Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_14236
- Subject:
- NM_153391.2
- Aligned Length:
- 4028
- Identities:
- 1139
- Gaps:
- 2722
Alignment
Query 1 ATGAAGCGTATTTTCTCACTGCTAGAAAAGACTTGGCTTGGCGCACCAATACAGTTTGCCTGGCAAAAAACATC 74
|||||||||.|||||||.||||||||||||.||||||||||.||.||.|||||.|||||||||||||||.||||
Sbjct 1 ATGAAGCGTGTTTTCTCCCTGCTAGAAAAGTCTTGGCTTGGTGCTCCGATACAATTTGCCTGGCAAAAATCATC 74
Query 75 AGGAAACTACCTTGCAGTAACAGGAGCTGATTATATTGTGAAAATCTTTGATCGCCATGGTCAAAAAAGAAGTG 148
|||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||.|||||||||||||
Sbjct 75 AGGAAACTACCTTGCAGTAACAGGAGCTGATTATATTGTTAAAATCTTTGATCGCCATGGCCAAAAAAGAAGTG 148
Query 149 AAATTAACTTACCTGGTAACTGTGTTGCCATGGATTGGGATAAAGATGGAGATGTCCTAGCAGTGATTGCTGAG 222
||||||.|||.|||||.|||||||||.||||||||||||||||||||||.|||.||||.|||||||||||||||
Sbjct 149 AAATTAGCTTGCCTGGCAACTGTGTTACCATGGATTGGGATAAAGATGGCGATATCCTGGCAGTGATTGCTGAG 222
Query 223 AAATCTAGCTGCATTTATCTTTGGGATGCCAACACAAATAAGACCAGCCAGTTAGACAATGGCATGAGGGATCA 296
||.|||||.|||||||||||.||||||||||||||||||||.|||||||||.|.||||||||||||||||||||
Sbjct 223 AAGTCTAGTTGCATTTATCTATGGGATGCCAACACAAATAAAACCAGCCAGCTGGACAATGGCATGAGGGATCA 296
Query 297 AATGTCTTTCCTTCTTTGGTCAAAAGTTGGAAGTTTCCTGGCTGTTGGAACTGTTAAAGGAAATTTGCTTATTT 370
|||||||||||||||||||||||||.||||||||||||||||||||||.||..||||||||||||||||.||||
Sbjct 297 AATGTCTTTCCTTCTTTGGTCAAAAATTGGAAGTTTCCTGGCTGTTGGGACCATTAAAGGAAATTTGCTCATTT 370
Query 371 ATAATCATCAGACATCTCGAAAGATTCCTGTCCTTGGAAAACATACTAAGAGAATCACTTGTGGATGTTGGAAT 444
|||||||||||||||||||||||||||||||.|||||||||||||||||||.||||||.|||||||||||||||
Sbjct 371 ATAATCATCAGACATCTCGAAAGATTCCTGTTCTTGGAAAACATACTAAGAAAATCACATGTGGATGTTGGAAT 444
Query 445 GCAGAAAATCTGCTTGCTTTAGGTGGTGAAGATAAAATGATTACAGTTAGTAATCAGGAAGGTGACACGATAAG 518
.||||.|||||.||||||||.||.|||||||||||||||||||||||||||||.||||||||.|||||.|||||
Sbjct 445 TCAGAGAATCTCCTTGCTTTGGGAGGTGAAGATAAAATGATTACAGTTAGTAACCAGGAAGGCGACACAATAAG 518
Query 519 ACAGACACAAGTGAGATCAGAGCCTAGCAACATGCAGTTTTTCTTGATGAAGATGGATGACCGAACCTCTGCTG 592
||||||.|.|||||.|||||||||.|||.||||..||||.|.|.|||..||||..|||||.||||..|||.|||
Sbjct 519 ACAGACCCCAGTGAAATCAGAGCCAAGCGACATCAAGTTCTCCATGAGCAAGACAGATGAGCGAATTTCTTCTG 592
Query 593 CTGAAAGCATGATAAGTGTGGTGCTTGGCAAGAAAACTTTGTTTTTTTTAAATCTGAATGAACCAGATAACCCA 666
||||.|.||..|||||||..|||.||||||||||||...|||||.||||..||||||||||||||||||||||.
Sbjct 593 CTGAGAACACAATAAGTGCAGTGGTTGGCAAGAAAATGCTGTTTCTTTTTCATCTGAATGAACCAGATAACCCG 666
Query 667 GCTGATCTTGAATTTCAGCAGGACTTTGGCAACATTGTCTGCTATAATTGGTATGGTGATGGCCGCATCATGAT 740
|..|||||.||.||||||||.|.||.||||||||||||||||||||.|||||||||.||||||..|||||||||
Sbjct 667 GTGGATCTGGAGTTTCAGCAAGCCTATGGCAACATTGTCTGCTATAGTTGGTATGGAGATGGCTACATCATGAT 740
Query 741 TGGTTTTTCATG-TGGACATTTTGTGGTCATTTCTACTCA--TACTGGAGAGCTTGGTCAAGAGATATTTCAGG 811
|||.|||||..| .||||.|||| |||..||||||||||| |.|.||| || ||||.||||||||||||.|||
Sbjct 741 TGGCTTTTCCCGAGGGACGTTTT-TGGCTATTTCTACTCACTTTCCGGA-AG-TTGGGCAAGAGATATTTAAGG 811
Query 812 CTCGTAACCATAAAGATAATCTAACCAGCATTGCAGTATCACAGACTCTTAACAAAGTTGCTACATGTGGAGAT 885
|||||.|||||||.||||||||||||||..|.||..|.|||||||||||.|||||||.|||.||||||||.|||
Sbjct 812 CTCGTGACCATAAGGATAATCTAACCAGTGTGGCCTTGTCACAGACTCTGAACAAAGCTGCCACATGTGGCGAT 885
Query 886 AACTGTATTAAAATCCAAGACTTGGTTGACTTAAAAGACATGTATGTTATACTCAACCTGGATGAGGAAAATAA 959
|||||.||.||||||||.||..||...||.||.|.|||||||||||.||||.|.||.||||||||.||.|||||
Sbjct 886 AACTGCATAAAAATCCATGATCTGACAGAATTGAGAGACATGTATGCTATAATTAATCTGGATGATGAGAATAA 959
Query 960 AGGATTGGGTACCTTGTCCTGGACTGATGATGGCCAGTTGCTAGCACTCTCTACCCAAAGGGGCTCACTTCATG 1033
|||..||||||||||.|||||||||||||||||.||||||||||||||.|||||||||||.||||||||.||||
Sbjct 960 AGGGCTGGGTACCTTATCCTGGACTGATGATGGTCAGTTGCTAGCACTGTCTACCCAAAGAGGCTCACTGCATG 1033
Query 1034 TTTTCCTGACCAAGCTTCCCATACTTGGGGATGCCTG-CAGCACAAGGATTGCCTATCTCACCTCCCTCCTTGA 1106
|.||||||||||||.|.|||||.||.|||||.||||| || ||||||||||||.||||||||||||||||||||
Sbjct 1034 TCTTCCTGACCAAGTTGCCCATCCTCGGGGACGCCTGTCA-CACAAGGATTGCGTATCTCACCTCCCTCCTTGA 1106
Query 1107 AGTCACCGTAGCCAACCCTGTTGAAGGAGAGCTACCAATCACAGTTTCTGTTGATGTGGAACCCAACTTTGTGG 1180
.||||||||.|||||||...||||||||||||..|||||||||||.|||||.|||||||||||||.||||||.|
Sbjct 1107 GGTCACCGTGGCCAACCTCATTGAAGGAGAGCCGCCAATCACAGTCTCTGTGGATGTGGAACCCACCTTTGTCG 1180
Query 1181 CAGTAGGTCTTTATCATCTGGCTGTAGGAATGAATAATCGAGCTTGGTTTTATGTCCTTGGAGAAAATGCTGTG 1254
|||||||.||.|||||||||||.||.||.||||||||.||.||||||||||||||||||||.|||||||.|||
Sbjct 1181 CAGTAGGGCTCTATCATCTGGCCGTGGGGATGAATAACCGGGCTTGGTTTTATGTCCTTGGTGAAAATGTTGT- 1253
Query 1255 AAAAAAATTGAAAGATATGGAGTATCTGGGAACAGTAGCCAGTATTAGCCTTCATGC----------------- 1311
.|||||.||.||||||.||||.|||||||||||.||.|||||.||..||||||||.|
Sbjct 1254 CAAAAAGTTAAAAGATGTGGAATATCTGGGAACCGTGGCCAGCATCTGCCTTCATTCTGACTACGCCGCTGCAC 1327
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 1328 TCTTTGAAGGCAAAATCCAGTTACATTTGATAGAAAATGAAATGTTGGACGCTCAGGAAGAGCGTGAGACTCGG 1401
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 1402 CTCTTTCCAGCAGTGGATGATAAGTGCCGGATTTTATGCCACGCCCTAACTAGTGATTTCCTCATCTACGGAAC 1475
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 1476 TGATACTGGCATCATTCACTATTTCTTCATCGAAGACTGGCAGTTCGTTAATGATTACCGGCATCCTGTTGGTG 1549
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 1550 TGAAGAAGCTATTTCCTGATCCAAATGGAACCAGATTGGTTTTCATTGATGAGAAGAGTGATGGATTTGTTTAC 1623
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 1624 TGTCCTGTTAATGATGCGACCTATGAGATTCCAGACTTCTCACCAACCATTAAAGGTGTTCTTTGGGAAAACTG 1697
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 1698 GCCGATGGACAAAGGTGTCTTTATCGCCTATGATGATGACAAGGTGTATACATATGCGTTTCACAAGGACACCA 1771
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 1772 TCCAAGGATCCAAGGTTATTTTGGCTGGCAGCACCAAACTTCCCTTCTCCCATAAGCCTTTGCTGTTATACAAT 1845
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 1846 GGAGAACTGACCTGCCAGACACAGAGTGGGAAAATCAACTCCATCTACCTCAGCACCCACAGCTTCCTTGGCAG 1919
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 1920 CATGAAAGACACGGAGCCTACTGACCTGAGGCAAATGCTGACGCAGACCCTGCTGCTCAAGCGGTTTTCTGATG 1993
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 1994 CTTGGGATATATGCAAGATGCTAAATGACCGCACTTCGTGGAGTGAGCTGGCCAAAGCCTGTCTGCATCACATG 2067
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 2068 GAGGTGGAGTTTGCTATCCGAGTGTCCCGGACAATGGGGGATGTTGGCACAGTGATGTCGTTGGAACAAATAAA 2141
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 2142 GGGAATCGAGGACTACAATCTTTTGGCAGGACATCTCGCCATGTTTACTAATGACTTCAACCTGGCCCAGGACC 2215
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 2216 TGTACCTGGCATCCAACTGCCCTGTGGCAGCCCTGGAGATGCGGCGGGACCTGCAGCACTGGGACAGCGCTCTG 2289
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 2290 CAGCTGGCAAAGCGCCTGGCCCCGGACCAGATACCCTTCATATCCAAAGAGTACGCCATCCAGCTGGAGTTCAC 2363
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 2364 AGGCGATTATGTAAACGCTCTGGCTCATTACGAGAAGGGCATCACCGGTGATAATAAGGAACACGACGAAGTGT 2437
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 2438 GCCTGGCCGGAGTGGCTCAGATGTCCATTCGAATGGGGGACATCCGCAGAGGGGCTAACCAAGCCCTCAAGCAC 2511
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 2512 CCCAGCAGGGTCCTCAAAAGAGACTGTGGAGCCATTCTGGAGAACATGAAGCAATTTTCAGAAGCTGCCCAGCT 2585
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 2586 GTACGAAAAGGGCCAATATTATGACAGAGCTGCCTCGGTCTACATCCGCTGCAAGAACTGGGCAAAAGTTGGCG 2659
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 2660 AACTTCTCCCTCATGTCTCCTCTCCTAAGATCCACTTGCAGTATGCCAAAGCCAAGGAGGCAGACGGAAGGTAC 2733
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 2734 AAGGAAGCCGTGGTGGCGTATGAAAATGCAAAGCAATGGAACAGTGTCATCCGCATCTACCTGGACCACCTCAA 2807
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 2808 CAACCCCGAAAAGGCCGTGAGCATCGTCAGAGAGACCCAGTCTCTGGACGGAGCCAAGATGGTAGCCAGGTTCT 2881
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 2882 TTCTGCAGCTTGGTGACTATGGGTCTGCCATCCAGTTTCTGGTTCTGTCCAAATGTAACAATGAAGCCTTCACC 2955
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 2956 TTGGCTCAGCAGCACAACAAAATGGAAATCTACGCAGACATCATTGGTGCTGAAGACACAACTAATGAAGACTA 3029
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 3030 TCAAAGTATCGCCTTATATTTTGAAGGAGAAAAAAGACATTTTCAGGCTGGAAAATTCTTCTTACTGTGTGGCC 3103
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 3104 AGTATTCACGGGCACTAAAGCACTTCCTGAAATGCCCAAGCTCAGAAGATAATGTGGCAATAGAAATGGCAATC 3177
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 3178 GAAACTGTGGGCCAGGCCAAAGATGAACTGCTGACCAATCAGCTGATCGACCACCTGATGGGGGAGAGCGATGG 3251
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 3252 CATGCCAAAGGACGCCAAGTACCTGTTCCGCTTGTACATGGCGCTAAAGCAGTACCGTGAAGCAGCCCGGACCG 3325
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 3326 CCATCATCATCGCCAGAGAAGAGCAGTCTGCAGGAAACTATCGGAATGCACACGATGTTCTTTTCAGTATGTAC 3399
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 3400 GCAGAACTTAAAGCCCAGAAGATCAAGATCCCCTCCGAAATGGCCACCAACCTCATGATCCTGCACAGTTACAT 3473
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 3474 TCTCGTGAAGATTCATGTTAAGAGTGGAGACCATATGAAGGGAGCGCGCATGCTCATTCGGGTGGCCAACAATA 3547
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 3548 TCAGCAAGTTCCCATCACACATCGTGCCTATCCTGACGTCTACTGTGATTGAGTGTCATAGGGCAGGCCTGAAA 3621
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 3622 AACTCTGCCTTCAGCTTTGCAGCTATGCTGATGAGGCCTGAATACCGCAACAAAATTGATGCCAAGTACAAAAA 3695
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 3696 GAAAATTGAGGCGATGGTCAGGAGACCCGATACTTCAGAGACAGAAGAGGCCACCACCCCATGTCCATTCTGCC 3769
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 3770 AGTTTCTTCTCCCAGAATGTGAGCTCCTCTGTCCTGGCTGTAAAAACAACATTCCCTATTGCATTGCAACAGGC 3843
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 3844 CGACACATGTTGAAAGACGACTGGACAATGTGCCCGCATTGTGGCTTCCCTGCTCTGTACTCAGAATTCAAGAT 3917
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 3918 CTTACTAAACAGTGAAAGCACGTGTCCTATGTGTTCAGAAAGATTAAACTCCAGTCAACTGAAAAAAATTACAG 3991
Query 1312 -------------------------------- 1311
Sbjct 3992 ACTGCTCGCAGTACCTACGGACAGAGATGGAA 4023
