Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_13878
Subject:
NM_001543.5
Aligned Length:
2654
Identities:
1640
Gaps:
994

Alignment

Query    1  ATGTCTGCCCTGGCATGCCTCCGGAGGCTGTGTCGGCACGTGTCCCCGCAGGCTGTCCTTTTCCTGCTGTTAGT  74
            |||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||..|
Sbjct    1  ATGCCTGCCCTGGCATGCCTCCGGAGGCTGTGTCGGCACGTGTCCCCGCAGGCTGTCCTTTTCCTGCTGTTCAT  74

Query   75  CTTCTGCCTGTTCAGCGTTTTCATCTCGGCCTACTACCTATATGGCTGGAAGCGAGGCCTGGAGCCCTCGGCGG  148
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   75  CTTCTGCCTGTTCAGCGTTTTCATCTCGGCCTACTACCTATATGGCTGGAAGCGAGGCCTGGAGCCCTCGGCGG  148

Query  149  ATGCCCCCGAGCCTGACTGCGGGGACCCGCCGCCTGTGGCCCCCAGTCGCCTGCTGCCACTCAAGCCTGTGCAG  222
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  ATGCCCCCGAGCCTGACTGCGGGGACCCGCCGCCTGTGGCCCCCAGTCGCCTGCTGCCACTCAAGCCTGTGCAG  222

Query  223  GCAGCCACCCCTTCCCGCACAGACCCGTTGGTGCTGGTCTTTGTGGAGAGCCTCTACTCGCAACTGGGCCAGGA  296
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  GCAGCCACCCCTTCCCGCACAGACCCGTTGGTGCTGGTCTTTGTGGAGAGCCTCTACTCGCAACTGGGCCAGGA  296

Query  297  GGTGGTGGCCATCCTGGAGTCCAGCCGCTTCAAATACCGCACAGAGATTGCGCCGGGCAAGGGTGACATGCCCA  370
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  GGTGGTGGCCATCCTGGAGTCCAGCCGCTTCAAATACCGCACAGAGATTGCGCCGGGCAAGGGTGACATGCCCA  370

Query  371  CGCTCACTGACAAGGGCCGTGGCCGCTTCGCCCTCATCATCTATGAGAACATCCTCAAGTATGTCAACCTGGAC  444
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  CGCTCACTGACAAGGGCCGTGGCCGCTTCGCCCTCATCATCTATGAGAACATCCTCAAGTATGTCAACCTGGAC  444

Query  445  GCCTGGAACCGGGAGCTGCTGGACAAGTACTGTGTGGCCTACGGCGTGGGCATCATTGGCTTCTTCAAGGCCAA  518
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  GCCTGGAACCGGGAGCTGCTGGACAAGTACTGTGTGGCCTACGGCGTGGGCATCATTGGCTTCTTCAAGGCCAA  518

Query  519  TGAGAACAGCCTGCTGAGTGCGCAGCTCAAGGGCTTCCCCCTGTTCCTGCACTCAAACCTGGGCCTGAAGGACT  592
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  TGAGAACAGCCTGCTGAGTGCGCAGCTCAAGGGCTTCCCCCTGTTCCTGCACTCAAACCTGGGCCTGAAGGACT  592

Query  593  GCAGCATCAACCCCAAGTCCCCGCTGCTCTACGTGACGCGACCTAGCGAGGTGGAGAAAGGTGTGCTCCCCGGC  666
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  GCAGCATCAACCCCAAGTCCCCGCTGCTCTACGTGACGCGACCTAGCGAGGTGGAGAAAGGTGTGCTCCCCGGC  666

Query  667  GAGGACTGGACGGTTTTCCAGTCAAATCACTCCACCTATGAGCCAGTGCTGCTGGCCAAGACGCGCTCGTCTGA  740
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  GAGGACTGGACGGTTTTCCAGTCAAATCACTCCACCTATGAGCCAGTGCTGCTGGCCAAGACGCGCTCGTCTGA  740

Query  741  GTCCATCCCACACCTGGGCGCAGACGCCGGCCTGCATGCTGCACTGCACGCCACTGTGGTCCAGGACCTGGGCC  814
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  GTCCATCCCACACCTGGGCGCAGACGCCGGCCTGCATGCTGCACTGCACGCCACTGTGGTCCAGGACCTGGGCC  814

Query  815  TGCACGACGGCATCCAGCGCGTGCTGTTTGGCAACAACCTGAACTTCTGGCTGCACAAGCTTGTCTTCGTGGAT  888
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  TGCACGACGGCATCCAGCGCGTGCTGTTTGGCAACAACCTGAACTTCTGGCTGCACAAGCTTGTCTTCGTGGAT  888

Query  889  GCCGTGGCCTTCCTCACGGGGAAGCGCCTCTCCCTGCCATTGGACCGCTACATCCTGGTGGACATTGATGACAT  962
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  GCCGTGGCCTTCCTCACGGGGAAGCGCCTCTCCCTGCCATTGGACCGCTACATCCTGGTGGACATTGATGACAT  962

Query  963  CTTCGTGGGCAAGGAGGGCACACGCATGAAGGTGGAGGACGTGAAGGCCCTGTTTGACACACAGAACGAACTAC  1036
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  CTTCGTGGGCAAGGAGGGCACACGCATGAAGGTGGAGGACGTGAAGGCCCTGTTTGACACACAGAACGAACTAC  1036

Query 1037  GCGCACACATCCCAAACTTCACCTTCAACCTGGGCTACTCAGGGAAATTCTTCCAGACAGGTACCAATGCTGAG  1110
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||
Sbjct 1037  GCGCACACATCCCAAACTTCACCTTCAACCTGGGCTACTCAGGGAAATTCTTCCACACAGGTACCAATGCTGAG  1110

Query 1111  GACGCTGGGGATGATCTGCTGCTGTCGTATGTGAAGGAGTTCTGGTGGTTCCCCCACATGTGGAGCCACATGCA  1184
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  GACGCTGGGGATGATCTGCTGCTGTCGTATGTGAAGGAGTTCTGGTGGTTCCCCCACATGTGGAGCCACATGCA  1184

Query 1185  GCCCCACCTTTTCCACAACCAGTCCGTGTTGGCCGAGCAGATGGCCTTGAACAAGAAGTTCGCTGTCGAGCATG  1258
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  GCCCCACCTTTTCCACAACCAGTCCGTGTTGGCCGAGCAGATGGCCTTGAACAAGAAGTTCGCTGTCGAGCATG  1258

Query 1259  GCATTCCCACAGACATGGGGTATGCAGTGGCGCCCCACCACTCGGGCGTGTACCCCGTGCACGTGCAGCTGTAC  1332
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  GCATTCCCACAGACATGGGGTATGCAGTGGCGCCCCACCACTCGGGCGTGTACCCCGTGCACGTGCAGCTGTAC  1332

Query 1333  GAGGCTTGGAAGCAGGTGTGGAGCATCCGCGTGACCAGCACGGAGGAGTACCCCCACCTGAAGCCAGCCCGCTA  1406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  GAGGCTTGGAAGCAGGTGTGGAGCATCCGCGTGACCAGCACGGAGGAGTACCCCCACCTGAAGCCAGCCCGCTA  1406

Query 1407  CCGCCGTGGCTTCATCCACAATGGCATCATGGTTCTCCCACGGCAGACCTGCGGCCTCTTCACACACACCATCT  1480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  CCGCCGTGGCTTCATCCACAATGGCATCATGGTTCTCCCACGGCAGACCTGCGGCCTCTTCACACACACCATCT  1480

Query 1481  TCTACAACGAGTACCCTGGCGGCTCCAGTGAGCTGGACAAGATCATCAACGGGGGCGAGCTCTTCCTCACCGTG  1554
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  TCTACAACGAGTACCCTGGCGGCTCCAGTGAGCTGGACAAGATCATCAACGGGGGCGAGCTCTTCCTCACCGTG  1554

Query 1555  CTCCTCAATCCTGTGAG-----------------TGCTCC-------------ACAGCCCATGG--CTG-----  1591
            ||||||||||||.|.||                 || |||             ||.|||  |||  |||     
Sbjct 1555  CTCCTCAATCCTATCAGCATCTTCATGACGCACCTG-TCCAACTATGGGAATGACCGCC--TGGGCCTGTACAC  1625

Query 1592  ----------CTGGTG-------------------AGAA---GGGGCTGCTG-CACAG---CCTGTCTGCAGCT  1629
                      ||||||                   .|||   ..||||||.| |||.|   ||||  |||||.|
Sbjct 1626  CTTCAAGCACCTGGTGCGCTTCCTGCACTCCTGGACGAACCTCCGGCTGCAGACACTGCCCCCTG--TGCAGTT  1697

Query 1630  GACACAG----GCTTCCTGGAG--------CCAGGAAAGGG--------TG-----------GAGAGG-CA---  1668
            |.|.|||    .|||||   ||        |.||||.|.||        ||           |.|||| ||   
Sbjct 1698  GGCGCAGAAGTACTTCC---AGATCTTCTCCGAGGAGAAGGACCCGCTCTGGCAGGACCCCTGCGAGGACAAAC  1768

Query 1669  --------------------------------------------------------------------------  1668
                                                                                      
Sbjct 1769  GTCACAAAGACATCTGGTCCAAGGAGAAGACGTGTGACCGCTTCCCAAAGCTCCTCATCATCGGCCCCCAGAAA  1842

Query 1669  --------------------------------------------------------------------------  1668
                                                                                      
Sbjct 1843  ACAGGCACCACTGCCCTCTACCTGTTCCTGGGCATGCACCCTGACCTAAGCAGCAACTACCCCAGCTCTGAGAC  1916

Query 1669  --------------------------------------------------------------------------  1668
                                                                                      
Sbjct 1917  CTTTGAGGAGATCCAGTTTTTTAATGGCCACAACTATCACAAAGGCATCGACTGGTACATGGAGTTCTTCCCCA  1990

Query 1669  --------------------------------------------------------------------------  1668
                                                                                      
Sbjct 1991  TCCCTTCCAACACCACCTCCGACTTCTACTTTGAGAAAAGCGCCAACTACTTTGATTCAGAAGTGGCGCCCCGG  2064

Query 1669  --------------------------------------------------------------------------  1668
                                                                                      
Sbjct 2065  CGGGCAGCAGCCCTCTTGCCCAAAGCCAAGGTCCTGACCATCCTCATCAACCCCGCGGACCGGGCCTATTCCTG  2138

Query 1669  --------------------------------------------------------------------------  1668
                                                                                      
Sbjct 2139  GTACCAGCACCAGCGAGCCCATGACGACCCAGTGGCCCTAAAGTACACCTTCCATGAGGTGATTACCGCCGGCT  2212

Query 1669  --------------------------------------------------------------------------  1668
                                                                                      
Sbjct 2213  CTGACGCATCCTCGAAGCTGCGTGCCCTCCAGAACCGCTGCCTGGTCCCTGGCTGGTACGCCACCCACATCGAG  2286

Query 1669  --------------------------------------------------------------------------  1668
                                                                                      
Sbjct 2287  CGCTGGCTCAGTGCCTATCACGCCAACCAGATTCTGGTCTTGGATGGCAAACTGCTTCGCACAGAACCTGCCAA  2360

Query 1669  --------------------------------------------------------------------------  1668
                                                                                      
Sbjct 2361  AGTGATGGACATGGTGCAGAAGTTCCTTGGGGTGACCAACACCATTGACTACCACAAAACCTTGGCGTTTGATC  2434

Query 1669  --------------------------------------------------------------------------  1668
                                                                                      
Sbjct 2435  CAAAGAAAGGATTTTGGTGCCAACTGCTTGAAGGAGGAAAAACCAAGTGTCTGGGCAAAAGCAAGGGCCGGAAA  2508

Query 1669  --------------------------------------------------------------------------  1668
                                                                                      
Sbjct 2509  TATCCCGAGATGGACTTGGATTCCCGAGCCTTCCTGAAGGACTATTACCGGGACCACAACATCGAGCTCTCCAA  2582

Query 1669  ----------------------------------------------------------------  1668
                                                                            
Sbjct 2583  GCTGCTGTATAAGATGGGCCAGACACTTCCCACTTGGCTACGAGAGGACCTCCAGAACACCAGG  2646

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