Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_14236
Subject:
NM_153391.2
Aligned Length:
4028
Identities:
1139
Gaps:
2722

Alignment

Query    1  ATGAAGCGTATTTTCTCACTGCTAGAAAAGACTTGGCTTGGCGCACCAATACAGTTTGCCTGGCAAAAAACATC  74
            |||||||||.|||||||.||||||||||||.||||||||||.||.||.|||||.|||||||||||||||.||||
Sbjct    1  ATGAAGCGTGTTTTCTCCCTGCTAGAAAAGTCTTGGCTTGGTGCTCCGATACAATTTGCCTGGCAAAAATCATC  74

Query   75  AGGAAACTACCTTGCAGTAACAGGAGCTGATTATATTGTGAAAATCTTTGATCGCCATGGTCAAAAAAGAAGTG  148
            |||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||.|||||||||||||
Sbjct   75  AGGAAACTACCTTGCAGTAACAGGAGCTGATTATATTGTTAAAATCTTTGATCGCCATGGCCAAAAAAGAAGTG  148

Query  149  AAATTAACTTACCTGGTAACTGTGTTGCCATGGATTGGGATAAAGATGGAGATGTCCTAGCAGTGATTGCTGAG  222
            ||||||.|||.|||||.|||||||||.||||||||||||||||||||||.|||.||||.|||||||||||||||
Sbjct  149  AAATTAGCTTGCCTGGCAACTGTGTTACCATGGATTGGGATAAAGATGGCGATATCCTGGCAGTGATTGCTGAG  222

Query  223  AAATCTAGCTGCATTTATCTTTGGGATGCCAACACAAATAAGACCAGCCAGTTAGACAATGGCATGAGGGATCA  296
            ||.|||||.|||||||||||.||||||||||||||||||||.|||||||||.|.||||||||||||||||||||
Sbjct  223  AAGTCTAGTTGCATTTATCTATGGGATGCCAACACAAATAAAACCAGCCAGCTGGACAATGGCATGAGGGATCA  296

Query  297  AATGTCTTTCCTTCTTTGGTCAAAAGTTGGAAGTTTCCTGGCTGTTGGAACTGTTAAAGGAAATTTGCTTATTT  370
            |||||||||||||||||||||||||.||||||||||||||||||||||.||..||||||||||||||||.||||
Sbjct  297  AATGTCTTTCCTTCTTTGGTCAAAAATTGGAAGTTTCCTGGCTGTTGGGACCATTAAAGGAAATTTGCTCATTT  370

Query  371  ATAATCATCAGACATCTCGAAAGATTCCTGTCCTTGGAAAACATACTAAGAGAATCACTTGTGGATGTTGGAAT  444
            |||||||||||||||||||||||||||||||.|||||||||||||||||||.||||||.|||||||||||||||
Sbjct  371  ATAATCATCAGACATCTCGAAAGATTCCTGTTCTTGGAAAACATACTAAGAAAATCACATGTGGATGTTGGAAT  444

Query  445  GCAGAAAATCTGCTTGCTTTAGGTGGTGAAGATAAAATGATTACAGTTAGTAATCAGGAAGGTGACACGATAAG  518
            .||||.|||||.||||||||.||.|||||||||||||||||||||||||||||.||||||||.|||||.|||||
Sbjct  445  TCAGAGAATCTCCTTGCTTTGGGAGGTGAAGATAAAATGATTACAGTTAGTAACCAGGAAGGCGACACAATAAG  518

Query  519  ACAGACACAAGTGAGATCAGAGCCTAGCAACATGCAGTTTTTCTTGATGAAGATGGATGACCGAACCTCTGCTG  592
            ||||||.|.|||||.|||||||||.|||.||||..||||.|.|.|||..||||..|||||.||||..|||.|||
Sbjct  519  ACAGACCCCAGTGAAATCAGAGCCAAGCGACATCAAGTTCTCCATGAGCAAGACAGATGAGCGAATTTCTTCTG  592

Query  593  CTGAAAGCATGATAAGTGTGGTGCTTGGCAAGAAAACTTTGTTTTTTTTAAATCTGAATGAACCAGATAACCCA  666
            ||||.|.||..|||||||..|||.||||||||||||...|||||.||||..||||||||||||||||||||||.
Sbjct  593  CTGAGAACACAATAAGTGCAGTGGTTGGCAAGAAAATGCTGTTTCTTTTTCATCTGAATGAACCAGATAACCCG  666

Query  667  GCTGATCTTGAATTTCAGCAGGACTTTGGCAACATTGTCTGCTATAATTGGTATGGTGATGGCCGCATCATGAT  740
            |..|||||.||.||||||||.|.||.||||||||||||||||||||.|||||||||.||||||..|||||||||
Sbjct  667  GTGGATCTGGAGTTTCAGCAAGCCTATGGCAACATTGTCTGCTATAGTTGGTATGGAGATGGCTACATCATGAT  740

Query  741  TGGTTTTTCATG-TGGACATTTTGTGGTCATTTCTACTCA--TACTGGAGAGCTTGGTCAAGAGATATTTCAGG  811
            |||.|||||..| .||||.|||| |||..|||||||||||  |.|.||| || ||||.||||||||||||.|||
Sbjct  741  TGGCTTTTCCCGAGGGACGTTTT-TGGCTATTTCTACTCACTTTCCGGA-AG-TTGGGCAAGAGATATTTAAGG  811

Query  812  CTCGTAACCATAAAGATAATCTAACCAGCATTGCAGTATCACAGACTCTTAACAAAGTTGCTACATGTGGAGAT  885
            |||||.|||||||.||||||||||||||..|.||..|.|||||||||||.|||||||.|||.||||||||.|||
Sbjct  812  CTCGTGACCATAAGGATAATCTAACCAGTGTGGCCTTGTCACAGACTCTGAACAAAGCTGCCACATGTGGCGAT  885

Query  886  AACTGTATTAAAATCCAAGACTTGGTTGACTTAAAAGACATGTATGTTATACTCAACCTGGATGAGGAAAATAA  959
            |||||.||.||||||||.||..||...||.||.|.|||||||||||.||||.|.||.||||||||.||.|||||
Sbjct  886  AACTGCATAAAAATCCATGATCTGACAGAATTGAGAGACATGTATGCTATAATTAATCTGGATGATGAGAATAA  959

Query  960  AGGATTGGGTACCTTGTCCTGGACTGATGATGGCCAGTTGCTAGCACTCTCTACCCAAAGGGGCTCACTTCATG  1033
            |||..||||||||||.|||||||||||||||||.||||||||||||||.|||||||||||.||||||||.||||
Sbjct  960  AGGGCTGGGTACCTTATCCTGGACTGATGATGGTCAGTTGCTAGCACTGTCTACCCAAAGAGGCTCACTGCATG  1033

Query 1034  TTTTCCTGACCAAGCTTCCCATACTTGGGGATGCCTG-CAGCACAAGGATTGCCTATCTCACCTCCCTCCTTGA  1106
            |.||||||||||||.|.|||||.||.|||||.||||| || ||||||||||||.||||||||||||||||||||
Sbjct 1034  TCTTCCTGACCAAGTTGCCCATCCTCGGGGACGCCTGTCA-CACAAGGATTGCGTATCTCACCTCCCTCCTTGA  1106

Query 1107  AGTCACCGTAGCCAACCCTGTTGAAGGAGAGCTACCAATCACAGTTTCTGTTGATGTGGAACCCAACTTTGTGG  1180
            .||||||||.|||||||...||||||||||||..|||||||||||.|||||.|||||||||||||.||||||.|
Sbjct 1107  GGTCACCGTGGCCAACCTCATTGAAGGAGAGCCGCCAATCACAGTCTCTGTGGATGTGGAACCCACCTTTGTCG  1180

Query 1181  CAGTAGGTCTTTATCATCTGGCTGTAGGAATGAATAATCGAGCTTGGTTTTATGTCCTTGGAGAAAATGCTGTG  1254
            |||||||.||.|||||||||||.||.||.||||||||.||.||||||||||||||||||||.|||||||.||| 
Sbjct 1181  CAGTAGGGCTCTATCATCTGGCCGTGGGGATGAATAACCGGGCTTGGTTTTATGTCCTTGGTGAAAATGTTGT-  1253

Query 1255  AAAAAAATTGAAAGATATGGAGTATCTGGGAACAGTAGCCAGTATTAGCCTTCATGC-----------------  1311
            .|||||.||.||||||.||||.|||||||||||.||.|||||.||..||||||||.|                 
Sbjct 1254  CAAAAAGTTAAAAGATGTGGAATATCTGGGAACCGTGGCCAGCATCTGCCTTCATTCTGACTACGCCGCTGCAC  1327

Query 1312  --------------------------------------------------------------------------  1311
                                                                                      
Sbjct 1328  TCTTTGAAGGCAAAATCCAGTTACATTTGATAGAAAATGAAATGTTGGACGCTCAGGAAGAGCGTGAGACTCGG  1401

Query 1312  --------------------------------------------------------------------------  1311
                                                                                      
Sbjct 1402  CTCTTTCCAGCAGTGGATGATAAGTGCCGGATTTTATGCCACGCCCTAACTAGTGATTTCCTCATCTACGGAAC  1475

Query 1312  --------------------------------------------------------------------------  1311
                                                                                      
Sbjct 1476  TGATACTGGCATCATTCACTATTTCTTCATCGAAGACTGGCAGTTCGTTAATGATTACCGGCATCCTGTTGGTG  1549

Query 1312  --------------------------------------------------------------------------  1311
                                                                                      
Sbjct 1550  TGAAGAAGCTATTTCCTGATCCAAATGGAACCAGATTGGTTTTCATTGATGAGAAGAGTGATGGATTTGTTTAC  1623

Query 1312  --------------------------------------------------------------------------  1311
                                                                                      
Sbjct 1624  TGTCCTGTTAATGATGCGACCTATGAGATTCCAGACTTCTCACCAACCATTAAAGGTGTTCTTTGGGAAAACTG  1697

Query 1312  --------------------------------------------------------------------------  1311
                                                                                      
Sbjct 1698  GCCGATGGACAAAGGTGTCTTTATCGCCTATGATGATGACAAGGTGTATACATATGCGTTTCACAAGGACACCA  1771

Query 1312  --------------------------------------------------------------------------  1311
                                                                                      
Sbjct 1772  TCCAAGGATCCAAGGTTATTTTGGCTGGCAGCACCAAACTTCCCTTCTCCCATAAGCCTTTGCTGTTATACAAT  1845

Query 1312  --------------------------------------------------------------------------  1311
                                                                                      
Sbjct 1846  GGAGAACTGACCTGCCAGACACAGAGTGGGAAAATCAACTCCATCTACCTCAGCACCCACAGCTTCCTTGGCAG  1919

Query 1312  --------------------------------------------------------------------------  1311
                                                                                      
Sbjct 1920  CATGAAAGACACGGAGCCTACTGACCTGAGGCAAATGCTGACGCAGACCCTGCTGCTCAAGCGGTTTTCTGATG  1993

Query 1312  --------------------------------------------------------------------------  1311
                                                                                      
Sbjct 1994  CTTGGGATATATGCAAGATGCTAAATGACCGCACTTCGTGGAGTGAGCTGGCCAAAGCCTGTCTGCATCACATG  2067

Query 1312  --------------------------------------------------------------------------  1311
                                                                                      
Sbjct 2068  GAGGTGGAGTTTGCTATCCGAGTGTCCCGGACAATGGGGGATGTTGGCACAGTGATGTCGTTGGAACAAATAAA  2141

Query 1312  --------------------------------------------------------------------------  1311
                                                                                      
Sbjct 2142  GGGAATCGAGGACTACAATCTTTTGGCAGGACATCTCGCCATGTTTACTAATGACTTCAACCTGGCCCAGGACC  2215

Query 1312  --------------------------------------------------------------------------  1311
                                                                                      
Sbjct 2216  TGTACCTGGCATCCAACTGCCCTGTGGCAGCCCTGGAGATGCGGCGGGACCTGCAGCACTGGGACAGCGCTCTG  2289

Query 1312  --------------------------------------------------------------------------  1311
                                                                                      
Sbjct 2290  CAGCTGGCAAAGCGCCTGGCCCCGGACCAGATACCCTTCATATCCAAAGAGTACGCCATCCAGCTGGAGTTCAC  2363

Query 1312  --------------------------------------------------------------------------  1311
                                                                                      
Sbjct 2364  AGGCGATTATGTAAACGCTCTGGCTCATTACGAGAAGGGCATCACCGGTGATAATAAGGAACACGACGAAGTGT  2437

Query 1312  --------------------------------------------------------------------------  1311
                                                                                      
Sbjct 2438  GCCTGGCCGGAGTGGCTCAGATGTCCATTCGAATGGGGGACATCCGCAGAGGGGCTAACCAAGCCCTCAAGCAC  2511

Query 1312  --------------------------------------------------------------------------  1311
                                                                                      
Sbjct 2512  CCCAGCAGGGTCCTCAAAAGAGACTGTGGAGCCATTCTGGAGAACATGAAGCAATTTTCAGAAGCTGCCCAGCT  2585

Query 1312  --------------------------------------------------------------------------  1311
                                                                                      
Sbjct 2586  GTACGAAAAGGGCCAATATTATGACAGAGCTGCCTCGGTCTACATCCGCTGCAAGAACTGGGCAAAAGTTGGCG  2659

Query 1312  --------------------------------------------------------------------------  1311
                                                                                      
Sbjct 2660  AACTTCTCCCTCATGTCTCCTCTCCTAAGATCCACTTGCAGTATGCCAAAGCCAAGGAGGCAGACGGAAGGTAC  2733

Query 1312  --------------------------------------------------------------------------  1311
                                                                                      
Sbjct 2734  AAGGAAGCCGTGGTGGCGTATGAAAATGCAAAGCAATGGAACAGTGTCATCCGCATCTACCTGGACCACCTCAA  2807

Query 1312  --------------------------------------------------------------------------  1311
                                                                                      
Sbjct 2808  CAACCCCGAAAAGGCCGTGAGCATCGTCAGAGAGACCCAGTCTCTGGACGGAGCCAAGATGGTAGCCAGGTTCT  2881

Query 1312  --------------------------------------------------------------------------  1311
                                                                                      
Sbjct 2882  TTCTGCAGCTTGGTGACTATGGGTCTGCCATCCAGTTTCTGGTTCTGTCCAAATGTAACAATGAAGCCTTCACC  2955

Query 1312  --------------------------------------------------------------------------  1311
                                                                                      
Sbjct 2956  TTGGCTCAGCAGCACAACAAAATGGAAATCTACGCAGACATCATTGGTGCTGAAGACACAACTAATGAAGACTA  3029

Query 1312  --------------------------------------------------------------------------  1311
                                                                                      
Sbjct 3030  TCAAAGTATCGCCTTATATTTTGAAGGAGAAAAAAGACATTTTCAGGCTGGAAAATTCTTCTTACTGTGTGGCC  3103

Query 1312  --------------------------------------------------------------------------  1311
                                                                                      
Sbjct 3104  AGTATTCACGGGCACTAAAGCACTTCCTGAAATGCCCAAGCTCAGAAGATAATGTGGCAATAGAAATGGCAATC  3177

Query 1312  --------------------------------------------------------------------------  1311
                                                                                      
Sbjct 3178  GAAACTGTGGGCCAGGCCAAAGATGAACTGCTGACCAATCAGCTGATCGACCACCTGATGGGGGAGAGCGATGG  3251

Query 1312  --------------------------------------------------------------------------  1311
                                                                                      
Sbjct 3252  CATGCCAAAGGACGCCAAGTACCTGTTCCGCTTGTACATGGCGCTAAAGCAGTACCGTGAAGCAGCCCGGACCG  3325

Query 1312  --------------------------------------------------------------------------  1311
                                                                                      
Sbjct 3326  CCATCATCATCGCCAGAGAAGAGCAGTCTGCAGGAAACTATCGGAATGCACACGATGTTCTTTTCAGTATGTAC  3399

Query 1312  --------------------------------------------------------------------------  1311
                                                                                      
Sbjct 3400  GCAGAACTTAAAGCCCAGAAGATCAAGATCCCCTCCGAAATGGCCACCAACCTCATGATCCTGCACAGTTACAT  3473

Query 1312  --------------------------------------------------------------------------  1311
                                                                                      
Sbjct 3474  TCTCGTGAAGATTCATGTTAAGAGTGGAGACCATATGAAGGGAGCGCGCATGCTCATTCGGGTGGCCAACAATA  3547

Query 1312  --------------------------------------------------------------------------  1311
                                                                                      
Sbjct 3548  TCAGCAAGTTCCCATCACACATCGTGCCTATCCTGACGTCTACTGTGATTGAGTGTCATAGGGCAGGCCTGAAA  3621

Query 1312  --------------------------------------------------------------------------  1311
                                                                                      
Sbjct 3622  AACTCTGCCTTCAGCTTTGCAGCTATGCTGATGAGGCCTGAATACCGCAACAAAATTGATGCCAAGTACAAAAA  3695

Query 1312  --------------------------------------------------------------------------  1311
                                                                                      
Sbjct 3696  GAAAATTGAGGCGATGGTCAGGAGACCCGATACTTCAGAGACAGAAGAGGCCACCACCCCATGTCCATTCTGCC  3769

Query 1312  --------------------------------------------------------------------------  1311
                                                                                      
Sbjct 3770  AGTTTCTTCTCCCAGAATGTGAGCTCCTCTGTCCTGGCTGTAAAAACAACATTCCCTATTGCATTGCAACAGGC  3843

Query 1312  --------------------------------------------------------------------------  1311
                                                                                      
Sbjct 3844  CGACACATGTTGAAAGACGACTGGACAATGTGCCCGCATTGTGGCTTCCCTGCTCTGTACTCAGAATTCAAGAT  3917

Query 1312  --------------------------------------------------------------------------  1311
                                                                                      
Sbjct 3918  CTTACTAAACAGTGAAAGCACGTGTCCTATGTGTTCAGAAAGATTAAACTCCAGTCAACTGAAAAAAATTACAG  3991

Query 1312  --------------------------------  1311
                                            
Sbjct 3992  ACTGCTCGCAGTACCTACGGACAGAGATGGAA  4023

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