Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_14236
- Subject:
- XR_001741311.2
- Aligned Length:
- 6030
- Identities:
- 1191
- Gaps:
- 4836
Alignment
Query 1 -----------------------------ATGAAGCGTATTTTCTCACTGCTAGAAAAGACTTGGCTTGGCGCA 45
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATAGTTCGCGTAGCGGCTCGAGCGTGGAGATGAAGCGTATTTTCTCACTGCTAGAAAAGACTTGGCTTGGCGCA 74
Query 46 CCAATACAGTTTGCCTGGCAAAAAACATCAGGAAACTACCTTGCAGTAACAGGAGCTGATTATATTGTGAAAAT 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 CCAATACAGTTTGCCTGGCAAAAAACATCAGGAAACTACCTTGCAGTAACAGGAGCTGATTATATTGTGAAAAT 148
Query 120 CTTTGATCGCCATGGTCAAAAAAGAAGTGAAATTAACTTACCTGGTAACTGTGTTGCCATGGATTGGGATAAAG 193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 CTTTGATCGCCATGGTCAAAAAAGAAGTGAAATTAACTTACCTGGTAACTGTGTTGCCATGGATTGGGATAAAG 222
Query 194 ATGGAGATGTCCTAGCAGTGATTGCTGAGAAATCTAGCTGCATTTATCTTTGGGATGCCAACACAAATAAGACC 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 ATGGAGATGTCCTAGCAGTGATTGCTGAGAAATCTAGCTGCATTTATCTTTGGGATGCCAACACAAATAAGACC 296
Query 268 AGCCAGTTAGACAATGGCATGAGGGATCAAATGTCTTTCCTTCTTTGGTCAAAAGTTGGAAGTTTCCTGGCTGT 341
||||||||||||||||||||||
Sbjct 297 AGCCAGTTAGACAATGGCATGA---------------------------------------------------- 318
Query 342 TGGAACTGTTAAAGGAAATTTGCTTATTTATAATCATCAGACATCTCGAAAGATTCCTGTCCTTGGAAAACATA 415
||||||||||
Sbjct 319 ----------------------------------------------------------------GGAAAACATA 328
Query 416 CTAAGAGAATCACTTGTGGATGTTGGAATGCAGAAAATCTGCTTGCTTTAGGTGGTGAAGATAAAATGATTACA 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 329 CTAAGAGAATCACTTGTGGATGTTGGAATGCAGAAAATCTGCTTGCTTTAGGTGGTGAAGATAAAATGATTACA 402
Query 490 GTTAGTAATCAGGAAGGTGACACGATAAGACAGACACAAGTGAGATCAGAGCCTAGCAACATGCAGTTTTTCTT 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 403 GTTAGTAATCAGGAAGGTGACACGATAAGACAGACACAAGTGAGATCAGAGCCTAGCAACATGCAGTTTTTCTT 476
Query 564 GATGAAGATGGATGACCGAACCTCTGCTGCTGAAAGCATGATAAGTGTGGTGCTTGGCAAGAAAACTTTGTTTT 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 GATGAAGATGGATGACCGAACCTCTGCTGCTGAAAGCATGATAAGTGTGGTGCTTGGCAAGAAAACTTTGTTTT 550
Query 638 TTTTAAATCTGAATGAACCAGATAACCCAGCTGATCTTGAATTTCAGCAGGACTTTGGCAACATTGTCTGCTAT 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 551 TTTTAAATCTGAATGAACCAGATAACCCAGCTGATCTTGAATTTCAGCAGGACTTTGGCAACATTGTCTGCTAT 624
Query 712 AATTGGTATGGTGATGGCCGCATCATGATTGGTTTTTCATGTGGACATTTTGTGGTCATTTCTACTCATACTGG 785
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 625 AATTGGTATGGTGATGGCCGCATCATGATTGGTTTTTCATGTGGACATTTTGTGGTCATTTCTACTCATACTGG 698
Query 786 AGAGCTTGGTCAAGAGATATTTCAGGCTCGTAACCATAAAGATAATCTAACCAGCATTGCAGTATCACAGACTC 859
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 699 AGAGCTTGGTCAAGAGATATTTCAGGCTCGTAACCATAAAGATAATCTAACCAGCATTGCAGTATCACAGACTC 772
Query 860 TTAACAAAGTTGCTACATGTGGAGATAACTGTATTAAAATCCAAGACTTGGTTGACTTAAAAGACATGTATGTT 933
|||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||
Sbjct 773 TTAACAAAGTTGCTACATGTGGAGATAACTGCATTAAAATCCAAGACTTGGTTGACTTAAAAGACATGTATGTT 846
Query 934 ATACTCAACCTGGATGAGGAAAATAAAGGATTGGGTACCTTGTCCTGGACTGATGATGGCCAGTTGCTAGCACT 1007
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 847 ATACTCAACCTGGATGAGGAAAATAAAGGATTGGGTACCTTGTCCTGGACTGATGATGGCCAGTTGCTAGCACT 920
Query 1008 CTCTACCCAAAGGGGCTCACTTCATGTTTTCCTGACCAAGCTTCCCATACTTGGGGATGCCTGCAGCACAAGGA 1081
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 921 CTCTACCCAAAGGGGCTCACTTCATGTTTTCCTGACCAAGCTTCCCATACTTGGGGATGCCTGCAGCACAAGGA 994
Query 1082 TTGCCTATCTCACCTCCCTCCTTGAAGTCACCGTAGCCAACCCTGTTGAAGGAGAGCTACCAATCACAGTTTCT 1155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 995 TTGCCTATCTCACCTCCCTCCTTGAAGTCACCGTAGCCAACCCTGTTGAAGGAGAGCTACCAATCACAGTTTCT 1068
Query 1156 GTTGATGTGGAACCCAACTTTGTGGCAGTAGGTCTTTATCATCTGGCTGTAGGAATGAATAATCGAGCTTGGTT 1229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1069 GTTGATGTGGAACCCAACTTTGTGGCAGTAGGTCTTTATCATCTGGCTGTAGGAATGAATAATCGAGCTTGGTT 1142
Query 1230 TTATGTCCTTGGAGAAAATGCTGTGAAAAAAATTGAAAGATATGGAGTATCTGGGAACAGTAGCCAGTATTAGC 1303
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||.||
Sbjct 1143 TTATGTCCTTGGAGAAAATGCTGTG-AAAAAATTGAAAGATATGGAGTATCTGGGAACAGTAGCCAGTATTTGC 1215
Query 1304 CTTCATGC------------------------------------------------------------------ 1311
||||||.|
Sbjct 1216 CTTCATTCTGACTATGCTGCTGCACTTTTTGAAGGCAAAGTCCAGTTACATTTGATAGAAAGCGAAATCTTGGA 1289
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 1290 TGCTCAAGAAGAACGTGAGACTCGGCTTTTCCCAGCAGTGGATGATAAGTGCCGTATCTTATGCCATGCCTTAA 1363
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 1364 CTAGTGATTTCCTCATCTATGGTACAGATACTGGTGTCGTTCAGTATTTCTACATTGAAGACTGGCAATTCGTT 1437
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 1438 AATGATTATCGACATCCTGTCAGTGTGAAAAAGATTTTTCCCGACCCAAATGGGACCAGATTAGTTTTCATTGA 1511
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 1512 TGAAAAAAGTGATGGATTTGTTTACTGTCCAGTCAATGACGCTACCTATGAGATTCCAGATTTTTCACCAACCA 1585
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 1586 TTAAAGGTGTTCTTTGGGAAAACTGGCCAATGGATAAAGGTGTATTTATTGCTTATGATGATGATAAGGTGTAC 1659
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 1660 ACTTATGTCTTTCACAAGGACACTATACAAGGAGCCAAGGTTATTTTGGCTGGTAGCACCAAAGTTCCTTTTGC 1733
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 1734 TCATAAACCTTTGCTGCTATATAATGGAGAGCTGACCTGCCAAACACAGAGTGGAAAAGTAAACAACATCTACC 1807
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 1808 TTAGCACCCATGGCTTTCTCAGCAACTTAAAAGATACGGGGCCTGACGAACTGAGACCAATGCTGGCACAGAAT 1881
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 1882 TTAATGCTAAAGAGGTTTTCTGATGCTTGGGAAATGTGCAGGATTCTGAATGATGAGGCTGCCTGGAATGAGTT 1955
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 1956 GGCCAGAGCTTGTCTACATCACATGGAAGTGGAGTTTGCAATCCGTGTTTATCGGAGAATTGGAAATGTTGGCA 2029
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 2030 TAGTGATGTCCTTGGAACAAATAAAGGGAATAGAGGACTACAATCTTTTGGCAGGACACCTTGCCATGTTTACC 2103
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 2104 AACGATTATAACCTGGCTCAGGACTTGTACCTTGCATCCAGCTGTCCTATTGCTGCCCTGGAGATGAGAAGGGA 2177
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 2178 TTTACAGCATTGGGACAGTGCTCTACAACTGGCAAAGCATTTGGCCCCAGACCAGATACCTTTTATATCAAAAG 2251
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 2252 AATATGCTATTCAGCTTGAATTCGCGGGTGATTATGTAAATGCTTTGGCTCATTATGAGAAAGGAATAACAGGT 2325
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 2326 GATAATAAGGAACATGATGAAGCTTGTCTGGCTGGAGTGGCCCAGATGTCCATAAGAATGGGAGACATACGTCG 2399
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 2400 AGGGGTTAACCAAGCCCTCAAGCATCCCAGCAGGGTCCTTAAAAGAGACTGTGGAGCCATATTGGAGAATATGA 2473
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 2474 AGCAATTTTCAGAAGCGGCCCAACTGTATGAAAAAGGTCTCTACTACGATAAAGCAGCATCTGTTTACATCCGC 2547
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 2548 TCTAAGAATTGGGCAAAAGTTGGTGATCTTCTGCCCCACGTTTCTTCTCCTAAGATCCATTTGCAGTATGCCAA 2621
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 2622 AGCCAAGGAAGCAGATGGAAGATACAAAGAAGCTGTTGTAGCTTATGAAAATGCAAAACAGTGGCAAAGTGTAA 2695
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 2696 TCCGCATCTATCTGGATCACCTCAATAATCCTGAAAAAGCTGTCAATATTGTTAGAGAGACCCAGTCTCTGGAT 2769
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 2770 GGAGCCAAAATGGTAGCCAGGTTTTTTCTACAGCTTGGTGACTATGGGTCTGCCATCCAGTTTCTTGTCATGTC 2843
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 2844 CAAATGCAACAATGAAGCTTTCACACTGGCTCAGCAACACAACAAAATGGAAATCTATGCAGATATTATTGGTT 2917
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 2918 CTGAAGACACTACTAATGAAGACTATCAAAGCATTGCCTTATACTTTGAAGGAGAAAAGAGATATCTTCAGGCT 2991
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 2992 GGAAAATTCTTCTTGCTGTGTGGCCAATATTCACGAGCACTTAAACACTTCCTGAAATGCCCAAGCTCGGAAGA 3065
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 3066 TAATGTGGCAATAGAAATGGCAATTGAAACTGTTGGTCAGGCCAAAGATGAACTGCTGACCAATCAGCTGATAG 3139
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 3140 ACCATCTCCTGGGGGAGAACGATGGCATGCCTAAGGATGCCAAGTACCTGTTCCGCTTGTACATGGCTCTGAAG 3213
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 3214 CAATACCGAGAAGCTGCCCAGACTGCCATCATCATTGCCAGAGAAGAGCAGTCTGCAGGCAACTACCGGAATGC 3287
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 3288 ACACGATGTTCTCTTCAGTATGTATGCAGAACTGAAATCCCAGAAGATCAAAATTCCCTCCGAGATGGCCACCA 3361
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 3362 ACCTCATGATTCTGCACAGCTATATACTAGTAAAGATTCATGTTAAAAATGGAGATCACATGAAAGGGGCTCGC 3435
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 3436 ATGCTCATTCGGGTGGCCAACAACATCAGCAAATTTCCATCACCAGCTCCATGAAGTGGTATGTCAGGGCCCCA 3509
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 3510 AGACCACTCCCAGGTTTGATGACTCTTCACTGGGAGGATTTACAAGAGTCAACACACAGTAGTACCAAAGCCGA 3583
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 3584 GATTTATCACAGCAAAAGGATCTGAGGCAAAATGAGCAGAAGGATTCACGCAAAGGCGAGCAGGTGCAGGCACG 3657
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 3658 GACCTCCAAGAGTCCCTTCCCAGTGGAGCACACAGGACGCAAGTTCCGTAACTCCTCCACGACTGACTTGTACA 3731
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 3732 ACATGGTGAAACGTAGAGTGCCAAGAAGCTCATTAGAGACTCAGCAGCCAGGAGTTTTATTGGGGTGTGGTCAC 3805
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 3806 ATAGGTGCCCCCTGCGTGGCATGTGCCCAGTTTTCCAGGCTCCCAGAGAGCAGGTGTTCGGCATAAACCACGTT 3879
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 3880 GTTTGTACAAAGATTTTAGGCACGGTGAGCCACTCATCAGTTCTGGAAACGGTGGGAACCGTCTCCAAATCTAT 3953
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 3954 GTTCCAGATGCGAGCCGAGGGTTAGCTGTTCAAGCCTTTCCAAGGATGACAGTCTCAGGCCTGCACACACAAGT 4027
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 4028 ACTTTTCTGAACAAACTGGGACAAAAGAAATAACATTTGCCCAAGATCACATTGTCAGCTAATAATAGCCTGAC 4101
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 4102 TCTGTGTTCACAAGCACGGTAGGACGTTGCCTCTGAAAAGGCCTCACTATTCCAAAAGACATGTCATGATAACA 4175
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 4176 TTCTTAAGTGATTAAATACTGTCACATTACATGACAGGGATCAGCAAACTTTTTCTGTAAAGGACCAGATGTTA 4249
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 4250 AATATTTTAGACTTCGTGAGACATGTGGCCTCTGTCACAACTGCTCAACTCTGCCATCTTCTCATGAATAATAC 4323
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 4324 GTAAACGAATGGGCATGACTGTGTTTCAATAGAGCTTTATGTTTGGACACAAATGTTAACCACATACACTTTTA 4397
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 4398 ACATGTCACAAAAATATTTTTCTTTTGATGTTTTTTCAACCATTTAAAAATGTAAAAATCATCCTTAGCTCATG 4471
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 4472 GACCATACAAAAAGTCAGAGGGCTAGATTTGGTCCATGGGTCATAATTGGCCAACCCACATTCTCTAAGTGTAT 4545
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 4546 TTTTGTTGTTGTTACATCAAAGTCTACCATGCGGGCAAGGTATGGGATAGGACAGGCACTCTCATGACTGCTGG 4619
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 4620 TGGGGATGGAAATTGGTATGGCCTTTGCAGAAAGCAGTTTGGCAATTTGTGGTAAGAGTATTTTTTAAAAGGTC 4693
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 4694 CTGTTTTTGAGCCGGTAATTCTGGGTGTCTGTCCTGAAGAAAGAATTTGATGCCTGCAGAGAGATTAGTGTATA 4767
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 4768 AAGTCATTAATCCCCCTAATGCTTTTATCAGCAGTCCTGTCAGATGCAAAAAATATCTAAGAGGCATGAAAGGA 4841
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 4842 AACTCATGGAAGTGTTGCCTCAAGGGGTGCAGGTCCTAGTGTTACAAGGCAGAACATGGTGTCATCAAAGGAAA 4915
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 4916 AGCACTTGATGGGCAGTTAGCCTGACCCCACAGCTACGTACTTTCCTCATTAAACAGATCATATCTGGTTCTTT 4989
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 4990 GCAGAAAAAGCAAAGTTCAGAGACCATGACCCTGTTTTCCTACAGAACCAGGGTGGAATCCCGCCTGTATCACT 5063
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 5064 GAGGACAGCAGACACTGTGCTGTTGCTGCTCTCCCCTTTTCTCTTGCAGACATTGTACCCATCCTGACGTCAAC 5137
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 5138 TGTGATTGAGTGTCACAGGGCAGGCCTGAAGAACTCTGCTTTCAGCTTCGCAGCTATGTTGATGAGGCCTGAAT 5211
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 5212 ACCGCAGCAAAATAGATGCCAAATACAAAAAGAAGATCGAGGGAATGGTCAGGAGACCCGATATATCTGAGATA 5285
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 5286 GAAGAGGCCACGACTCCATGTCCATTCTGCAAATTTCTTCTCCCAGAGTGTGAACTCCTCTGTCCTGGATGTAA 5359
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 5360 AAACAGTATCCCATATTGCATTGCAACAGGTCGACACATGTTGAAAGATGACTGGACGGTGTGTCCACATTGTG 5433
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 5434 ACTTCCCTGCTCTATACTCAGAATTGAAGATCATGCTAAACACTGAAAGCACATGTCCTATGTGTTCAGAAAGA 5507
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 5508 TTAAACGCTGCTCAGCTGAAAAAGATTTCAGACTGTACCCAGTACCTGCGAACGGAGGAGGAACTGTGATTGGC 5581
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 5582 ACGTGCAGATACAATGCTCCTGAGAAGACAGCATTTTCCACAGGAGGCTGTTTCCTCCCCTGGTGGATTTAAGA 5655
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 5656 GACGGTCCTTTCTGGATACAGAGAAATGAAACAACGGTGACCTCTCCAGGTCGGCACTTTCCACTTCTGTACGG 5729
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 5730 TGGCAAAACGATGACATGTAACCTTGCTGTTTATTGTACTTTGTATATTATTTCCTCTTCAAAGTCTTTCTTAC 5803
Query 1312 -------------------------------------------------------------------------- 1311
Sbjct 5804 ACACTCTATCCTCTGCACTGTTAATAGTAACCTATGACATAATTGTAAATATTCAGCTTTTTGCTAACTTTTGT 5877
Query 1312 ------------------------------------ 1311
Sbjct 5878 ATTTTGAAAAACTTTAAAATAAAATTGTTGACTAGA 5913
