Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_14163
- Subject:
- XR_001781875.1
- Aligned Length:
- 5732
- Identities:
- 850
- Gaps:
- 4821
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CCTTCCGCTCGCCCGCGCGGCAGCGGGTCTCAAGAGCCGAGCGCTTTGCAAGGGCCTTCGCGGGTTGTGGCGGC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GCCGGGGTCGGTGGAAGAAGAAAGGTGCCACTTTGGCATGAAGATAGACTCACTTAGACGTCAATCTTTTAAGC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TGAGTGCATTGTGATTTCCAATAATTGAGGCAGTGGTTCTAAAAGCTGTCTACATTAATGAAAAGAGCAATGTG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GCCAGCTTGACTAAGCCGCCAGTGTGTACAGCGCGGGCAGGACGACACCGGGTCTCGACGGACTTGTGCATGTT 296
Query 1 --------------------------------------------------------------------ATGGAG 6
||||||
Sbjct 297 AGCAGTATAGATTTATGTAAGGTGGTTTAAAACTCTGGTCTTTTAAAGTAGTCTTAACTGCTCATAATATGGAG 370
Query 7 ACAGATGAGAGCCCCTCTCCGCTCCCGTGTGGGCCCGCAGGAGAAGCGGTGATGGAGAGCCGAGCTCGCCCCTT 80
|||.|||||||.||||||||.||||||.|||.||||||||||||||||.|||||||||.|||||||.|||||||
Sbjct 371 ACATATGAGAGTCCCTCTCCTCTCCCGCGTGAGCCCGCAGGAGAAGCGATGATGGAGAACCGAGCTTGCCCCTT 444
Query 81 CCAAGCGCTGCCCCGTGAGCAGTCTCCACCACCTCCCCTGCAAACGTCCAGTGGTGCAGAGGTAATGGACGTTG 154
|||||.||||||||.|||.||||||||||||||||||||||||||||||||||.||||||||||||||||||||
Sbjct 445 CCAAGTGCTGCCCCATGAACAGTCTCCACCACCTCCCCTGCAAACGTCCAGTGATGCAGAGGTAATGGACGTTG 518
Query 155 GCTCTGGTGGTGATGGACAGTCCGAACTCCCTGCTGAGGACCCCTTCAACTTCTACGGAGCTTCTCTTCTCTCC 228
|||||||||||||||||||||||||||..|||||.||.|||||.||||||||||||||||||||||||||||||
Sbjct 519 GCTCTGGTGGTGATGGACAGTCCGAACCTCCTGCCGACGACCCATTCAACTTCTACGGAGCTTCTCTTCTCTCC 592
Query 229 AAAGGATCCTTCTCTAAGGGCCGCCTCCTCATAGACCCGAACTGTAGTGGCCACAGCCCGCGCACCGCCCGGCA 302
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||
Sbjct 593 AAAGGATCCTTCTCTAAGGGCCGCCTCCTCATAGACCCGAACTGTAGTGGCCACAGCCCGCGCACTGCCCGGCA 666
Query 303 CGCACCTGCGGTCCGGAAGTTCTCCCCTGACCTTAAGTTGCTTAAGGATGTAAAGATTAGCGTGAGCTTTACCG 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|
Sbjct 667 CGCACCTGCGGTCCGGAAGTTCTCCCCTGACCTTAAGTTGCTTAAGGATGTAAAGATTAGCGTGAGCTTTACTG 740
Query 377 AGAGCTGCAGGAGTAAGGACAGGAAGGTGCTGTACACAGGAGCAGAGCGCGACGTGCGGGCGGAGTGCGGTCTG 450
||||||||||||||||||||||||||||||||||||||||||.|||.|||..|...|||.|.|||||.||.|.|
Sbjct 741 AGAGCTGCAGGAGTAAGGACAGGAAGGTGCTGTACACAGGAGTAGAACGCAGCACTCGGCCTGAGTGTGGCCAG 814
Query 451 CTCCTTAGCCCTGTCAGTGGGGACGTGCATGCTTGTCCCTTTGGCGGGAGTGTTGGTGACGGGGTAGGCATAGG 524
||||||||.||||||||||||||||||||||||||||||||||||||||||||||||.|.|||||||||.||||
Sbjct 815 CTCCTTAGTCCTGTCAGTGGGGACGTGCATGCTTGTCCCTTTGGCGGGAGTGTTGGTAATGGGGTAGGCCTAGG 888
Query 525 GGGTGAGAGTGCTGATAAGAAGGATGAGGAGAATGAGCTGGATCAGGAAAAGAGAGTGGAGTATGCAGTGCTCG 598
||||||||||||.|||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 GGGTGAGAGTGCAGATAAGAAGGATGAGGAAAATGAGCTGGATCAGGAAAAGAGAGTGGAGTATGCAGTGCTCG 962
Query 599 ATGAGTTAGAAGATTTTACTGACAATTTGGAGCTAGATGAAGAAGGAGCAGGCAGGTTCACGGCTAAAGCAATC 672
|||||||||||||||||||||||||||||||||||||||||||||||.|||||.||||||||||||||||||||
Sbjct 963 ATGAGTTAGAAGATTTTACTGACAATTTGGAGCTAGATGAAGAAGGAACAGGCGGGTTCACGGCTAAAGCAATC 1036
Query 673 GTTCAGAGAGACAGAGTGGATGAAGAGGCCTTGAATTTCCCCTACGAGGATGACTTTGACAACGATGTGGATGC 746
|||||.|||||||||||||||||||||||||||||||||.||||.|||||||||||||||||.||||||||.||
Sbjct 1037 GTTCAAAGAGACAGAGTGGATGAAGAGGCCTTGAATTTCTCCTATGAGGATGACTTTGACAATGATGTGGACGC 1110
Query 747 TCTGCTGGAAGAAGGCCTTTGTGCCCCCAAAAAGAGGCGAACAGAGGAAAAATATGGCGGAGACAGCGACCATC 820
|.|.||.||||||||.||.|||||.|||||.||||||||||..|||||||||||||||||||||||.||.||||
Sbjct 1111 TTTACTAGAAGAAGGTCTCTGTGCTCCCAAGAAGAGGCGAATGGAGGAAAAATATGGCGGAGACAGTGATCATC 1184
Query 821 CGTCCGATGGAGAGACAAGTGTGCAGCCGATGATGACCAAGATTAAAACAGTGCTCAAAAGTCGTGGCCGCCCA 894
|.||.|||||||||||||||||.|||||.|||||||||||||||||||||||||||||||||||||||||.|||
Sbjct 1185 CATCTGATGGAGAGACAAGTGTACAGCCAATGATGACCAAGATTAAAACAGTGCTCAAAAGTCGTGGCCGTCCA 1258
Query 895 CCTACAGAGCC--TGTTCTG------------------------------------------------------ 912
||||||||||| || .|||
Sbjct 1259 CCTACAGAGCCATTG-CCTGATGGATGGATCATGACTTTTCATAATTCTGGAGTCCCTGTATACCTGCACAGAG 1331
Query 913 -------------------------------------------------------------------------- 912
Sbjct 1332 AGTCTCGAGTGGTCACTTGGTCCAGACCCTACTTCTTGGGAACAGGAAGCATACGGAAACATGATCCTCCTCTA 1405
Query 913 -------------------------------------------------------------------------- 912
Sbjct 1406 AGCAGTATCCCCTGCCTACATTATAAGAAAATGAAGGACAATGAGGAACGAGAACAAAACTGTGATCTTGCCCC 1479
Query 913 -------------------------------------------------------------------------- 912
Sbjct 1480 CAGTGGAGAGGTGTCACCTGTCAAGCCCTTGGGTCGGTCTGCAGAGTTGGATTTCCCTCTGGAAGAGCCTGACT 1553
Query 913 -------------------------------------------------------------------------- 912
Sbjct 1554 CCATGGGTGGAGACTCAGGGTCCATGGATGAGAAGGACCCATTGGGGGCTGAGGCAGCCGCTGGAGCCCTGGGA 1627
Query 913 -------------------------------------------------------------------------- 912
Sbjct 1628 CAAGTGAAGGCTAAAGTTGAGGTGTGCAAAGATGAATCAGTTGATCTGGAGGAATTTCGTAATTACCTTGAGAA 1701
Query 913 -------------------------------------------------------------------------- 912
Sbjct 1702 GCGTTTTGACTTTGAACAAGTAACTGTGAAAAAATTCAGGACTTGGGCTGAGCGGCGTCAGTTCAACCGTGAGA 1775
Query 913 -------------------------------------------------------------------------- 912
Sbjct 1776 TGAAGCGGAAGCAGGCCGAGTCAGAGAGGCCCATCCTGCCAGCCAACCAGAAGCTGATCACTCTATCTGTACAA 1849
Query 913 -------------------------------------------------------------------------- 912
Sbjct 1850 GATGCACCCACAAAGAAAGAGTTTGTCATCAATCCCAATGGGAAGTCTGAGGTTTGCATCCTGCACGAATACAT 1923
Query 913 -------------------------------------------------------------------------- 912
Sbjct 1924 GCAGCGTGTCCTCAAGGTCCGCCCTGTTTATAATTTCTTTGAATGTGAGAATCCAAGTGAGCCTTTTGGTGCCT 1997
Query 913 -------------------------------------------------------------------------- 912
Sbjct 1998 CCGTGACCATTGATGGTGTGACTTACGGATCTGGAACTGCAAGCAGCAAAAAACTTGCGAAGAATAAAGCTGCC 2071
Query 913 -------------------------------------------------------------------------- 912
Sbjct 2072 CGAGCCACCCTGGAAATTCTCATCCCTGACTTTGTTAAACAGACCTCTGAGGAGAAGCCTAAAGACAGTGAAGA 2145
Query 913 -------------------------------------------------------------------------- 912
Sbjct 2146 ACTGGAGATTCTCTTCTGCTTTCAAGAAGCTCTGTTTGGCCTTCAGTTGGATGAGTCTACAAACAGATGCTATT 2219
Query 913 -------------------------------------------------------------------------- 912
Sbjct 2220 TTAACCACATCAGTATTGAGGATTCACGAGTCTATGAGCTGACAAGCAAGGCTGGGCTGTTGTCTCCATATCAG 2293
Query 913 -------------------------------------------------------------------------- 912
Sbjct 2294 ATCCTCCATGAGTGCCTTAAAAGAAACCATGGAATGGGTGACACATCCATCAAGTTTGAAGTGGTTCCTGGGAA 2367
Query 913 -------------------------------------------------------------------------- 912
Sbjct 2368 AAACCAGAAGAGTGAATATGTTATGGCATGCGGCAAACACACAGTGCGCGGGTGGTGTAAGAATAAACGAGTTG 2441
Query 913 -------------------------------------------------------------------------- 912
Sbjct 2442 GGAAACAATTAGCATCTCAGAAAATCCTTCAGCTACTGCACCCACATGTCAAGAACTGGGGTTCCTTACTACGC 2515
Query 913 -------------------------------------------------------------------------- 912
Sbjct 2516 ATGTATGGTCGTGAGAGCAGCAAAATGGTCAAGCAGGTAACCAGACTGTCACATCTTTTGGCAGTTGCTCTGCT 2589
Query 913 -------------------------------------------------------------------------- 912
Sbjct 2590 TCCCTGTTTTTGCTTTGGCTTGGGGCTTGCTGTCAAGGTCAGGCTTGGCAGCACTACTTTTAATTATGACTGTC 2663
Query 913 -------------------------------------------------------------------------- 912
Sbjct 2664 TCTGCTGTGCTGTGCTGTGCTATGGAAGTGATTGTGCAAGCCAAGGGTGGGAGTACCCAAGCCACATTTTCCTC 2737
Query 913 -------------------------------------------------------------------------- 912
Sbjct 2738 ATGAATCTGCCAGGCAGTTAAGTATGAACCATTAGGGAGCAGTCCTAGACTATCAGGCCTGACACAAACCAGAC 2811
Query 913 -------------------------------------------------------------------------- 912
Sbjct 2812 AGTAGATGCAGGCAGTGAACACTACCTGATGTTGAATTGTGTGAAGGCTTGCAAACCAGCCCTTTGGCAGTCCT 2885
Query 913 -------------------------------------------------------------------------- 912
Sbjct 2886 CAAGACTGTATCCTTGTTTAGTTGAAGGTTCTCAGTGACTTAAAGAATATGGGTATTATCTGTTTTGTTTCTGA 2959
Query 913 -------------------------------------------------------------------------- 912
Sbjct 2960 GGGTTTTGCCCAGATCTCAGAATTTAAATAAGTCTAAACCTAATGGGTATGGGAAGTAATGGGAAATTATGTTG 3033
Query 913 -------------------------------------------------------------------------- 912
Sbjct 3034 GGTAGTGATGGAACTCAGCTGTATCACAAGCATTTTTTTACATTTTCCCCTAATATATGCCGAAACTACCTGGA 3107
Query 913 -------------------------------------------------------------------------- 912
Sbjct 3108 TCATCAGGATCTCATTGTTTAAACGAGTACAGGTAGAGACCCTGAAGTCTGTGCTCTGGACCCTTGAGCTACCC 3181
Query 913 -------------------------------------------------------------------------- 912
Sbjct 3182 TGCCTTGAGCTGAGCTAATAGTCTAGAGCAACGAAGCACCCCTTCAGATTCTCCAAGACTCAAACTTGTCCCTG 3255
Query 913 -------------------------------------------------------------------------- 912
Sbjct 3256 TCCTTGCTCAAGGCAGGAGGAGTCCAGGAGCCACATGGAGAACGTAAATAATATAAGAGTACTTCTTTTTTCTG 3329
Query 913 -------------------------------------------------------------------------- 912
Sbjct 3330 ATTCCTCTCCCTCCTACTGCTGGGGATCATACATGGGGCTTTGTACAGGCCAAACAAGGACTGAGTTGCATCTT 3403
Query 913 -------------------------------------------------------------------------- 912
Sbjct 3404 CAGCCTGAAAAGAAGCATTTTTCATGAGTTGAAATGTAGGTACCGTGTAGGTACGTAGTCTGGGACTGAGACAG 3477
Query 913 -------------------------------------------------------------------------- 912
Sbjct 3478 AGGGAACGTTGCTGCAACCATGGACAGAGGTTTCCTTCAACTGGAGAGTGAATGGCCCTTGTCTGGCACAGGAG 3551
Query 913 -------------------------------------------------------------------------- 912
Sbjct 3552 TTCTGGCATTCTAAGACATAGTGAGCATCCTTACTGTGGCCTCCAAGCCAAGAAGGGAAGAGAACCAAAGAGAA 3625
Query 913 -------------------------------------------------------------------------- 912
Sbjct 3626 CAGCTGGGCAGACTGTTTTGGTTGTGTTATGTCTCAGTTGGCTTCAGCCACTGTCAGAGGGTTCCTGGCATAGT 3699
Query 913 -------------------------------------------------------------------------- 912
Sbjct 3700 GAGTACTTGACTTTCATACTCAGCTAGTAAACACACAGAGGTGTGATCATGGAGGAAGGAAGGAACTGTCTGGG 3773
Query 913 -------------------------------------------------------------------------- 912
Sbjct 3774 AGACCAGGGAGCACAGGGCTGTGCTTATACCCTATATTTATATGTCAGCTGCAAATGCTTTATCACAGGTAGGC 3847
Query 913 -------------------------------------------------------------------------- 912
Sbjct 3848 CACTGGTGTGGACTTGTGCCTTGCCAAGCCCTTGCACTCTTGATTTGGGTGGATACTGCTACTTGAGCATACTG 3921
Query 913 -------------------------------------------------------------------------- 912
Sbjct 3922 CTACTTGGCAGTTCTGAGAGCAGGCTTTGGGTCCCTAGGAGACCTCTGACAAGAGTGTGATAGAGCTACAGCAG 3995
Query 913 -------------------------------------------------------------------------- 912
Sbjct 3996 TATGCCAAGAAGAACAGGCCCAACCTTCACATCCTGAGCAAGCTACAAGAAGAGATGAAGAGGCTGGCTGCAGA 4069
Query 913 -------------------------------------------------------------------------- 912
Sbjct 4070 GCGGGAGGAGACTCGGAAGAAACCCAAGATGTCAATTGTAGCATCTGCCCAGCCTGGTGGTGAGCCCTTGTGCA 4143
Query 913 -------------------------------------------------------------------------- 912
Sbjct 4144 CAGTCGATGTATGAGGTAGGCAGCATGGGCCAACAGTGCTACCCAGGAGAGACCATCAGCCACACATCATCACT 4217
Query 913 -------------------------------------------------------------------------- 912
Sbjct 4218 CTGCAGCTCCAGGCCTCCAACCTAAGTTCCTTCCCTGTGGCAGGGTCTGGGCTCTGGCTCTGGCACATGGGGAC 4291
Query 913 -------------------------------------------------------------------------- 912
Sbjct 4292 AGCTGTGACTACACAGTACACATGCAAAGAAGCAGTTCTGGACAAGCTGCTCTCAATGTGACTGGATATACTTA 4365
Query 913 -------------------------------------------------------------------------- 912
Sbjct 4366 AGGATCAGTCATAAGTTAACTGCACAAGTGGAAGCTGATAGACAGCTGTAGATCCTGCTTGTATGTATCTGCTG 4439
Query 913 -------------------------------------------------------------------------- 912
Sbjct 4440 CGGACCGTTTTTATGAAGGTTTTCATTAATTTTAGTACACTATATGCACTGACAAGAAGTAATACTTCGTTGAT 4513
Query 913 -------------------------------------------------------------------------- 912
Sbjct 4514 AGATGAGATGACCAGGTTTTATAGCTTTGGCTGGCCTATGATGCCAGGTAGCCCCTTTGCTATGGTTCTTTCTG 4587
Query 913 -------------------------------------------------------------------------- 912
Sbjct 4588 GTGGAGCCACTGAGACTTGGTCAGAAGATGCAGGTATCCTGTCCTGTAGAATTACCTGCTTTGTGTGTTTTGCA 4661
Query 913 -------------------------------------------------------------------------- 912
Sbjct 4662 TTTTCTTCTGAAAAAGTTATAACAGAAAGGAATATTTCAGGCTATTTTGGCTTAAAATAAAACAAAATTTTAGC 4735
Query 913 -------------------------------------------------------------------------- 912
Sbjct 4736 ACCAGAAATACTCTTCCGAGATTGCAGTGAAGATACTGAGTGTTAGTCCGATTGATCCTTTTTCTTATGAAGTC 4809
Query 913 -------------------------------------------------------------------------- 912
Sbjct 4810 TTAATGTCCTAACAGCCGTCTTCTGGATACTGAAGCTTCCACCTTCGATAAACTTAGCAACAATTTTTTACAGA 4883
Query 913 -------------------------------------------------------------------------- 912
Sbjct 4884 GATTTTTGCACAACCAAGCCCATCTGTTCATCAATTTTTAAAGCTTTTATGATGTTTTAAAATTTGGAAAGAAA 4957
Query 913 -------------------------------------------------------------------------- 912
Sbjct 4958 CTTTTACAGTAAGAATGAAAGATGCATTTCAACAGATGAATATGCATAAATAGGGAACTGGCCTTCAATGTAGC 5031
Query 913 -------------------------------------------------------------------------- 912
Sbjct 5032 CCATCACTGACCAAGAGCTGCCTGGCACATTGTACACGATAAGTAGTTATGGTGTTTTTTGATCTCAAGGATAG 5105
Query 913 -------------------------------------------------------------------------- 912
Sbjct 5106 CTGCTCTGTGCAGCCAGGCCTGATTGCAGGTTTTTGTCTACCTATGCTCATTGGATAGCCCCTGTAAATGGGTA 5179
Query 913 -------------------------------------------------------------------------- 912
Sbjct 5180 TTGAGTAGAGGGGTATTCAGAGCCCTATTACCTGTTCAGAGGGGCTACACTCTACATCCTCAGTGTCTCTAACC 5253
Query 913 -------------------------------------------------------------------------- 912
Sbjct 5254 ATGTACCTGAAGATACATGGGTGACATGTGCTGTTAGAAAGATAAGATGGCAACTGTGGGCCTCCCAACAGCAT 5327
Query 913 -------------------------------------------------------------------------- 912
Sbjct 5328 CTTCCTCCTCCTTAATCATGTGTGTGACAGCAGTTAATGTTTATGTTAATCTTGGCAAAAAGAACCCTTAATTC 5401
Query 913 -------------------------------------------------------------------------- 912
Sbjct 5402 AAGTTGGTAGACTTGGACACTTGATTCTTTTCTGCCTCCCATTCAGTTGTGTTCAGTCTTTTGACTAACCATTG 5475
Query 913 -------------------------------------------------------------------------- 912
Sbjct 5476 CCCTTAAAACATACTTAACATTGAAAAAGCATATGGTAATGGTGGTATCTCTGCAGCCTCACCGACCCAGGCAC 5549
Query 913 -------------------------------------------------------------------------- 912
Sbjct 5550 TGTCAACAGGTGCTGCCACACATTCCTGGTCTCCAGTGCCCTCCCTGTCTCTTACAGGTGGGTCTTATATGTAC 5623
Query 913 -------------------------------------------------------------------------- 912
Sbjct 5624 AGTCATGCTGCAAGGGTGGGGAGCCTGTGCTGATGTGCTTCTGTGTGTTGGCCAAGGCTGTAGGGTGTACCCTG 5697
Query 913 ---------------------------------- 912
Sbjct 5698 ATGGTCTGAACACATAAAACTGTCCAAAAGGGAA 5731
