTTCTCCCATA 3995
Query 821 -------------------------------------------------------------------------- 820
Sbjct 3996 GGCTGTGTTTACATGGAGCTATCGGTTTAGCCTTTTAAGCTTCATTAGCTTGTCTATTATTGAAATAGTTTCCA 4069
Query 821 -------------------------------------------------------------------------- 820
Sbjct 4070 AGAAATTTTAGATATTATCATAACATCTGGGTCTACTCAAACACTTATTGTTTGAAAGACTTATGTCTTGGACC 4143
Query 821 -------------------------------------------------------------------------- 820
Sbjct 4144 TATCAAAAACTGACTTTATTTATTGCTTAGTGAAAATACTAGTGGGATCAACAATGATTTTCTTGAATGGGCAT 4217
Query 821 -------------------------------------------------------------------------- 820
Sbjct 4218 GAATGGAGATGCCCGCACAGTAATGTAGAAATGTTTCATACAGCTATTAAAATGTAACTGACCTCCTTAGAGGC 4291
Query 821 -------------------------------------------------------------------------- 820
Sbjct 4292 AGATTAGTAACTGTTCCTACTTTGTATAGCTAAGTGACAGTCACTTAACTTACATGACTTTCTTTTTTCACATT 4365
Query 821 -------------------------------------------------------------------------- 820
Sbjct 4366 GGGTCTCTGGTCCTGTGTCTTCACCTCATTTATAGCACGTCTCCTTGATTTTTGGTAGTATCAACTTCCCAGTG 4439
Query 821 -------------------------------------------------------------------------- 820
Sbjct 4440 ATCTGTTCAGTTAAGTTCTTCTCCCGTTAACCAGGAAGTGCTTATTCTCTCATCACAGTGGGAAGAATAGCCTA 4513
Query 821 -------------------------------------------------------------------------- 820
Sbjct 4514 TTGTCTTTCATTTTGCCTGAGTGTATTTTACTATTTGGGCTCTGAAATAAAAATTATGAAATATGGTGAGGTCA 4587
Query 821 -------------------------------------------------------------------------- 820
Sbjct 4588 CATGTTGGTGCTGCCTTGCTGCATAAAATTCTAGAGGGCAGGTTAGAGACAGTATGTATGCCTTCGGGAAAATT 4661
Query 821 -------------------------------------------------------------------------- 820
Sbjct 4662 CAAAGGTGGATTACAAGGTGTCCTCAGCATGCCCTATGGCCTATGTGCGAAGCAAGAAGAATTGACTGATTTAC 4735
Query 821 -------------------------------------------------------------------------- 820
Sbjct 4736 AGGACTTCTCTTTATGTCAATCTTAAGAGGATGGATGAATCTGGACATTTGTTCCACCCGACCTCTGACTGATG 4809
Query 821 -------------------------------------------------------------------------- 820
Sbjct 4810 GTTTGGAAAATAACTTTAATTAGGATCATATGACCATTGAAAAAGGAAAAATGTAGACTCTGACTTCCGTCCCA 4883
Query 821 -------------------------------------------------------------------------- 820
Sbjct 4884 CTGAAGGATTAATGAAAACCTTTACTAGCATTTAGAGCTTTTCAGAACATCCCCACTGTCATGTGTCTCAGCAG 4957
Query 821 -------------------------------------------------------------------------- 820
Sbjct 4958 TGGAGACTGCAAGTAAGGCTTTTAATTTTAGGAGGTTTTTTTTTTTTTTTTTTTTTCCCTAAATGGTATGGCCA 5031
Query 821 -------------------------------------------------------------------------- 820
Sbjct 5032 AAAGTCAGAGTTAAAATATATATAGTTAGATTCCAACTTCCTCCTTCACTCTAAAAATAGAATCCAAACCCACT 5105
Query 821 -------------------------------------------------------------------------- 820
Sbjct 5106 CTTCATATATGCTTCCAGAATGGGGCTTAAGTACCAATCTCTGCTTTGCAATGGGCACAATCTTGGTCATGTCC 5179
Query 821 -------------------------------------------------------------------------- 820
Sbjct 5180 TGAGGCTCTCTAAGAAAAGAGAGGATCTAGGATGGGAGAGCTAGAAAGTTGCTAACTGGGAAGAACAAGGCCCT 5253
Query 821 -------------------------------------------------------------------------- 820
Sbjct 5254 GAGGGCTTGGTCTACCAATCTGGGAAGATTTGAAAACAAACTTCTCGCAACTGAAGGAAGGCTGAAGGCTGCTG 5327
Query 821 -------------------------------------------------------------------------- 820
Sbjct 5328 CAAGTCATTGAGTGACTTTAGGATGAGCAAAACATTGGGCCACTTCCTAATGCCCTATGTGTATAGTACCAGAA 5401
Query 821 -------------------------------------------------------------------------- 820
Sbjct 5402 GCAAGGTCTCAGACTTAACAGACCCAGCTCTGTTCCAAGGTGAGTCTGAACCAATAGAAAGCAAACATGTGCAG 5475
Query 821 -------------------------------------------------------------------------- 820
Sbjct 5476 ATATCCAAACAAGACTGCTCATGCAAGTCGGGGCTGGCTACCCGTCTTAGGCAGCAACAGCAGAGCTCCAGGGA 5549
Query 821 -------------------------------------------------------------------------- 820
Sbjct 5550 GCTTATTCAATATTTACTGAGACTTCGAAGACCCAGCAGATGTTTAATGAAGTCACTATTTTGGCTCAAACCCT 5623
Query 821 -------------------------------------------------------------------------- 820
Sbjct 5624 CCACTTCTCCCCCTCCCCTCAAAAAGCCAACAGGTAAACACATAAATGAAAGAAACCCACAGAAGGGGATGGGA 5697
Query 821 -------------------------------------------------------------------------- 820
Sbjct 5698 AATAAAGAAAATTCTCTCAAGACTTCTCCAGGCCCATGTCACTGGTCAGCGTGGTTTTTATGTGTATTAGGATT 5771
Query 821 -------------------------------------------------------------------------- 820
Sbjct 5772 GGGGGATGTGAAGAAATAAGTATCCAGTACTTTATAACCAAAGCAATTAAATGATATTGGGTAGGGAATGTTGG 5845
Query 821 -------------------------------------------------------------------------- 820
Sbjct 5846 CCAGTTTTGTTTAGTTTTGCATCACATTGTCACCAGACTCACTAGCCCAAGTAATCGGGCGCCCGAAGAGGGAG 5919
Query 821 -------------------------------------------------------------------------- 820
Sbjct 5920 ACAGAGATGTGCAGAGTTGACCAGTGTGCGGATGATAACTACTGACGAAAGAGTCATCGACTCAGTTAGTGGTT 5993
Query 821 -------------------------------------------------------------------------- 820
Sbjct 5994 GGATGTAGTCACATTAGTTTGCCTCTCCCCATCTTTGTCTCCCTGGCAAGGAGAATATGCGGGACATGATGCTA 6067
Query 821 -------------------------------------------------------------------------- 820
Sbjct 6068 AGAGTCCTGGGTAAATGTGGTGAGAATGCACGCGTGCATATGCTACACATATGTGCTTCTCAGTTGCAGAAAAT 6141
Query 821 -------------------------------------------------------------------------- 820
Sbjct 6142 GAACTGCTTTGGGAGATTATCAGTAGAAAGAGTGTTATCATATTGGTGCTGAGTGCTATGTGTGCTTATACAAT 6215
Query 821 -------------------------------------------- 820
Sbjct 6216 TTGTTCTTGTATTTTAATAAACTTTGAATAAAAGAATAAAGCTA 6259
