Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_14236
- Subject:
- XM_011513727.1
- Aligned Length:
- 4039
- Identities:
- 827
- Gaps:
- 3209
Alignment
Query 1 ATGAAGCGTATTTTCTCACTGCTAGAAAAGACTTGGCTTGGCGCACCAATACAGTTTGCCTGGCAAAAAACATC 74
Sbjct 1 -------------------------------------------------------------------------- 0
Query 75 AGGAAACTACCTTGCAGTAACAGGAGCTGATTATATTGTGAAAATCTTTGATCGCCATGGTCAAAAAAGAAGTG 148
Sbjct 1 -------------------------------------------------------------------------- 0
Query 149 AAATTAACTTACCTGGTAACTGTGTTGCCATGGATTGGGATAAAGATGGAGATGTCCTAGCAGTGATTGCTGAG 222
Sbjct 1 -------------------------------------------------------------------------- 0
Query 223 AAATCTAGCTGCATTTATCTTTGGGATGCCAACACAAATAAGACCAGCCAGTTAGACAATGGCATGAGGGATCA 296
Sbjct 1 -------------------------------------------------------------------------- 0
Query 297 AATGTCTTTCCTTCTTTGGTCAAAAGTTGGAAGTTTCCTGGCTGTTGGAACTGTTAAAGGAAATTTGCTTATTT 370
Sbjct 1 -------------------------------------------------------------------------- 0
Query 371 ATAATCATCAGACATCTCGAAAGATTCCTGTCCTTGGAAAACATACTAAGAGAATCACTTGTGGATGTTGGAAT 444
Sbjct 1 -------------------------------------------------------------------------- 0
Query 445 GCAGAAAATCTGCTTGCTTTAGGTGGTGAAGATAAAATGATTACAGTTAGTAATCAGGAAGGTGACACGATAAG 518
||||||||||||||||||||||||||||||||||||||
Sbjct 1 ------------------------------------ATGATTACAGTTAGTAATCAGGAAGGTGACACGATAAG 38
Query 519 ACAGACACAAGTGAGATCAGAGCCTAGCAACATGCAGTTTTTCTTGATGAAGATGGATGACCGAACCTCTGCTG 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 39 ACAGACACAAGTGAGATCAGAGCCTAGCAACATGCAGTTTTTCTTGATGAAGATGGATGACCGAACCTCTGCTG 112
Query 593 CTGAAAGCATGATAAGTGTGGTGCTTGGCAAGAAAACTTTGTTTTTTTTAAATCTGAATGAACCAGATAACCCA 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 113 CTGAAAGCATGATAAGTGTGGTGCTTGGCAAGAAAACTTTGTTTTTTTTAAATCTGAATGAACCAGATAACCCA 186
Query 667 GCTGATCTTGAATTTCAGCAGGACTTTGGCAACATTGTCTGCTATAATTGGTATGGTGATGGCCGCATCATGAT 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 187 GCTGATCTTGAATTTCAGCAGGACTTTGGCAACATTGTCTGCTATAATTGGTATGGTGATGGCCGCATCATGAT 260
Query 741 TGGTTTTTCATGTGGACATTTTGTGGTCATTTCTACTCATACTGGAGAGCTTGGTCAAGAGATATTTCAGGCTC 814
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 261 TGGTTTTTCATGTGGACATTTTGTGGTCATTTCTACTCATACTGGAGAGCTTGGTCAAGAGATATTTCAGGCTC 334
Query 815 GTAACCATAAAGATAATCTAACCAGCATTGCAGTATCACAGACTCTTAACAAAGTTGCTACATGTGGAGATAAC 888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 335 GTAACCATAAAGATAATCTAACCAGCATTGCAGTATCACAGACTCTTAACAAAGTTGCTACATGTGGAGATAAC 408
Query 889 TGTATTAAAATCCAAGACTTGGTTGACTTAAAAGACATGTATGTTATACTCAACCTGGATGAGGAAAATAAAGG 962
||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 409 TGCATTAAAATCCAAGACTTGGTTGACTTAAAAGACATGTATGTTATACTCAACCTGGATGAGGAAAATAAAGG 482
Query 963 ATTGGGTACCTTGTCCTGGACTGATGATGGCCAGTTGCTAGCACTCTCTACCCAAAGGGGCTCACTTCATGTTT 1036
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 483 ATTGGGTACCTTGTCCTGGACTGATGATGGCCAGTTGCTAGCACTCTCTACCCAAAGGGGCTCACTTCATGTTT 556
Query 1037 TCCTGACCAAGCTTCCCATACTTGGGGATGCCTGCAGCACAAGGATTGCCTATCTCACCTCCCTCCTTGAAGTC 1110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 557 TCCTGACCAAGCTTCCCATACTTGGGGATGCCTGCAGCACAAGGATTGCCTATCTCACCTCCCTCCTTGAAGTC 630
Query 1111 ACCGTAGCCAACCCTGTTGAAGGAGAGCTACCAATCACAGTTTCTGTTGATGTGGAACCCAACTTTGTGGCAGT 1184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 631 ACCGTAGCCAACCCTGTTGAAGGAGAGCTACCAATCACAGTTTCTGTTGATGTGGAACCCAACTTTGTGGCAGT 704
Query 1185 AGGTCTTTATCATCTGGCTGTAGGAATGAATAATCGAGCTTGGTTTTATGTCCTTGGAGAAAATGCTGTGAAAA 1258
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 705 AGGTCTTTATCATCTGGCTGTAGGAATGAATAATCGAGCTTGGTTTTATGTCCTTGGAGAAAATGCTGTG-AAA 777
Query 1259 AAATTGAAAGATATGGAGTATCTGGGAACAGTAGCCAGTATTAGCCTTCATGC--------------------- 1311
||||||||||||||||||||||||||||||||||||||||||.||||||||.|
Sbjct 778 AAATTGAAAGATATGGAGTATCTGGGAACAGTAGCCAGTATTTGCCTTCATTCTGACTATGCTGCTGCACTTTT 851
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 852 TGAAGGCAAAGTCCAGTTACATTTGATAGAAAGCGAAATCTTGGATGCTCAAGAAGAACGTGAGACTCGGCTTT 925
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 926 TCCCAGCAGTGGATGATAAGTGCCGTATCTTATGCCATGCCTTAACTAGTGATTTCCTCATCTATGGTACAGAT 999
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 1000 ACTGGTGTCGTTCAGTATTTCTACATTGAAGACTGGCAATTCGTTAATGATTATCGACATCCTGTCAGTGTGAA 1073
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 1074 AAAGATTTTTCCCGACCCAAATGGGACCAGATTAGTTTTCATTGATGAAAAAAGTGATGGATTTGTTTACTGTC 1147
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 1148 CAGTCAATGACGCTACCTATGAGATTCCAGATTTTTCACCAACCATTAAAGGTGTTCTTTGGGAAAACTGGCCA 1221
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 1222 ATGGATAAAGGTGTATTTATTGCTTATGATGATGATAAGGTGTACACTTATGTCTTTCACAAGGACACTATACA 1295
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 1296 AGGAGCCAAGGTTATTTTGGCTGGTAGCACCAAAGTTCCTTTTGCTCATAAACCTTTGCTGCTATATAATGGAG 1369
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 1370 AGCTGACCTGCCAAACACAGAGTGGAAAAGTAAACAACATCTACCTTAGCACCCATGGCTTTCTCAGCAACTTA 1443
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 1444 AAAGATACGGGGCCTGACGAACTGAGACCAATGCTGGCACAGAATTTAATGCTAAAGAGGTTTTCTGATGCTTG 1517
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 1518 GGAAATGTGCAGGATTCTGAATGATGAGGCTGCCTGGAATGAGTTGGCCAGAGCTTGTCTACATCACATGGAAG 1591
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 1592 TGGAGTTTGCAATCCGTGTTTATCGGAGAATTGGAAATGTTGGCATAGTGATGTCCTTGGAACAAATAAAGGGA 1665
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 1666 ATAGAGGACTACAATCTTTTGGCAGGACACCTTGCCATGTTTACCAACGATTATAACCTGGCTCAGGACTTGTA 1739
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 1740 CCTTGCATCCAGCTGTCCTATTGCTGCCCTGGAGGTATGGCAGCAAATGAGAAGGGATTTACAGCATTGGGACA 1813
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 1814 GTGCTCTACAACTGGCAAAGCATTTGGCCCCAGACCAGATACCTTTTATATCAAAAGAATATGCTATTCAGCTT 1887
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 1888 GAATTCGCGGGTGATTATGTAAATGCTTTGGCTCATTATGAGAAAGGAATAACAGGTGATAATAAGGAACATGA 1961
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 1962 TGAAGCTTGTCTGGCTGGAGTGGCCCAGATGTCCATAAGAATGGGAGACATACGTCGAGGGGTTAACCAAGCCC 2035
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 2036 TCAAGCATCCCAGCAGGGTCCTTAAAAGAGACTGTGGAGCCATATTGGAGAATATGAAGCAATTTTCAGAAGCG 2109
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 2110 GCCCAACTGTATGAAAAAGGTCTCTACTACGATAAAGCAGCATCTGTTTACATCCGCTCTAAGAATTGGGCAAA 2183
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 2184 AGTTGGTGATCTTCTGCCCCACGTTTCTTCTCCTAAGATCCATTTGCAGTATGCCAAAGCCAAGGAAGCAGATG 2257
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 2258 GAAGATACAAAGAAGCTGTTGTAGCTTATGAAAATGCAAAACAGTGGCAAAGTGTAATCCGCATCTATCTGGAT 2331
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 2332 CACCTCAATAATCCTGAAAAAGCTGTCAATATTGTTAGAGAGACCCAGTCTCTGGATGGAGCCAAAATGGTAGC 2405
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 2406 CAGGTTTTTTCTACAGCTTGGTGACTATGGGTCTGCCATCCAGTTTCTTGTCATGTCCAAATGCAACAATGAAG 2479
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 2480 CTTTCACACTGGCTCAGCAACACAACAAAATGGAAATCTATGCAGATATTATTGGTTCTGAAGACACTACTAAT 2553
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 2554 GAAGACTATCAAAGCATTGCCTTATACTTTGAAGGAGAAAAGAGATATCTTCAGGCTGGAAAATTCTTCTTGCT 2627
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 2628 GTGTGGCCAATATTCACGAGCACTTAAACACTTCCTGAAATGCCCAAGCTCGGAAGATAATGTGGCAATAGAAA 2701
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 2702 TGGCAATTGAAACTGTTGGTCAGGCCAAAGATGAACTGCTGACCAATCAGCTGATAGACCATCTCCTGGGGGAG 2775
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 2776 AACGATGGCATGCCTAAGGATGCCAAGTACCTGTTCCGCTTGTACATGGCTCTGAAGCAATACCGAGAAGCTGC 2849
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 2850 CCAGACTGCCATCATCATTGCCAGAGAAGAGCAGTCTGCAGGCAACTACCGGAATGCACACGATGTTCTCTTCA 2923
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 2924 GTATGTATGCAGAACTGAAATCCCAGAAGATCAAAATTCCCTCCGAGATGGCCACCAACCTCATGATTCTGCAC 2997
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 2998 AGCTATATACTAGTAAAGATTCATGTTAAAAATGGAGATCACATGAAAGGGGCTCGCATGCTCATTCGGGTGGC 3071
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 3072 CAACAACATCAGCAAATTTCCATCACACATTGTACCCATCCTGACGTCAACTGTGATTGAGTGTCACAGGGCAG 3145
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 3146 GCCTGAAGAACTCTGCTTTCAGCTTCGCAGCTATGTTGATGAGGCCTGAATACCGCAGCAAAATAGATGCCAAA 3219
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 3220 TACAAAAAGAAGATCGAGGGAATGGTCAGGAGACCCGATATATCTGAGATAGAAGAGGCCACGACTCCATGTCC 3293
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 3294 ATTCTGCAAATTTCTTCTCCCAGAGTGTGAACTCCTCTGTCCTGGATGTAAAAACAGTATCCCATATTGCATTG 3367
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 3368 CAACAGGTCGACACATGTTGAAAGATGACTGGACGGTGTGTCCACATTGTGACTTCCCTGCTCTATACTCAGAA 3441
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 3442 TTGAAGATCATGCTAAACACTGAAAGCACATGTCCTATGTGTTCAGAAAGATTAAACGCTGCTCAGCTGAAAAA 3515
Query 1312 ------------------------------------------- 1311
Sbjct 3516 GATTTCAGACTGTACCCAGTACCTGCGAACGGAGGAGGAACTG 3558
