Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_13916
Subject:
XM_017315094.1
Aligned Length:
3767
Identities:
2029
Gaps:
1462

Alignment

Query    1  ATGCAGCTTAAAATAATGCCGAAAAAGAAGCGCTTATCTGCGGGCAGAGTGCCCCTGATTCTCTTCCTGTGCCA  74
            |||||||||||||||||||||||.|||||||.|||||||||.|||.||||||||||||||||||||||||||||
Sbjct    1  ATGCAGCTTAAAATAATGCCGAAGAAGAAGCACTTATCTGCAGGCGGAGTGCCCCTGATTCTCTTCCTGTGCCA  74

Query   75  GATGATTAGTGCACTGGAAGTACCTCTTGATC------------------TGGTACAGCCTCCAACCATCACCC  130
            ||||||.||.||.|||||.||.|||||.||||                  |||||||.||||||||||||||.|
Sbjct   75  GATGATCAGCGCGCTGGATGTTCCTCTCGATCCAAAGCTCCTTCATGACTTGGTACAACCTCCAACCATCACTC  148

Query  131  AACAGTCTCCAAAAGATTACATTATTGACCCTCGGGAGAATATTGTAATCCAGTGTGAAGCCAAAGGGAAACCG  204
            |||||||.||||||||.|||||.|||||||||||||||||||||||||||||||||||.||||||||||||||.
Sbjct  149  AACAGTCACCAAAAGACTACATCATTGACCCTCGGGAGAATATTGTAATCCAGTGTGAGGCCAAAGGGAAACCT  222

Query  205  CCCCCAAGCTTTTCCTGGACCCGTAATGGGACTCATTTTGACATCGATAAAGACCCTCTGGTCACCATGAAGCC  278
            ||||||||||||||||||||.||||||||.|||||.||||||||.||.||.|||||||||||||||||||||||
Sbjct  223  CCCCCAAGCTTTTCCTGGACTCGTAATGGAACTCACTTTGACATAGACAAGGACCCTCTGGTCACCATGAAGCC  296

Query  279  TGGCACAGGAACGCTCATAATTAACATCATGAGCGAAGGGAAAGCTGAGACCTATGAAGGAGTCTATCAGTGTA  352
            ||||.|||||||.||..|.||.|||||||||||.||.|||||.||.||||||||||||||||||||.|||||.|
Sbjct  297  TGGCTCAGGAACCCTTGTCATCAACATCATGAGTGAGGGGAAGGCAGAGACCTATGAAGGAGTCTACCAGTGCA  370

Query  353  CAGCAAGGAACGAACGCGGAGCTGCAGTTTCTAATAACATTGTTGTCCGCCCATCCAGATCACCATTGTGGACC  426
            |.|||||||||||.||.||||||||.||.||.|||||||||||||||||||||||.||.|||||.|||||||||
Sbjct  371  CTGCAAGGAACGAGCGTGGAGCTGCCGTCTCCAATAACATTGTTGTCCGCCCATCTAGGTCACCCTTGTGGACC  444

Query  427  AAAGAAAAACTTGAACCAATCACACTTCAAAGTGGTCAGTCTTTAGTACTTCCCTGCAGACCCCCAATTGGATT  500
            ||.||||.|||||||||.||...|||.||.|.|||.|||||.|||||||||||.||.||.||.||.||||||||
Sbjct  445  AAGGAAAGACTTGAACCTATAGTACTCCAGAATGGGCAGTCATTAGTACTTCCATGTAGGCCTCCGATTGGATT  518

Query  501  ACCACCACCTATAATATTTTGGATGGATAATTCCTTTCAAAGACTTCCACAAAGTGAGAGAGTTTCTCAAGGTT  574
            |||.||..|.|||||||||||||||||||||||||||||.|||||||||||.||||||.|.|||||.|||||..
Sbjct  519  ACCTCCGGCCATAATATTTTGGATGGATAATTCCTTTCAGAGACTTCCACAGAGTGAGCGGGTTTCCCAAGGCC  592

Query  575  TGAATGGGGACCTTTATTTTTCCAATGTCCTCCCAGAGGACACCCGCGAAGACTATATCTGTTATGCTAGATTT  648
            |.|||||.||||||||.||.||||||||||||||||||||||||||.||.|||||||||||.|||||.||||||
Sbjct  593  TAAATGGAGACCTTTACTTCTCCAATGTCCTCCCAGAGGACACCCGTGAGGACTATATCTGCTATGCCAGATTT  666

Query  649  AATCATACTCAAACCATACAGCAGAAGCAACCTATTTCTGTGAAGGTGATTTCAGTGGATGAATTGAATGACAC  722
            |||||.|||||||||||.|||||||||||.|||||||||.||||||||||||||||||||||||||||||||||
Sbjct  667  AATCACACTCAAACCATCCAGCAGAAGCAGCCTATTTCTTTGAAGGTGATTTCAGTGGATGAATTGAATGACAC  740

Query  723  TATAGCTGCTAATTTGAGTGACACTGAGTTTTATGGTGCTAAATCAAGTAGAGAGAGGCCACCAACATTTTTAA  796
            |||||||||||||||||||||||||||||||||||||||||||||.||||.|||||||||.|||||.|||.|||
Sbjct  741  TATAGCTGCTAATTTGAGTGACACTGAGTTTTATGGTGCTAAATCTAGTAAAGAGAGGCCCCCAACGTTTCTAA  814

Query  797  CTCCAGAAGGCAATGCAAGTAACAAAGAGGAATTAAGAGGAAATGTGCTTTCACTGGAGTGCATTGCAGAAGGA  870
            |||||||.|||||||.|||..||||||||||||||||||||||.||||||||.||||||||||||||.|||||.
Sbjct  815  CTCCAGAGGGCAATGAAAGCCACAAAGAGGAATTAAGAGGAAACGTGCTTTCGCTGGAGTGCATTGCGGAAGGC  888

Query  871  CTGCCTACCCCAATTATTTACTGG-GCAAAGGAAGATGGAATGCTACCCAAAAACAGGACAGTTTATAAGAACT  943
            ||.|||||.||||||||||||||| .|||| |||||.||||||||.|||...|||.|||||.|||||..|||||
Sbjct  889  CTACCTACTCCAATTATTTACTGGATCAAA-GAAGACGGAATGCTTCCCGCCAACCGGACATTTTATCGGAACT  961

Query  944  TTGAGAAAACCTTGCAGATCATTCATGTTTCAGAAGCAGACTCTGGAAATTACCAATGTATAGCAAAAAACGCA  1017
            ||.||||||||.|||||||||.|||||||||.|||||.||||||||||||||.||.||.|||||||||||||||
Sbjct  962  TTAAGAAAACCCTGCAGATCACTCATGTTTCCGAAGCCGACTCTGGAAATTATCAGTGCATAGCAAAAAACGCA  1035

Query 1018  TTAGGAGCCATCCACCATACCATTTCTGTTAGAGTTAAAGCGGCTCCATACTGGATCACAGCCCCTCAAAATCT  1091
            |||||||||.||||.||.|||||||||||.|..||||||||||||||.|||||||||...||.||||||||.||
Sbjct 1036  TTAGGAGCCGTCCATCACACCATTTCTGTCACTGTTAAAGCGGCTCCCTACTGGATCGTGGCACCTCAAAACCT  1109

Query 1092  TGTGCTGTCCCCAGGAGAGGATGGGACCTTGATCTGCAGAGCTAATGGCAACCCCAAACCCAGAATTAGCTGGT  1165
            .|||||.|||||.||||||.||||||||.|.|||||||||||||||||||||||.|||||||||||||||||||
Sbjct 1110  CGTGCTTTCCCCGGGAGAGAATGGGACCCTCATCTGCAGAGCTAATGGCAACCCGAAACCCAGAATTAGCTGGT  1183

Query 1166  TAACAAATGGAGTCCCAATAGAAATTGCCCCTGATGACCCCAGCAGAAAAATAGATGGCGATACCATTATTTTT  1239
            ||||||||||||||||||||||||||||.|..||||||||||||||||||||||||||||||||||||||.|||
Sbjct 1184  TAACAAATGGAGTCCCAATAGAAATTGCTCTCGATGACCCCAGCAGAAAAATAGATGGCGATACCATTATATTT  1257

Query 1240  TCAAATGTTCAAGAAAGATCAAGTGCAGTATATCAGTGCAATGCCTCTAATGAATATGGATATTTACTGGCAAA  1313
            |||||||||||||||||.||||||||.||.||||||||||||||||||||..||||||||||||||||.|||||
Sbjct 1258  TCAAATGTTCAAGAAAGCTCAAGTGCGGTTTATCAGTGCAATGCCTCTAACAAATATGGATATTTACTAGCAAA  1331

Query 1314  CGCATTTGTAAATGTGCTGGCTGAGCCACCACGAATCCTCACACCTGCAAACACACTCTACCAGGTCATTGCAA  1387
            .||||||||||||||.||.|||||.|||||.||.||.||||||.|.|||||||||||.||||||||||||||||
Sbjct 1332  TGCATTTGTAAATGTTCTCGCTGAACCACCTCGGATTCTCACATCAGCAAACACACTGTACCAGGTCATTGCAA  1405

Query 1388  ACAGGCCTGCTTTACTAGACTGTGCCTTCTTTGGGTCTCCTCTCCCAACCATCGAGTGGTTTAAAGGAGCTAAA  1461
            |||||||||||||.|||||.||||||||||||||.||||||.|.||.|||||.||||||||||||||..|||||
Sbjct 1406  ACAGGCCTGCTTTGCTAGATTGTGCCTTCTTTGGATCTCCTATGCCTACCATTGAGTGGTTTAAAGGCACTAAA  1479

Query 1462  GGAAGTGCTCTTCATGAAGATATTTATGTTTTACATGAAAATGGAACTTTGGAAATTCCTGTGGCCCAAAAGGA  1535
            |||||.||||||||||||||.|||||||||||.|||||.||||||||.||.||||||||.||||||||||||||
Sbjct 1480  GGAAGCGCTCTTCATGAAGACATTTATGTTTTGCATGATAATGGAACATTAGAAATTCCCGTGGCCCAAAAGGA  1553

Query 1536  CAGTACAGGAACTTATACGTGTGTTGCAAGGAATAAATTAGGGATGGCAAAGAATGAAGTTCACTTAGAAATCA  1609
            .||||||||.||.|||||.|||||.|||.||||||||.||||||||||||||||||||||||||||.|||||||
Sbjct 1554  TAGTACAGGGACGTATACTTGTGTCGCACGGAATAAACTAGGGATGGCAAAGAATGAAGTTCACTTGGAAATCA  1627

Query 1610  AAGATGCTACATGGATCGTTAAACAGCCCGAATATGCAGTTGTGCAAAGAGGGAGCATGGTGTCCTTTGAATGC  1683
            |||||.|.||..|||||.|||||||.||.||.||||||||.||.||.||.|||||||.||||||||||||||||
Sbjct 1628  AAGATCCAACCAGGATCATTAAACAACCTGAGTATGCAGTCGTCCAGAGGGGGAGCAAGGTGTCCTTTGAATGC  1701

Query 1684  AAAGTGAAACATGATCACACCTT-ATCCCTCACTGTCCTGTGGCTGAAGGACAACAGGGAACTGCCCAGTGATG  1756
            |.||||||||||||.|||||||| ||||| |||..|..||||||||||||||||..|.||.|||||||.|||||
Sbjct 1702  AGAGTGAAACATGACCACACCTTAATCCC-CACCATTATGTGGCTGAAGGACAATGGAGAGCTGCCCAATGATG  1774

Query 1757  AAAGGTTCACTGTTGACAAGGATCATCTAGTGGTAGCTGATGTCA---GTGACGATGACAGCGGGACCTACACG  1827
            ||||||||.|...|||||||||||||||.||||||.|||||||.|   .||||||||   ||||.|||||||||
Sbjct 1775  AAAGGTTCTCCACTGACAAGGATCATCTGGTGGTATCTGATGTAAAGGATGACGATG---GCGGAACCTACACG  1845

Query 1828  TGTGTGGCCAACACCACTCTGGACAGCGTCTCCGCCAGCGCTGTGCTTAGCGTTGT------------------  1883
            |||..|||||||||.||.||||||||.|..||.||||||||||||||.||.|||||                  
Sbjct 1846  TGTACGGCCAACACAACGCTGGACAGTGCTTCGGCCAGCGCTGTGCTCAGGGTTGTCGCTCCTACTCCAACTCC  1919

Query 1884  ------------TGATGTCCCAAATCCTCCCTTTGACTTAGAACTGACAGATCAACTTGACAAAAGTGTTCAGC  1945
                        .||||||||.||||||||||||||.||||||.||||..||||||||||||||||||||||||
Sbjct 1920  AGCCCCCATTTACGATGTCCCGAATCCTCCCTTTGATTTAGAATTGACCAATCAACTTGACAAAAGTGTTCAGC  1993

Query 1946  TGTCATGGACCCCAGGCGATGACAACAATAGCCCCATTACAAAATTCATCATCGAATATGAAGATGCAATGCAC  2019
            ||.||||||||||||||||.||||||||||||||||||||||||||||||||.||.|||||||||||||||||.
Sbjct 1994  TGACATGGACCCCAGGCGACGACAACAATAGCCCCATTACAAAATTCATCATTGAGTATGAAGATGCAATGCAT  2067

Query 2020  AAGCCAGGGCTGTGGCACCACCAAACTGAAGTTTCTGGAACACAGACCACAGCCCAGCTGAAGCTGTCTCCTTA  2093
            .|..||||||||||||.||||||..|||||||||||||||||||||||||||||||.||||||||||||||.||
Sbjct 2068  GATGCAGGGCTGTGGCGCCACCAGGCTGAAGTTTCTGGAACACAGACCACAGCCCAACTGAAGCTGTCTCCCTA  2141

Query 2094  CGTGAACTACTCCTTCCGCGTGATGGCAGTGAACAGCATTGGGAAGAGCTTGCCCAGCGAGGCCTCTGAGCAGT  2167
            .|||||||||||||||||.||.|||||||.||||||||||||||..||..||||.||||||||.||.|||||||
Sbjct 2142  TGTGAACTACTCCTTCCGTGTCATGGCAGAGAACAGCATTGGGAGAAGTATGCCGAGCGAGGCATCCGAGCAGT  2215

Query 2168  ATTTGACGAAAGCCTCAGAACCAGATAAAAACCCCACAGCTGTGGAAGGACT-GGGATCAGAGCCTGATAATTT  2240
            ||.|.||.||||||.|||||||||||.|.||.||||..|||||||||||||| |||| |||||||.||.||.||
Sbjct 2216  ATCTTACAAAAGCCGCAGAACCAGATCAGAATCCCATGGCTGTGGAAGGACTAGGGA-CAGAGCCGGACAACTT  2288

Query 2241  GGTGATTACGTGGAAGCCCTTGAATGGTTTCGAATCTAATGGGCCAGGCCTTCAG-ACAA---GTACTGCCTCT  2310
            |||||||||.|||||||||.||||||||||..||||.||||||||.|||||.||| ||||   |..|||.|.| 
Sbjct 2289  GGTGATTACATGGAAGCCCCTGAATGGTTTTCAATCGAATGGGCCTGGCCTCCAGTACAAAGTGAGCTGGCGC-  2361

Query 2311  TCT-----------------------------------------------------------------------  2313
             |.                                                                       
Sbjct 2362  -CAGAAAGATGGTGACGATGAGTGGACGTCTGTGGTTGTGGCCAATGTATCCAAATACATTGTTTCTGGCACAC  2434

Query 2314  --------------------------------------------------------------------------  2313
                                                                                      
Sbjct 2435  CAACCTTTGTCCCATACCTGATAAAAGTTCAAGCTCTGAATGATGTGGGGTTTGCACCAGAGCCAGCTGCAGTC  2508

Query 2314  --------------------------------------------------------------------------  2313
                                                                                      
Sbjct 2509  ATGGGGCATTCTGGAGAAGACCTTCCAATGGTGGCTCCTGGAAATGTTCGCGTCAGCGTGGTGAACAGTACGCT  2582

Query 2314  --------------------------------------------------------------------------  2313
                                                                                      
Sbjct 2583  GGCAGAGGTGCACTGGGACCCAGTTCCTCCCAAGAGTGTCCGAGGACACTTACAAGGCTACCGGATTTACTACT  2656

Query 2314  --------------------------------------------------------------------------  2313
                                                                                      
Sbjct 2657  GGAAGACCCAGAGCTCCTCTAAAAGAAACAGGCGCCACATTGAGAAGAAGATCCTCACCTTCCAGGGCACCAAG  2730

Query 2314  --------------------------------------------------------------------------  2313
                                                                                      
Sbjct 2731  ACTCACGGCATGCTGCCAGGGCTGCAGCCATACAGTCACTATGCCCTCAACGTCCGAGTGGTCAACGGGAAAGG  2804

Query 2314  --------------------------------------------------------------------------  2313
                                                                                      
Sbjct 2805  GGAGGGCCCAGCCAGCACGGACAGAGGCTTCCATACACCGGAGGGAGTCCCTAGTGCTCCCTCATCTTTGAAAA  2878

Query 2314  --------------------------------------------------------------------------  2313
                                                                                      
Sbjct 2879  TTGTTAATCCCACACTGGACTCCCTCACTTTGGAATGGGACCCCCCAAGCCACCCAAATGGCATCCTGACTGAG  2952

Query 2314  --------------------------------------------------------------------------  2313
                                                                                      
Sbjct 2953  TACATCTTACAATATCAGCCAATTAACAGCACACATGAGCTAGGCCCTCTGGTAGATTTAAAAATTCCTGCCAA  3026

Query 2314  --------------------------------------------------------------------------  2313
                                                                                      
Sbjct 3027  CAAGACCCGCTGGACTTTGAAAAATTTAAATTTCAGCACTCGGTACAAGTTCTATTTCTATGCACAGACATCAG  3100

Query 2314  --------------------------------------------------------------------------  2313
                                                                                      
Sbjct 3101  TGGGGCCAGGCAGTCAGATCACAGAGGAAGCGATAACGACTGTGGACGAAGGTAAGAAGGGCAAAGAAGAATGG  3174

Query 2314  --------------------------------------------------------------------------  2313
                                                                                      
Sbjct 3175  AGGAAAGAAATTGTAAATGGTTCTCGAAGCTTCTTTGGGTTAAAGGGTCTAATGCCAGGAACAGCATACAAAGT  3248

Query 2314  --------------------------------------------------------------------------  2313
                                                                                      
Sbjct 3249  TCGAGTTGGTGCTGAGGGGGACTCTGGTTTTGTGAGTTCAGAGGATGTGTTTGAGACAGGACCAGCAATGGCAA  3322

Query 2314  --------------------------------------------------------------------------  2313
                                                                                      
Sbjct 3323  GCCGGCAAGTGGATATCGCGACCCAAGGCTGGTTCATAGGTCTAATGTGCGCTGTTGCTCTCCTCATCTTAATT  3396

Query 2314  --------------------------------------------------------------------------  2313
                                                                                      
Sbjct 3397  TTGCTGATTGTTTGCTTCATCAGAAGAAACAAAGGTGGTAAATACCCAGTTAAAGAAAAGGAGGATGCTCATGC  3470

Query 2314  --------------------------------------------------------------------------  2313
                                                                                      
Sbjct 3471  AGACCCTGAAATCCAGCCCATGAAGGAAGATGATGGGACGTTTGGAGAATACAGTGATGCAGAAGATCACAAGC  3544

Query 2314  --------------------------------------------------------------------------  2313
                                                                                      
Sbjct 3545  CTTTGAAAAAAGGAAGTCGAACACCTTCAGACAGGACTGTGAAAAAAGAAGATAGCGATGATAGTCTGGTTGAC  3618

Query 2314  --------------------------------------------------------------------------  2313
                                                                                      
Sbjct 3619  TATGGAGAGGGGGTGAACGGCCAATTCAACGAGGATGGCTCCTTTATTGGCCAATACAGTGGTAAGAAAGAGAA  3692

Query 2314  -------------------------------------------------------------------  2313
                                                                               
Sbjct 3693  AGAGCCAGCAGAGGGAAATGAAAGCTCAGAGGCCCCTTCTCCTGTCAACGCAATGAACTCCTTTGTT  3759

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