Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_13916
Subject:
XM_017315097.1
Aligned Length:
3635
Identities:
2029
Gaps:
1330

Alignment

Query    1  ATGCAGCTTAAAATAATGCCGAAAAAGAAGCGCTTATCTGCGGGCAGAGTGCCCCTGATTCTCTTCCTGTGCCA  74
            |||||||||||||||||||||||.|||||||.|||||||||.|||.||||||||||||||||||||||||||||
Sbjct    1  ATGCAGCTTAAAATAATGCCGAAGAAGAAGCACTTATCTGCAGGCGGAGTGCCCCTGATTCTCTTCCTGTGCCA  74

Query   75  GATGATTAGTGCACTGGAAGTACCTCTTGATCTGGTACAGCCTCCAACCATCACCCAACAGTCTCCAAAAGATT  148
            ||||||.||.||.|||||.||.|||||.|||||||||||.||||||||||||||.||||||||.||||||||.|
Sbjct   75  GATGATCAGCGCGCTGGATGTTCCTCTCGATCTGGTACAACCTCCAACCATCACTCAACAGTCACCAAAAGACT  148

Query  149  ACATTATTGACCCTCGGGAGAATATTGTAATCCAGTGTGAAGCCAAAGGGAAACCGCCCCCAAGCTTTTCCTGG  222
            ||||.|||||||||||||||||||||||||||||||||||.||||||||||||||.||||||||||||||||||
Sbjct  149  ACATCATTGACCCTCGGGAGAATATTGTAATCCAGTGTGAGGCCAAAGGGAAACCTCCCCCAAGCTTTTCCTGG  222

Query  223  ACCCGTAATGGGACTCATTTTGACATCGATAAAGACCCTCTGGTCACCATGAAGCCTGGCACAGGAACGCTCAT  296
            ||.||||||||.|||||.||||||||.||.||.|||||||||||||||||||||||||||.|||||||.||..|
Sbjct  223  ACTCGTAATGGAACTCACTTTGACATAGACAAGGACCCTCTGGTCACCATGAAGCCTGGCTCAGGAACCCTTGT  296

Query  297  AATTAACATCATGAGCGAAGGGAAAGCTGAGACCTATGAAGGAGTCTATCAGTGTACAGCAAGGAACGAACGCG  370
            .||.|||||||||||.||.|||||.||.||||||||||||||||||||.|||||.||.|||||||||||.||.|
Sbjct  297  CATCAACATCATGAGTGAGGGGAAGGCAGAGACCTATGAAGGAGTCTACCAGTGCACTGCAAGGAACGAGCGTG  370

Query  371  GAGCTGCAGTTTCTAATAACATTGTTGTCCGCCCATCCAGATCACCATTGTGGACCAAAGAAAAACTTGAACCA  444
            |||||||.||.||.|||||||||||||||||||||||.||.|||||.|||||||||||.||||.|||||||||.
Sbjct  371  GAGCTGCCGTCTCCAATAACATTGTTGTCCGCCCATCTAGGTCACCCTTGTGGACCAAGGAAAGACTTGAACCT  444

Query  445  ATCACACTTCAAAGTGGTCAGTCTTTAGTACTTCCCTGCAGACCCCCAATTGGATTACCACCACCTATAATATT  518
            ||...|||.||.|.|||.|||||.|||||||||||.||.||.||.||.|||||||||||.||..|.||||||||
Sbjct  445  ATAGTACTCCAGAATGGGCAGTCATTAGTACTTCCATGTAGGCCTCCGATTGGATTACCTCCGGCCATAATATT  518

Query  519  TTGGATGGATAATTCCTTTCAAAGACTTCCACAAAGTGAGAGAGTTTCTCAAGGTTTGAATGGGGACCTTTATT  592
            |||||||||||||||||||||.|||||||||||.||||||.|.|||||.|||||..|.|||||.||||||||.|
Sbjct  519  TTGGATGGATAATTCCTTTCAGAGACTTCCACAGAGTGAGCGGGTTTCCCAAGGCCTAAATGGAGACCTTTACT  592

Query  593  TTTCCAATGTCCTCCCAGAGGACACCCGCGAAGACTATATCTGTTATGCTAGATTTAATCATACTCAAACCATA  666
            |.||||||||||||||||||||||||||.||.|||||||||||.|||||.|||||||||||.|||||||||||.
Sbjct  593  TCTCCAATGTCCTCCCAGAGGACACCCGTGAGGACTATATCTGCTATGCCAGATTTAATCACACTCAAACCATC  666

Query  667  CAGCAGAAGCAACCTATTTCTGTGAAGGTGATTTCAGTGGATGAATTGAATGACACTATAGCTGCTAATTTGAG  740
            |||||||||||.|||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  CAGCAGAAGCAGCCTATTTCTTTGAAGGTGATTTCAGTGGATGAATTGAATGACACTATAGCTGCTAATTTGAG  740

Query  741  TGACACTGAGTTTTATGGTGCTAAATCAAGTAGAGAGAGGCCACCAACATTTTTAACTCCAGAAGGCAATGCAA  814
            |||||||||||||||||||||||||||.||||.|||||||||.|||||.|||.||||||||||.|||||||.||
Sbjct  741  TGACACTGAGTTTTATGGTGCTAAATCTAGTAAAGAGAGGCCCCCAACGTTTCTAACTCCAGAGGGCAATGAAA  814

Query  815  GTAACAAAGAGGAATTAAGAGGAAATGTGCTTTCACTGGAGTGCATTGCAGAAGGACTGCCTACCCCAATTATT  888
            |..||||||||||||||||||||||.||||||||.||||||||||||||.|||||.||.|||||.|||||||||
Sbjct  815  GCCACAAAGAGGAATTAAGAGGAAACGTGCTTTCGCTGGAGTGCATTGCGGAAGGCCTACCTACTCCAATTATT  888

Query  889  TACTGG-GCAAAGGAAGATGGAATGCTACCCAAAAACAGGACAGTTTATAAGAACTTTGAGAAAACCTTGCAGA  961
            |||||| .|||| |||||.||||||||.|||...|||.|||||.|||||..|||||||.||||||||.||||||
Sbjct  889  TACTGGATCAAA-GAAGACGGAATGCTTCCCGCCAACCGGACATTTTATCGGAACTTTAAGAAAACCCTGCAGA  961

Query  962  TCATTCATGTTTCAGAAGCAGACTCTGGAAATTACCAATGTATAGCAAAAAACGCATTAGGAGCCATCCACCAT  1035
            |||.|||||||||.|||||.||||||||||||||.||.||.||||||||||||||||||||||||.||||.||.
Sbjct  962  TCACTCATGTTTCCGAAGCCGACTCTGGAAATTATCAGTGCATAGCAAAAAACGCATTAGGAGCCGTCCATCAC  1035

Query 1036  ACCATTTCTGTTAGAGTTAAAGCGGCTCCATACTGGATCACAGCCCCTCAAAATCTTGTGCTGTCCCCAGGAGA  1109
            |||||||||||.|..||||||||||||||.|||||||||...||.||||||||.||.|||||.|||||.|||||
Sbjct 1036  ACCATTTCTGTCACTGTTAAAGCGGCTCCCTACTGGATCGTGGCACCTCAAAACCTCGTGCTTTCCCCGGGAGA  1109

Query 1110  GGATGGGACCTTGATCTGCAGAGCTAATGGCAACCCCAAACCCAGAATTAGCTGGTTAACAAATGGAGTCCCAA  1183
            |.||||||||.|.|||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||
Sbjct 1110  GAATGGGACCCTCATCTGCAGAGCTAATGGCAACCCGAAACCCAGAATTAGCTGGTTAACAAATGGAGTCCCAA  1183

Query 1184  TAGAAATTGCCCCTGATGACCCCAGCAGAAAAATAGATGGCGATACCATTATTTTTTCAAATGTTCAAGAAAGA  1257
            ||||||||||.|..||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||.
Sbjct 1184  TAGAAATTGCTCTCGATGACCCCAGCAGAAAAATAGATGGCGATACCATTATATTTTCAAATGTTCAAGAAAGC  1257

Query 1258  TCAAGTGCAGTATATCAGTGCAATGCCTCTAATGAATATGGATATTTACTGGCAAACGCATTTGTAAATGTGCT  1331
            ||||||||.||.||||||||||||||||||||..||||||||||||||||.|||||.||||||||||||||.||
Sbjct 1258  TCAAGTGCGGTTTATCAGTGCAATGCCTCTAACAAATATGGATATTTACTAGCAAATGCATTTGTAAATGTTCT  1331

Query 1332  GGCTGAGCCACCACGAATCCTCACACCTGCAAACACACTCTACCAGGTCATTGCAAACAGGCCTGCTTTACTAG  1405
            .|||||.|||||.||.||.||||||.|.|||||||||||.|||||||||||||||||||||||||||||.||||
Sbjct 1332  CGCTGAACCACCTCGGATTCTCACATCAGCAAACACACTGTACCAGGTCATTGCAAACAGGCCTGCTTTGCTAG  1405

Query 1406  ACTGTGCCTTCTTTGGGTCTCCTCTCCCAACCATCGAGTGGTTTAAAGGAGCTAAAGGAAGTGCTCTTCATGAA  1479
            |.||||||||||||||.||||||.|.||.|||||.||||||||||||||..||||||||||.||||||||||||
Sbjct 1406  ATTGTGCCTTCTTTGGATCTCCTATGCCTACCATTGAGTGGTTTAAAGGCACTAAAGGAAGCGCTCTTCATGAA  1479

Query 1480  GATATTTATGTTTTACATGAAAATGGAACTTTGGAAATTCCTGTGGCCCAAAAGGACAGTACAGGAACTTATAC  1553
            ||.|||||||||||.|||||.||||||||.||.||||||||.||||||||||||||.||||||||.||.|||||
Sbjct 1480  GACATTTATGTTTTGCATGATAATGGAACATTAGAAATTCCCGTGGCCCAAAAGGATAGTACAGGGACGTATAC  1553

Query 1554  GTGTGTTGCAAGGAATAAATTAGGGATGGCAAAGAATGAAGTTCACTTAGAAATCAAAGATGCTACATGGATCG  1627
            .|||||.|||.||||||||.||||||||||||||||||||||||||||.||||||||||||.|.||..|||||.
Sbjct 1554  TTGTGTCGCACGGAATAAACTAGGGATGGCAAAGAATGAAGTTCACTTGGAAATCAAAGATCCAACCAGGATCA  1627

Query 1628  TTAAACAGCCCGAATATGCAGTTGTGCAAAGAGGGAGCATGGTGTCCTTTGAATGCAAAGTGAAACATGATCAC  1701
            |||||||.||.||.||||||||.||.||.||.|||||||.|||||||||||||||||.||||||||||||.|||
Sbjct 1628  TTAAACAACCTGAGTATGCAGTCGTCCAGAGGGGGAGCAAGGTGTCCTTTGAATGCAGAGTGAAACATGACCAC  1701

Query 1702  ACCTT-ATCCCTCACTGTCCTGTGGCTGAAGGACAACAGGGAACTGCCCAGTGATGAAAGGTTCACTGTTGACA  1774
            ||||| ||||| |||..|..||||||||||||||||..|.||.|||||||.|||||||||||||.|...|||||
Sbjct 1702  ACCTTAATCCC-CACCATTATGTGGCTGAAGGACAATGGAGAGCTGCCCAATGATGAAAGGTTCTCCACTGACA  1774

Query 1775  AGGATCATCTAGTGGTAGCTGATGTCA---GTGACGATGACAGCGGGACCTACACGTGTGTGGCCAACACCACT  1845
            ||||||||||.||||||.|||||||.|   .||||||||   ||||.||||||||||||..|||||||||.||.
Sbjct 1775  AGGATCATCTGGTGGTATCTGATGTAAAGGATGACGATG---GCGGAACCTACACGTGTACGGCCAACACAACG  1845

Query 1846  CTGGACAGCGTCTCCGCCAGCGCTGTGCTTAGCGTTGT------------------------------TGATGT  1889
            ||||||||.|..||.||||||||||||||.||.|||||                              .|||||
Sbjct 1846  CTGGACAGTGCTTCGGCCAGCGCTGTGCTCAGGGTTGTCGCTCCTACTCCAACTCCAGCCCCCATTTACGATGT  1919

Query 1890  CCCAAATCCTCCCTTTGACTTAGAACTGACAGATCAACTTGACAAAAGTGTTCAGCTGTCATGGACCCCAGGCG  1963
            |||.||||||||||||||.||||||.||||..||||||||||||||||||||||||||.|||||||||||||||
Sbjct 1920  CCCGAATCCTCCCTTTGATTTAGAATTGACCAATCAACTTGACAAAAGTGTTCAGCTGACATGGACCCCAGGCG  1993

Query 1964  ATGACAACAATAGCCCCATTACAAAATTCATCATCGAATATGAAGATGCAATGCACAAGCCAGGGCTGTGGCAC  2037
            |.||||||||||||||||||||||||||||||||.||.|||||||||||||||||..|..||||||||||||.|
Sbjct 1994  ACGACAACAATAGCCCCATTACAAAATTCATCATTGAGTATGAAGATGCAATGCATGATGCAGGGCTGTGGCGC  2067

Query 2038  CACCAAACTGAAGTTTCTGGAACACAGACCACAGCCCAGCTGAAGCTGTCTCCTTACGTGAACTACTCCTTCCG  2111
            |||||..|||||||||||||||||||||||||||||||.||||||||||||||.||.|||||||||||||||||
Sbjct 2068  CACCAGGCTGAAGTTTCTGGAACACAGACCACAGCCCAACTGAAGCTGTCTCCCTATGTGAACTACTCCTTCCG  2141

Query 2112  CGTGATGGCAGTGAACAGCATTGGGAAGAGCTTGCCCAGCGAGGCCTCTGAGCAGTATTTGACGAAAGCCTCAG  2185
            .||.|||||||.||||||||||||||..||..||||.||||||||.||.|||||||||.|.||.||||||.|||
Sbjct 2142  TGTCATGGCAGAGAACAGCATTGGGAGAAGTATGCCGAGCGAGGCATCCGAGCAGTATCTTACAAAAGCCGCAG  2215

Query 2186  AACCAGATAAAAACCCCACAGCTGTGGAAGGACT-GGGATCAGAGCCTGATAATTTGGTGATTACGTGGAAGCC  2258
            ||||||||.|.||.||||..|||||||||||||| |||| |||||||.||.||.|||||||||||.||||||||
Sbjct 2216  AACCAGATCAGAATCCCATGGCTGTGGAAGGACTAGGGA-CAGAGCCGGACAACTTGGTGATTACATGGAAGCC  2288

Query 2259  CTTGAATGGTTTCGAATCTAATGGGCCAGGCCTTCAG-ACAA---GTACTGCCTCTTCT---------------  2313
            |.||||||||||..||||.||||||||.|||||.||| ||||   |..|||.|.|  |.               
Sbjct 2289  CCTGAATGGTTTTCAATCGAATGGGCCTGGCCTCCAGTACAAAGTGAGCTGGCGC--CAGAAAGATGGTGACGA  2360

Query 2314  --------------------------------------------------------------------------  2313
                                                                                      
Sbjct 2361  TGAGTGGACGTCTGTGGTTGTGGCCAATGTATCCAAATACATTGTTTCTGGCACACCAACCTTTGTCCCATACC  2434

Query 2314  --------------------------------------------------------------------------  2313
                                                                                      
Sbjct 2435  TGATAAAAGTTCAAGCTCTGAATGATGTGGGGTTTGCACCAGAGCCAGCTGCAGTCATGGGGCATTCTGGAGAA  2508

Query 2314  --------------------------------------------------------------------------  2313
                                                                                      
Sbjct 2509  GACCTTCCAATGGTGGCTCCTGGAAATGTTCGCGTCAGCGTGGTGAACAGTACGCTGGCAGAGGTGCACTGGGA  2582

Query 2314  --------------------------------------------------------------------------  2313
                                                                                      
Sbjct 2583  CCCAGTTCCTCCCAAGAGTGTCCGAGGACACTTACAAGGCTACCGGATTTACTACTGGAAGACCCAGAGCTCCT  2656

Query 2314  --------------------------------------------------------------------------  2313
                                                                                      
Sbjct 2657  CTAAAAGAAACAGGCGCCACATTGAGAAGAAGATCCTCACCTTCCAGGGCACCAAGACTCACGGCATGCTGCCA  2730

Query 2314  --------------------------------------------------------------------------  2313
                                                                                      
Sbjct 2731  GGGCTGCAGCCATACAGTCACTATGCCCTCAACGTCCGAGTGGTCAACGGGAAAGGGGAGGGCCCAGCCAGCAC  2804

Query 2314  --------------------------------------------------------------------------  2313
                                                                                      
Sbjct 2805  GGACAGAGGCTTCCATACACCGGAGGGAGTCCCTAGTGCTCCCTCATCTTTGAAAATTGTTAATCCCACACTGG  2878

Query 2314  --------------------------------------------------------------------------  2313
                                                                                      
Sbjct 2879  ACTCCCTCACTTTGGAATGGGACCCCCCAAGCCACCCAAATGGCATCCTGACTGAGTACATCTTACAATATCAG  2952

Query 2314  --------------------------------------------------------------------------  2313
                                                                                      
Sbjct 2953  CCAATTAACAGCACACATGAGCTAGGCCCTCTGGTAGATTTAAAAATTCCTGCCAACAAGACCCGCTGGACTTT  3026

Query 2314  --------------------------------------------------------------------------  2313
                                                                                      
Sbjct 3027  GAAAAATTTAAATTTCAGCACTCGGTACAAGTTCTATTTCTATGCACAGACATCAGTGGGGCCAGGCAGTCAGA  3100

Query 2314  --------------------------------------------------------------------------  2313
                                                                                      
Sbjct 3101  TCACAGAGGAAGCGATAACGACTGTGGACGAAGCTGGTATTCCTCCACCTGATGTAGGTGCAGGCAAAGCAATG  3174

Query 2314  --------------------------------------------------------------------------  2313
                                                                                      
Sbjct 3175  GCAAGCCGGCAAGTGGATATCGCGACCCAAGGCTGGTTCATAGGTCTAATGTGCGCTGTTGCTCTCCTCATCTT  3248

Query 2314  --------------------------------------------------------------------------  2313
                                                                                      
Sbjct 3249  AATTTTGCTGATTGTTTGCTTCATCAGAAGAAACAAAGGTGGTAAATACCCAGTTAAAGAAAAGGAGGATGCTC  3322

Query 2314  --------------------------------------------------------------------------  2313
                                                                                      
Sbjct 3323  ATGCAGACCCTGAAATCCAGCCCATGAAGGAAGATGATGGGACGTTTGGAGAATACAGGTCTTTTGAAAGTGAT  3396

Query 2314  --------------------------------------------------------------------------  2313
                                                                                      
Sbjct 3397  GCAGAAGATCACAAGCCTTTGAAAAAAGGAAGTCGAACACCTTCAGACAGGACTGTGAAAAAAGAAGATAGCGA  3470

Query 2314  --------------------------------------------------------------------------  2313
                                                                                      
Sbjct 3471  TGATAGTCTGGTTGACTATGGAGAGGGGGTGAACGGCCAATTCAACGAGGATGGCTCCTTTATTGGCCAATACA  3544

Query 2314  --------------------------------------------------------------------------  2313
                                                                                      
Sbjct 3545  GTGGTAAGAAAGAGAAAGAGCCAGCAGAGGGAAATGAAAGCTCAGAGGCCCCTTCTCCTGTCAACGCAATGAAC  3618

Query 2314  ---------  2313
                     
Sbjct 3619  TCCTTTGTT  3627

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