Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_14270
Subject:
XR_001781568.1
Aligned Length:
2132
Identities:
854
Gaps:
1200

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  CTCCAGACTACAGCTCCCGGCATGCCCTGCACCTGGTACTCGCCCGCGGCGTGCGGAGGGAAGGATGCAGACAA  74

Query    1  -----------ATGAGGATGGAGGCCGGTGAGGCAGCGCCGCCGGCGGGGGCGGGCGGCCGCGCCGCAGGCGGC  63
                       |||||||||||||||||.|||||||||||.||||.||||||||||||||||.|||..||||||
Sbjct   75  CGCGGCCGGCGATGAGGATGGAGGCCGGGGAGGCAGCGCCACCGGTGGGGGCGGGCGGCCGCCCCGGGGGCGGC  148

Query   64  TGGGGCAAGTGGGTGCGGCTCAACGTGGGGGGCACGGTGTTCCTGACCACCCGGCAGACGCTGTG-CGGCGAGC  136
            ||||||||||||||||||||.||||||||||||||||||||||||||||||||.||||||||||| ||| ||||
Sbjct  149  TGGGGCAAGTGGGTGCGGCTGAACGTGGGGGGCACGGTGTTCCTGACCACCCGCCAGACGCTGTGTCGG-GAGC  221

Query  137  AGAAGTCCTTCCTCAGCCGCCTGTGCCAGGGGGAAGAGCTGCAGTCGGACCGGGATGAGACCGGGGCCTACCTC  210
            |||||||||||||||||||||||||.|||||.||||||||.||.||||||.|||||||||||||||||||||||
Sbjct  222  AGAAGTCCTTCCTCAGCCGCCTGTGTCAGGGCGAAGAGCTTCAATCGGACAGGGATGAGACCGGGGCCTACCTC  295

Query  211  ATTGACCGTGACCCCACCTACTTCGGGCCCATCCTGAACTTCCTCCGGCATGGCAAGCTGGTGCTGGACAAGGA  284
            ||||||||||||||||||||||||||||||||||||||.||||||.|||||||.||..||||||||||||||||
Sbjct  296  ATTGACCGTGACCCCACCTACTTCGGGCCCATCCTGAATTTCCTCAGGCATGGAAAATTGGTGCTGGACAAGGA  369

Query  285  CATGGCTGAGGAGGGGGTCCTGGAGGAAGCCGAGTTCTACAACATCGGCCCGCTGATCCGCATCATCAAAGACC  358
            ||||||.|||||||||||||||||||||||.||||||||||||||.||.||.|||||.||.||||||||||||.
Sbjct  370  CATGGCCGAGGAGGGGGTCCTGGAGGAAGCAGAGTTCTACAACATTGGTCCTCTGATTCGAATCATCAAAGACA  443

Query  359  GGATGGAAGAGAAGGACTACACGGTCACCCAGGTCCCACCCAAGCATGTGTACCGCGTGCTGCAGTGCCAGGAG  432
            |||||||.|||||.||||||||.||..|||||||.|||||.||||||||.|||||.||||||||||||||.|||
Sbjct  444  GGATGGAGGAGAAAGACTACACAGTGGCCCAGGTGCCACCTAAGCATGTATACCGAGTGCTGCAGTGCCAAGAG  517

Query  433  GAGGAGCTCACGCAAATGGTCTCAACCATGTCTGATGGCTGGCGCTTCGAGCAGCTGGTGAACATCGGCTCGTC  506
            |||||||||||.||.|||||.||.||.|||||.||.|||||||||||||||||||||||||||||||||||.||
Sbjct  518  GAGGAGCTCACACAGATGGTATCCACTATGTCCGACGGCTGGCGCTTCGAGCAGCTGGTGAACATCGGCTCCTC  591

Query  507  CTACAACTACGGCAGCGAGGACCAGGCAGAGTTCCTGTGTGTGGTGTCCAAGGAGCTCCACAGCACCCCAAACG  580
            |||||||||.||.||.|||||||||||.||||||||||||||||||||.|||||||||||||||.|||||.|||
Sbjct  592  CTACAACTATGGGAGTGAGGACCAGGCCGAGTTCCTGTGTGTGGTGTCTAAGGAGCTCCACAGCTCCCCACACG  665

Query  581  GGCTGAGCTCAGAGTCCAGCCGCAAAACCAAGAGCACGGAGGAGCAGCTGGAGGAGCAGCAGCAGCAGGAGGAG  654
            |.||||||||.|||||||..|||||..|||||||||||||.|||||||||||||||||||.||.||      ||
Sbjct  666  GCCTGAGCTCCGAGTCCACTCGCAAGGCCAAGAGCACGGACGAGCAGCTGGAGGAGCAGCGGCGGC------AG  733

Query  655  GAGGTGGAGGAGGTGGAGGTGGAACAGGTGCAGGTGGAGGCAGATGCACAGGAGAAAGCCCAGTCATCTCAGGA  728
            ||||||||||||||||||||||..|||||||||||||||||.|||||.|||||||||||||.||||||||||||
Sbjct  734  GAGGTGGAGGAGGTGGAGGTGGCCCAGGTGCAGGTGGAGGCGGATGCCCAGGAGAAAGCCCTGTCATCTCAGGA  807

Query  729  TCCCGCTAACCTTTTCTCCCTCCCACCACTG---CCTCCTCCTCCGCTTCCCGCTGGAGG--------------  785
            |||||||||||||||||||||||||||||.|   |||||||||||||||||.||||||||              
Sbjct  808  TCCCGCTAACCTTTTCTCCCTCCCACCACCGCCTCCTCCTCCTCCGCTTCCTGCTGGAGGTCCTGCTTCATCTT  881

Query  786  --------------------------------------------TTCCC-------------------------  790
                                                        |||||                         
Sbjct  882  CATCCACCTCCTCTTCCTCCTGGATCTCATCTGCACCCTGCCTCTTCCCTCTCTGCCCCTGCCCAGGTTTCCTC  955

Query  791  --------------------------------------------------------------------------  790
                                                                                      
Sbjct  956  TCCGCCTGCTCCCGTCTCCACCCTGGGGCTGCCCTAGTCCCAGTCTCCCGCGCCCTCTCCCCAAGCCCCCTCGC  1029

Query  791  --------------------------------------------------------------------------  790
                                                                                      
Sbjct 1030  CCTGCATCCCCAAGCATCCTGCCTGCCGCCTCCTTCGCCCCTTCCAGCCCCTCCTGCCTCCTGGCCTGGGGAGG  1103

Query  791  --------------------------------------------------------------------------  790
                                                                                      
Sbjct 1104  AGGGGCGTGGCCGCATCTGCTCTTTGTCCTCCAACCCAGCAGAGCACCTCTGAGGCTGGCCTTGGCCACAGGCC  1177

Query  791  ----------------------------------------------GTCCGCACCCTCTCAGACCTGAGGCTGA  818
                                                          ||||||||||||.||||||..||.||||
Sbjct 1178  CCACTCTTCCCACTTGCCTCCTCACGTTTCCTCCTTGCAGGTCCCTGTCCGCACCCTCCCAGACCCAAGCCTGA  1251

Query  819  GCTTGCAGTGAGGGCTTCTCCTCGGCCCCTCGCCCGCCCCCAGAGCTGCCATCCCTGCTGTTACAAGCCAGAGG  892
            ||||||||||||.|   ||||||||||||.||||||||||||||||||||..|||||||.||||||||||||||
Sbjct 1252  GCTTGCAGTGAGAG---CTCCTCGGCCCCGCGCCCGCCCCCAGAGCTGCCGCCCCTGCTATTACAAGCCAGAGG  1322

Query  893  CACCCGGATGTGAGGCCCCAGATCACCTCCAGGGACTTGGGGTTCCCATC------------------------  942
            ||||||||||||||.|||||||||||||||||||||||||||||||.|||                        
Sbjct 1323  CACCCGGATGTGAGCCCCCAGATCACCTCCAGGGACTTGGGGTTCCGATCTGAAATCCTTTATTTTTGTACCAC  1396

Query  943  --------------------------------------------------------------------------  942
                                                                                      
Sbjct 1397  GGGGTGGGCCCCTGGCCCGAGGAGGAAGACAAGCCCTCTACCTTGTCAGTGCTGCCTGCATCTGCCGGGCTGAG  1470

Query  943  --------------------------------------------------------------------------  942
                                                                                      
Sbjct 1471  ACTCACTCCTGCCTTGGGGCCCAGGCCTGGGGCCCTCTGGGACCTTGGAAGGCCTGACATGGGTCCTGGGGTCT  1544

Query  943  --------------------------------------------------------------------------  942
                                                                                      
Sbjct 1545  CCAGGCAGAGACGCCAAGGCCAAACTGTGGCACTACCTACCCATATCTTCCAGGCCCTTTTGTCCCCTCACCTG  1618

Query  943  --------------------------------------------------------------------------  942
                                                                                      
Sbjct 1619  GGCGCCCTTGCTGCATGGCGGATACACTCCCTCCCAGTCCCATCATAGCACCTCTTAGAGCCTCAGTCTCTATG  1692

Query  943  --------------------------------------------------------------------------  942
                                                                                      
Sbjct 1693  GCACCATAGGGTCATCCTCTCCTCCCACCTACCTCACAGGGTTGTTGTGAGAATCAGGGAGGATCATGGGGTTC  1766

Query  943  --------------------------------------------------------------------------  942
                                                                                      
Sbjct 1767  CTGGGAGCCCTGAGTGTGTTGGGGCTACAATCATTACCTTCTTAGGGGAAGGGCTCTAGCCCCGCCCCTGTATG  1840

Query  943  --------------------------------------------------------------------------  942
                                                                                      
Sbjct 1841  GGACACTATGGCCTCAGATACTGGTGGGGGACAATGTGAGGACTTTGCCAGGCAGGAAGGAAGTTACAGGCTTA  1914

Query  943  --------------------------------------------------------------------------  942
                                                                                      
Sbjct 1915  ACAGCACCTTGGCCACCACTTCTCTGTGCCACCGTGTGTTTGGCAGCAGAGTACAGTGTCCAGGGACTTGGGAT  1988

Query  943  --------------------------------------------------------------------------  942
                                                                                      
Sbjct 1989  GGGGAAGGGGACAGGTGTAACGGGTTGAGCTGTCCCGCCCGTGTCTTGACCACCCCGGGATGGGCACATGTCTG  2062

Query  943  ------------------------------------------------------------  942
                                                                        
Sbjct 2063  TCAGTTGTGTCCCACCCGCCATGAAATAAAGCTGAACAAACAGGCTTGGCCTGGCTGCCA  2122

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.