Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_14236
- Subject:
- XR_001741307.1
- Aligned Length:
- 4632
- Identities:
- 1307
- Gaps:
- 3322
Alignment
Query 1 ----------------------------------------------------------------ATGAAGCGTA 10
||||||||||
Sbjct 1 CTGCTTGGTGGAGACCGGGTGCGCCTGCGTACTTCATAGTTCGCGTAGCGGCTCGAGCGTGGAGATGAAGCGTA 74
Query 11 TTTTCTCACTGCTAGAAAAGACTTGGCTTGGCGCACCAATACAGTTTGCCTGGCAAAAAACATCAGGAAACTAC 84
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 TTTTCTCACTGCTAGAAAAGACTTGGCTTGGCGCACCAATACAGTTTGCCTGGCAAAAAACATCAGGAAACTAC 148
Query 85 CTTGCAGTAACAGGAGCTGATTATATTGTGAAAATCTTTGATCGCCATGGTCAAAAAAGAAGTGAAATTAACTT 158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 CTTGCAGTAACAGGAGCTGATTATATTGTGAAAATCTTTGATCGCCATGGTCAAAAAAGAAGTGAAATTAACTT 222
Query 159 ACCTGGTAACTGTGTTGCCATGGATTGGGATAAAGATGGAGATGTCCTAGCAGTGATTGCTGAGAAATCTAGCT 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 ACCTGGTAACTGTGTTGCCATGGATTGGGATAAAGATGGAGATGTCCTAGCAGTGATTGCTGAGAAATCTAGCT 296
Query 233 GCATTTATCTTTGGGATGCCAACACAAATAAGACCAGCCAGTTAGACAATGGCATGAGGGATCAAATGTCTTTC 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GCATTTATCTTTGGGATGCCAACACAAATAAGACCAGCCAGTTAGACAATGGCATGAGGGATCAAATGTCTTTC 370
Query 307 CTTCTTTGGTCAAAAGTTGGAAGTTTCCTGGCTGTTGGAACTGTTAAAGGAAATTTGCTTATTTATAATCATCA 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 CTTCTTTGGTCAAAAGTTGGAAGTTTCCTGGCTGTTGGAACTGTTAAAGGAAATTTGCTTATTTATAATCATCA 444
Query 381 GACATCTCGAAAGATTCCTGTCCTTGGAAAACATACTAAGAGAATCACTTGTGGATGTTGGAATGCAGAAAATC 454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 GACATCTCGAAAGATTCCTGTCCTTGGAAAACATACTAAGAGAATCACTTGTGGATGTTGGAATGCAGAAAATC 518
Query 455 TGCTTGCTTTAGGTGGTGAAGATAAAATGATTACAGTTAGTAATCAGGAAGGTGACACGATAAGACAGACACAA 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 TGCTTGCTTTAGGTGGTGAAGATAAAATGATTACAGTTAGTAATCAGGAAGGTGACACGATAAGACAGACACAA 592
Query 529 GTGAGATCAGAGCCTAGCAACATGCAGTTTTTCTTGATGAAGATGGATGACCGAACCTCTGCTGCTGAAAGCAT 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 GTGAGATCAGAGCCTAGCAACATGCAGTTTTTCTTGATGAAGATGGATGACCGAACCTCTGCTGCTGAAAGCAT 666
Query 603 GATAAGTGTGGTGCTTGGCAAGAAAACTTTGTTTTTTTTAAATCTGAATGAACCAGATAACCCAGCTGATCTTG 676
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 GATAAGTGTGGTGCTTGGCAAGAAAACTTTGTTTTTTTTAAATCTGAATGAACCAGATAACCCAGCTGATCTTG 740
Query 677 AATTTCAGCAGGACTTTGGCAACATTGTCTGCTATAATTGGTATGGTGATGGCCGCATCATGATTGGTTTTTCA 750
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 AATTTCAGCAGGACTTTGGCAACATTGTCTGCTATAATTGGTATGGTGATGGCCGCATCATGATTGGTTTTTCA 814
Query 751 TGTGGACATTTTGTGGTCATTTCTACTCATACTGGAGAGCTTGGTCAAGAGATATTTCAGGCTCGTAACCATAA 824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 TGTGGACATTTTGTGGTCATTTCTACTCATACTGGAGAGCTTGGTCAAGAGATATTTCAGGCTCGTAACCATAA 888
Query 825 AGATAATCTAACCAGCATTGCAGTATCACAGACTCTTAACAAAGTTGCTACATGTGGAGATAACTGTATTAAAA 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||
Sbjct 889 AGATAATCTAACCAGCATTGCAGTATCACAGACTCTTAACAAAGTTGCTACATGTGGAGATAACTGCATTAAAA 962
Query 899 TCCAAGACTTGGTTGACTTAAAAGACATGTATGTTATACTCAACCTGGATGAGGAAAATAAAGGATTGGGTACC 972
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 TCCAAGACTTGGTTGACTTAAAAGACATGTATGTTATACTCAACCTGGATGAGGAAAATAAAGGATTGGGTACC 1036
Query 973 TTGTCCTGGACTGATGATGGCCAGTTGCTAGCACTCTCTACCCAAAGGGGCTCACTTCATGTTTTCCTGACCAA 1046
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 TTGTCCTGGACTGATGATGGCCAGTTGCTAGCACTCTCTACCCAAAGGGGCTCACTTCATGTTTTCCTGACCAA 1110
Query 1047 GCTTCCCATACTTGGGGATGCCTGCAGCACAAGGATTGCCTATCTCACCTCCCTCCTTGAAGTCACCGTAGCCA 1120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 GCTTCCCATACTTGGGGATGCCTGCAGCACAAGGATTGCCTATCTCACCTCCCTCCTTGAAGTCACCGTAGCCA 1184
Query 1121 ACCCTGTTGAAGGAGAGCTACCAATCACAGTTTCTGTTGATGTGGAACCCAACTTTGTGGCAGTAGGTCTTTAT 1194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 ACCCTGTTGAAGGAGAGCTACCAATCACAGTTTCTGTTGATGTGGAACCCAACTTTGTGGCAGTAGGTCTTTAT 1258
Query 1195 CATCTGGCTGTAGGAATGAATAATCGAGCTTGGTTTTATGTCCTTGGAGAAAATGCTGTGAAAAAAATTGAAAG 1268
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1259 CATCTGGCTGTAGGAATGAATAATCGAGCTTGGTTTTATGTCCTTGGAGAAAATGCTGTG-AAAAAATTGAAAG 1331
Query 1269 ATATGGAGTATCTGGGAACAGTAGCCAGTATTAGCCTTCATGC------------------------------- 1311
||||||||||||||||||||||||||||||||.||||||||.|
Sbjct 1332 ATATGGAGTATCTGGGAACAGTAGCCAGTATTTGCCTTCATTCTGACTATGCTGCTGCACTTTTTGAAGGCAAA 1405
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 1406 GTCCAGTTACATTTGATAGAAAGCGAAATCTTGGATGCTCAAGAAGAACGTGAGACTCGGCTTTTCCCAGCAGT 1479
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 1480 GGATGATAAGTGCCGTATCTTATGCCATGCCTTAACTAGTGATTTCCTCATCTATGGTACAGATACTGGTGTCG 1553
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 1554 TTCAGTATTTCTACATTGAAGACTGGCAATTCGTTAATGATTATCGACATCCTGTCAGTGTGAAAAAGATTTTT 1627
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 1628 CCCGACCCAAATGGGACCAGATTAGTTTTCATTGATGAAAAAAGTGATGGATTTGTTTACTGTCCAGTCAATGA 1701
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 1702 CGCTACCTATGAGATTCCAGATTTTTCACCAACCATTAAAGGTGTTCTTTGGGAAAACTGGCCAATGGATAAAG 1775
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 1776 GTGTATTTATTGCTTATGATGATGATAAGGTGTACACTTATGTCTTTCACAAGGACACTATACAAGGAGCCAAG 1849
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 1850 GTTATTTTGGCTGGTAGCACCAAAGTTCCTTTTGCTCATAAACCTTTGCTGCTATATAATGGAGAGCTGACCTG 1923
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 1924 CCAAACACAGAGTGGAAAAGTAAACAACATCTACCTTAGCACCCATGGCTTTCTCAGCAACTTAAAAGATACGG 1997
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 1998 GGCCTGACGAACTGAGACCAATGCTGGCACAGAATTTAATGCTAAAGAGGTTTTCTGATGCTTGGGAAATGTGC 2071
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 2072 AGGATTCTGAATGATGAGGCTGCCTGGAATGAGTTGGCCAGAGCTTGTCTACATCACATGGAAGTGGAGTTTGC 2145
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 2146 AATCCGTGTTTATCGGAGAATTGGAAATGTTGGCATAGTGATGTCCTTGGAACAAATAAAGGGAATAGAGGACT 2219
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 2220 ACAATCTTTTGGCAGGACACCTTGCCATGTTTACCAACGATTATAACCTGGCTCAGGACTTGTACCTTGCATCC 2293
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 2294 AGCTGTCCTATTGCTGCCCTGGAGATGAGAAGGGATTTACAGCATTGGGACAGTGCTCTACAACTGGCAAAGCA 2367
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 2368 TTTGGCCCCAGACCAGATACCTTTTATATCAAAAGAATATGCTATTCAGCTTGAATTCGCGGGTGATTATGTAA 2441
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 2442 ATGCTTTGGCTCATTATGAGAAAGGAATAACAGGTGATAATAAGGAACATGATGAAGCTTGTCTGGCTGGAGTG 2515
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 2516 GCCCAGATGTCCATAAGAATGGGAGACATACGTCGAGGGGTTAACCAAGCCCTCAAGCATCCCAGCAGGGTCCT 2589
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 2590 TAAAAGAGACTGTGGAGCCATATTGGAGAATATGAAGCAATTTTCAGAAGCGGCCCAACTGTATGAAAAAGGTC 2663
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 2664 TCTACTACGATAAAGCAGCATCTGTTTACATCCGCTCTAAGAATTGGGCAAAAGTTGGTGATCTTCTGCCCCAC 2737
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 2738 GTTTCTTCTCCTAAGATCCATTTGCAGTATGCCAAAGCCAAGGAAGCAGATGGAAGATACAAAGAAGCTGTTGT 2811
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 2812 AGCTTATGAAAATGCAAAACAGTGGCAAAGTGTAATCCGCATCTATCTGGATCACCTCAATAATCCTGAAAAAG 2885
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 2886 CTGTCAATATTGTTAGAGAGACCCAGTCTCTGGATGGAGCCAAAATGGTAGCCAGGTTTTTTCTACAGCTTGGT 2959
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 2960 GACTATGGGTCTGCCATCCAGTTTCTTGTCATGTCCAAATGCAACAATGAAGCTTTCACACTGGCTCAGCAACA 3033
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 3034 CAACAAAATGGAAATCTATGCAGATATTATTGGTTCTGAAGACACTACTAATGAAGACTATCAAAGCATTGCCT 3107
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 3108 TATACTTTGAAGGAGAAAAGAGATATCTTCAGGCTGGAAAATTCTTCTTGCTGTGTGGCCAATATTCACGAGCA 3181
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 3182 CTTAAACACTTCCTGAAATGCCCAAGCTCGGAAGATAATGTGGCAATAGAAATGGCAATTGAAACTGTTGGTCA 3255
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 3256 GGCCAAAGATGAACTGCTGACCAATCAGCTGATAGACCATCTCCTGGGGGAGAACGATGGCATGCCTAAGGATG 3329
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 3330 CCAAGTACCTGTTCCGCTTGTACATGGCTCTGAAGCAATACCGAGAAGCTGCCCAGACTGCCATCATCATTGCC 3403
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 3404 AGAGAAGAGCAGTCTGCAGGCAACTACCGGAATGCACACGATGTTCTCTTCAGTATGTATGCAGAACTGAAATC 3477
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 3478 CCAGAAGATCAAAATTCCCTCCGAGATGGCCACCAACCTCATGATTCTGCACAGCTATATACTAGTAAAGATTC 3551
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 3552 ATGTTAAAAATGGAGATCACATGAAAGGGGCTCGCATGCTCATTCGGGTGGCCAACAACATCAGCAAATTTCCA 3625
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 3626 TCACACATTGTACCCATCCTGACGTCAACTGTGATTGAGTGTCACAGGGCAGGCCTGAAGAACTCTGCTTTCAG 3699
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 3700 CTTCGCAGCTATGTTGATGAGGCCTGAATACCGCAGCAAAATAGATGCCAAATACAAAAAGAAGATCGAGGGAA 3773
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 3774 TGGTCAGGGAGAGACAGAGGGAAAATACCAAGCTCACCACTCCAGTAGCACAGGAAGAGAGAAGACCGCAAGAC 3847
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 3848 CTACCCATGCTTTCTGCCGTTGAATGTGCTATGAACTCCAGTTCCCAAAGGTGGCCCATGTAACACCCTAGAAC 3921
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 3922 CTAACCAATCCTAGGTACTCTTCCTCCTCCCTGGAGTGGATCAAGGGCTGGTGTGAGCTTGAGACCCGATATAT 3995
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 3996 CTGAGATAGAAGAGGCCACGACTCCATGTCCATTCTGCAAATTTCTTCTCCCAGAGTGTGAACTCCTCTGTCCT 4069
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 4070 GGATGTAAAAACAGTATCCCATATTGCATTGCAACAGGTCGACACATGTTGAAAGATGACTGGACGGTGTGTCC 4143
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 4144 ACATTGTGACTTCCCTGCTCTATACTCAGAATTGAAGATCATGCTAAACACTGAAAGCACATGTCCTATGTGTT 4217
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 4218 CAGAAAGATTAAACGCTGCTCAGCTGAAAAAGATTTCAGACTGTACCCAGTACCTGCGAACGGAGGAGGAACTG 4291
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 4292 TGATTGGCACGTGCAGATACAATGCTCCTGAGAAGACAGCATTTTCCACAGGAGGCTGTTTCCTCCCCTGGTGG 4365
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 4366 ATTTAAGAGACGGTCCTTTCTGGATACAGAGAAATGAAACAACGGTGACCTCTCCAGGTCGGCACTTTCCACTT 4439
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 4440 CTGTACGGTGGCAAAACGATGACATGTAACCTTGCTGTTTATTGTACTTTGTATATTATTTCCTCTTCAAAGTC 4513
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 4514 TTTCTTACACACTCTATCCTCTGCACTGTTAATAGTAACCTATGACATAATTGTAAATATTCAGCTTTTTGCTA 4587
Query 1312 -------------------------------------------- 1311
Sbjct 4588 ACTTTTGTATTTTGAAAAACTTTAAAATAAAATTGTTGACTAGA 4631
