Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_14033
Subject:
NM_001134382.3
Aligned Length:
3342
Identities:
2441
Gaps:
900

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGGCTTGCAGAAGACGCTATTTCGTCGAGGGCGAGGCCCCCAGCAGTGAGACTGGCACATCCCTGGACAGCCC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CTCAGCCTACCCCCAGGGCCCCTTGGTGCCCGGTTCCAGCCTGAGCCCGGATCACTACGAGCACACGTCAGTGG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GAGCCTATGGGCTGTACTCGGGGCCGCCGGGGCAACAGCAGCGCACGCGGAGGCCCAAGCTGCAGCACTCGACC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  TCCATCCTGCGCAAGCAGGCTGAGGAGGAGGCCATCAAGCGCTCACGCTCACTCTCCGAGAGCTATGAGCTCTC  296

Query    1  ----------------------------ATGCTAGAACGAAAGTATGGGGGGCGCCTGGTAACCCGCCATGCGG  46
                                        ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  CTCGGACCTGCAGGACAAGCAGGTGGAGATGCTAGAACGAAAGTATGGGGGGCGCCTGGTAACCCGCCATGCGG  370

Query   47  CCCGCACCATCCAGACGGCGTTTCGCCAGTACCAGATGAACAAGAACTTCGAGCGCTTGCGCAGCTCCATGTCA  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  CCCGCACCATCCAGACGGCGTTTCGCCAGTACCAGATGAACAAGAACTTCGAGCGCTTGCGCAGCTCCATGTCA  444

Query  121  GAGAACCGCATGTCACGCCGGATTGTGCTGTCCAACATGAGGATGCAGTTCTCCTTTGAGGGGCCTGAGAAAGT  194
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  GAGAACCGCATGTCACGCCGGATTGTGCTGTCCAACATGAGGATGCAGTTCTCCTTTGAGGGGCCTGAGAAAGT  518

Query  195  GCACAGCTCCTACTTCGAGGGGAAGCAGGTCTCAGTGACTAACGACGGCTCCCAGCTGGGAGCCCTGGTGTCCC  268
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  GCACAGCTCCTACTTCGAGGGGAAGCAGGTCTCAGTGACTAACGACGGCTCCCAGCTGGGAGCCCTGGTGTCCC  592

Query  269  CTGAGTGTGGTGACCTCAGCGAGCCCACCACCCTCAAGTCTCCGGCCCCCTCCAGTGACTTTGCGGACGCCATC  342
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  CTGAGTGTGGTGACCTCAGCGAGCCCACCACCCTCAAGTCTCCGGCCCCCTCCAGTGACTTTGCGGACGCCATC  666

Query  343  ACCGAGCTGGAGGACGCCTTCTCTAGGCAAGTGAAATCACTGGCCGAGTCCATCGACGATGCCCTCAACTGCCG  416
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  ACCGAGCTGGAGGACGCCTTCTCTAGGCAAGTGAAATCACTGGCCGAGTCCATCGACGATGCCCTCAACTGCCG  740

Query  417  CAGCCTGCACACTGAGGAGGCACCGGCCCTGGATGCGGCGCGGGCCCGGGACACCGAACCCCAGACAGCCCTGC  490
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  CAGCCTGCACACTGAGGAGGCACCGGCCCTGGATGCGGCGCGGGCCCGGGACACCGAACCCCAGACAGCCCTGC  814

Query  491  ACGGCATGGACCACCGCAAACTGGACGAGATGACGGCCTCGTACAGTGATGTCACCCTGTACATCGATGAGGAG  564
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  ACGGCATGGACCACCGCAAACTGGACGAGATGACGGCCTCGTACAGTGATGTCACCCTGTACATCGATGAGGAG  888

Query  565  GAGCTGTCGCCCCCTCTGCCCCTCTCGCAGGCAGGGGACCGGCCGTCCAGCACCGAGTCGGACCTGCGGCTACG  638
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  GAGCTGTCGCCCCCTCTGCCCCTCTCGCAGGCAGGGGACCGGCCGTCCAGCACCGAGTCGGACCTGCGGCTACG  962

Query  639  GGCTGGGGGCGCAGCCCCAGACTACTGGGCCCTGGCCCACAAAGAGGACAAGGCTGACACGGACACGAGCTGCC  712
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  GGCTGGGGGCGCAGCCCCAGACTACTGGGCCCTGGCCCACAAAGAGGACAAGGCTGACACGGACACGAGCTGCC  1036

Query  713  GGAGCACGCCGTCGCTGGAGCGGCAGGNGCAGCGGCTGCGGGTGGAGCATCTGCCGCTGCTCACCATCGAGCCA  786
            |||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  GGAGCACGCCGTCGCTGGAGCGGCAGGAGCAGCGGCTGCGGGTGGAGCATCTGCCGCTGCTCACCATCGAGCCA  1110

Query  787  CCCAGCGACAGCTCTGTGGACCTTAGTGACCGCTCGGAGCGGGGGTCACTCAAGAGGCAGAGTGCTTACGAGCG  860
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  CCCAGCGACAGCTCTGTGGACCTTAGTGACCGCTCGGAGCGGGGGTCACTCAAGAGGCAGAGTGCTTACGAGCG  1184

Query  861  CAGCCTTGGCGGGCAGCAGGGCAGTCCCAAGCATGGTCCCCACAGCGGCGCCCCCAAGAGCCTCCCCCGGGAGG  934
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  CAGCCTTGGCGGGCAGCAGGGCAGTCCCAAGCATGGTCCCCACAGCGGCGCCCCCAAGAGCCTCCCCCGGGAGG  1258

Query  935  AGCCTGAGTTGCGGCCCCGGCCCCCCAGGCCCCTGGACAGCCACTTGGCCATCAATGGCTCAGCCAACCGGCAG  1008
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  AGCCTGAGTTGCGGCCCCGGCCCCCCAGGCCCCTGGACAGCCACTTGGCCATCAATGGCTCAGCCAACCGGCAG  1332

Query 1009  AGCAAGTCTGAGTCGGACTACTCAGACGGTGACAATGACAGCATCAACAGCACGTCCAACTCCAACGATACCAT  1082
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  AGCAAGTCTGAGTCGGACTACTCAGACGGTGACAATGACAGCATCAACAGCACGTCCAACTCCAACGATACCAT  1406

Query 1083  CAACTGCAGCTCCGAGTCATCGTCCCGTGACAGCCTGCGGGAGCAGACGCTCAGCAAGCAGACCTACCACAAGG  1156
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  CAACTGCAGCTCCGAGTCATCGTCCCGTGACAGCCTGCGGGAGCAGACGCTCAGCAAGCAGACCTACCACAAGG  1480

Query 1157  AGGCCCGCAACAGCTGGGACTCGCCTGCCTTTAGCAACGATGTCATCCGCAAGAGGCACTACCGCATCGGCCTG  1230
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  AGGCCCGCAACAGCTGGGACTCGCCTGCCTTTAGCAACGATGTCATCCGCAAGAGGCACTACCGCATCGGCCTG  1554

Query 1231  AACCTCTTCAACAAGAAGCCTGAGAAGGGAGTCCAGTACCTCATCGAGCGTGGCTTTGTGCCCGACACGCCCGT  1304
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555  AACCTCTTCAACAAGAAGCCTGAGAAGGGAGTCCAGTACCTCATCGAGCGTGGCTTTGTGCCCGACACGCCCGT  1628

Query 1305  CGGGGTGGCCCACTTCCTGCTGCAGCGCAAGGGCCTCAGCCGGCAGATGATCGGCGAGTTCCTGGGCAACCGGC  1378
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629  CGGGGTGGCCCACTTCCTGCTGCAGCGCAAGGGCCTCAGCCGGCAGATGATCGGCGAGTTCCTGGGCAACCGGC  1702

Query 1379  AGAAGCAGTTCAACCGTGACGTGCTCGACTGCGTCGTGGACGAGATGGACTTCTCTACCATGGAGCTGGATGAG  1452
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703  AGAAGCAGTTCAACCGTGACGTGCTCGACTGCGTCGTGGACGAGATGGACTTCTCTACCATGGAGCTGGATGAG  1776

Query 1453  GCCCTCAGGAAATTCCAGGCGCACATCCGTGTCCAAGGGGAGGCTCAGAAAGTGGAGCGGCTCATAGAGGCGTT  1526
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777  GCCCTCAGGAAATTCCAGGCGCACATCCGTGTCCAAGGGGAGGCTCAGAAAGTGGAGCGGCTCATAGAGGCGTT  1850

Query 1527  CAGCCAGCGCTACTGCATCTGCAACCCTGGGGTGGTGCGGCAATTCCGGAACCCAGACACCATTTTCATCCTGG  1600
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851  CAGCCAGCGCTACTGCATCTGCAACCCTGGGGTGGTGCGGCAATTCCGGAACCCAGACACCATTTTCATCCTGG  1924

Query 1601  CCTTCGCCATCATCCTGCTGAACACCGACATGTACAGCCCCAATGTCAAGCCCGAGCGGAAAATGAAGCTAGAG  1674
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925  CCTTCGCCATCATCCTGCTGAACACCGACATGTACAGCCCCAATGTCAAGCCCGAGCGGAAAATGAAGCTAGAG  1998

Query 1675  GACTTCATCAAGAACCTCCGAGGTGTGGACGATGGTGAGGACATTCCCCGTGAGATGCTGATGGGGATCTATGA  1748
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999  GACTTCATCAAGAACCTCCGAGGTGTGGACGATGGTGAGGACATTCCCCGTGAGATGCTGATGGGGATCTATGA  2072

Query 1749  ACGGATCCGTAAGCGAGAGCTAAAGACCAATGAGGACCATGTGTCCCAGGTGCAGAAGGTGGAGAAGCTCATTG  1822
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073  ACGGATCCGTAAGCGAGAGCTAAAGACCAATGAGGACCATGTGTCCCAGGTGCAGAAGGTGGAGAAGCTCATTG  2146

Query 1823  TGGGGAAAAAGCCGATCGGATCCCTGCATCCCGGGCTCGGCTGTGTGCTCTCTCTGCCCCACCGTCGGTTGGTC  1896
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2147  TGGGGAAAAAGCCGATCGGATCCCTGCATCCCGGGCTCGGCTGTGTGCTCTCTCTGCCCCACCGTCGGTTGGTC  2220

Query 1897  TGCTACTGCCGGCTCTTTGAGGTTCCAGACCCAAACAAGCCCCAGAAACTCGGACTACACCAGCGAGAAATCTT  1970
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2221  TGCTACTGCCGGCTCTTTGAGGTTCCAGACCCAAACAAGCCCCAGAAACTCGGACTACACCAGCGAGAAATCTT  2294

Query 1971  CCTGTTCAACGACCTCCTGGTGGTCACCAAGATCTTCCAGAAGAAGAAGAACTCGGTGACGTACAGCTTCCGAC  2044
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2295  CCTGTTCAACGACCTCCTGGTGGTCACCAAGATCTTCCAGAAGAAGAAGAACTCGGTGACGTACAGCTTCCGAC  2368

Query 2045  AGTCCTTCTCCTTGTACGGCATGCAGGTCCTGCTCTTCGAGAACCAGTACTACCCCAATGGCATCCGGCTCACC  2118
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2369  AGTCCTTCTCCTTGTACGGCATGCAGGTCCTGCTCTTCGAGAACCAGTACTACCCCAATGGCATCCGGCTCACC  2442

Query 2119  TCGTCTGTCCCCGGAGCAGATATCAAAGTGTTAATAAACTTCAACGCCCCCAACCCTCAAGACCGGAAGAAATT  2192
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2443  TCGTCTGTCCCCGGAGCAGATATCAAAGTGTTAATAAACTTCAACGCCCCCAACCCTCAAGACCGGAAGAAATT  2516

Query 2193  CACCGATGACCTGCGGGAGTCCATTGCGGAAGTCCAAGAGATGGAGAAGCACAGGATAGAGTCGGAGCTCGAGA  2266
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2517  CACCGATGACCTGCGGGAGTCCATTGCGGAAGTCCAAGAGATGGAGAAGCACAGGATAGAGTCGGAGCTCGAGA  2590

Query 2267  AGCAGAAAGGCGTCGTGCGGCCCAGCATGTCCCAGTGCTCTAGCCTCAAAAAGGAGTCGGGCAACGGAACACTG  2340
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2591  AGCAGAAAGGCGTCGTGCGGCCCAGCATGTCCCAGTGCTCTAGCCTCAAAAAGGAGTCGGGCAACGGAACACTG  2664

Query 2341  AGCCGGGCCTGCCTGGACGACAGCTATGCCAGCGGTGAGGGCCTCAAGCGCAGCGCCCTCAGCAGCTCCCTGCG  2414
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2665  AGCCGGGCCTGCCTGGACGACAGCTATGCCAGCGGTGAGGGCCTCAAGCGCAGCGCCCTCAGCAGCTCCCTGCG  2738

Query 2415  GGACCTCTCGGAAGCCG--------------------------------------------------GGGTCCA  2438
            |||||||||||||||||                                                  |||||||
Sbjct 2739  GGACCTCTCGGAAGCCGGGAAGCGAGGGCGTCGCAGCAGTGCGGGATCGCTAGAGAGCAATGTGGAAGGGTCCA  2812

Query 2439  TCAT----------------------------------------------------------------------  2442
            ||||                                                                      
Sbjct 2813  TCATTAGCAGTCCTCACATGCGCCGGAGAGCTACATCAACACGAGAGTGTCCATCTCGCCCACACCAGACTATG  2886

Query 2443  --------------------------------------------------------------------------  2442
                                                                                      
Sbjct 2887  CCCAACTCATCTTCCCTCCTGGGCTCCTTATTCGGGAGCAAGAGAGGGAAGCCCCCTCCCCAGGCCCACCTGCC  2960

Query 2443  --------------------------------------------------------------------------  2442
                                                                                      
Sbjct 2961  CTCAGCCCCAGCCCTGCCACCCCCCCACCCACCGGTGGTCCTGCCTCACTTGCAGCACTCTGTGGCTGGCCACC  3034

Query 2443  --------------------------------------------------------------------------  2442
                                                                                      
Sbjct 3035  ACCTGGGGCCCCCAGAGGGGCTGCCGCAGGCCGCCATGCACGGGCATCACACCCAGTACTGCCACATGCAGAAC  3108

Query 2443  --------------------------------------------------------------------------  2442
                                                                                      
Sbjct 3109  CCTCCCCCGTACCACCATCACCACCACCACCACCCACCCCAGCACATCCAGCACGCACACCAGTACCACCACGG  3182

Query 2443  --------------------------------------------------------------------------  2442
                                                                                      
Sbjct 3183  CCCCCATGGGGGCCACCCAGCCTACGGGGCCCATGCCCACGGCCACCCGCCGCTGCCCTCGGCCCACGTGGGGC  3256

Query 2443  --------------------------------------------------------------------------  2442
                                                                                      
Sbjct 3257  ACACAGTGCACCACCATGGGCAGCCCCCTGCCCCGCCGCCCCCCACCAGCAGCAAGGCCAAACCCAGCGGCATC  3330

Query 2443  ------------  2442
                        
Sbjct 3331  AGCACAATTGTG  3342

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