Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_14299
Subject:
XM_011532305.3
Aligned Length:
3048
Identities:
1666
Gaps:
1380

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGCACCCCGATGCGACCGACAGTGGCGGCGCCGGCCCCAGCCCCGCGCGGGCCGCAGGCGCCGGCGGCCGTCC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TGTCTCGGGCTTCAGGGGCGAGCGGCGGCCGGAGTCCCCGGGGGACGCGGAGGCAGCAGCAGCGGCGGCGCCGG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GGGCCCCGGGCGGCCGGAGCTGGTGGAAGCCCGTGGCGGTGGCCGCACTCGCCGCCGTGGCCCTCTCCTTCCTG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GGGCCCGGCAGCGGGGAGGCGGCGGGGGCCGCGGGGCTGAGCTCCGTCCTGTTCAGGCTCAGCCTGTACCTGAG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CTGCGCGGCGGCCGCCTTCCTGCTGGGGATCCTGTTTGCCCTCGTCTGCCGGAGCCCGCGCGCCCAGCCGCCCG  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  ACTTCGCCGCCGCCTGGAGCCGGCTGGCCGCGACCTCAGCCGCCCGCCGCCCGCCGGGGAGTCCTGTGTATGGA  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  AACTCACATGAGTCAGCTCAGTCTAGAAGGGTAGTAATTTCTCATAATATGGATAAAGCTCTGAAAGAAGTGTT  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  CGACTACAGTTATAGAGATTACATTCTGTCCTGGTATGGAAACCTCAGCAGAGATGAGGGACAACTTTACCATC  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  TGCTCTTGGAAGACTTTTGGGAAATTGCCAGACAGCTGCACCACAGACTGAGTCACGTGGATGTGGTTAAAGTT  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  GTCTGCAATGATGTTGTGAGGACTTTACTCACTCATTTCTGTGACCTGAAAGCTGCCAATGCCAGACATGAAGA  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  ACAGCCAAGACCTTTTGTGTTGCACGCATGCTTGAGGAACTCAGATGATGAAGTAAGATTTCTACAAACGTGTT  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  CTCGGGTTCTGGTGTTTTGTCTCCTCCCCTCAAAGGATGTGCAGTCTCTCAGCTTACGTATAATGCTTGCAGAA  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  ATTCTCACAACAAAAGTCTTGAAGCCGGTAGTGGAGTTACTGAGTAATCCAGATTACATTAACCAAATGCTGCT  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  TGCCCAGCTGGCGTACAGAGAGCAAATGAATGAGCATCACAAGAGAGCCTACACCTATGCCCCCTCTTACGAGG  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  ACTTCATCAAGCTCATTAACAGCAACTCTGATGTGGAGTTCTTGAAGCAACTAAGGTATCAAATTGTAGTGGAA  1110

Query    1  ---------------------------------------------------------------------ATGAA  5
                                                                                 |||||
Sbjct 1111  ATAATCCAGGCGACTACAATTAGCAGCTTTCCCCAACTGAAGAGGCACAAAGGTAAAGAAACTGCGGCAATGAA  1184

Query    6  AGCTGATCTCCTGAGGGCCAGGAACATGAAGAGGTACATCAACCAACTGACTGTGGCAAAGAAGCAGTGTGAGA  79
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  AGCTGATCTCCTGAGGGCCAGGAACATGAAGAGGTACATCAACCAACTGACTGTGGCAAAGAAGCAGTGTGAGA  1258

Query   80  AGAGAATCCGAATCCTGGGAGGCCCTGCCTATGACCAGCAAGAGGATGGGGCCCTGGATGAGGGGGAAGGGCCT  153
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  AGAGAATCCGAATCCTGGGAGGCCCTGCCTATGACCAGCAAGAGGATGGGGCCCTGGATGAGGGGGAAGGGCCT  1332

Query  154  CAAAGCCAGA------------------------------------AGATTCTTCAGTTTGAAGATATCTTGGC  191
            ||||||||||                                    ||||||||||||||||||||||||||||
Sbjct 1333  CAAAGCCAGAAGCAGAAGCTACAGATAGAAGGTTCAATATCTCCACAGATTCTTCAGTTTGAAGATATCTTGGC  1406

Query  192  CAATACGTTCTACCGAGAGCACTTTGGAATGTACATGGAAAGGATGGACAAAAGAGCTCTGATTAGTTTTTGGG  265
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  CAATACGTTCTACCGAGAGCACTTTGGAATGTACATGGAAAGGATGGACAAAAGAGCTCTGATTAGTTTTTGGG  1480

Query  266  AATCTGTGGAACATTTAAAGAATGCTAACAAGAATGAAATTCCACAATTAGTTGGTGAAATTTATCAGAATTTC  339
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  AATCTGTGGAACATTTAAAGAATGCTAACAAGAATGAAATTCCACAATTAGTTGGTGAAATTTATCAGAATTTC  1554

Query  340  TTTGTGGAGAGCAAAGAAATATCTGTGGAAAAATCACTTTACAAAGAAATTCAGCAGTGTCTTGTAGGAAATAA  413
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555  TTTGTGGAGAGCAAAGAAATATCTGTGGAAAAATCACTTTACAAAGAAATTCAGCAGTGTCTTGTAGGAAATAA  1628

Query  414  AGGTATTGAAGTATTCTACAAAATCCAGGAAGATGTTTATGAGACCCTAAAGGACAGGTATTACCCTTCATTTA  487
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||
Sbjct 1629  AGGTATTGAAGTATTCTACAAAATCCAGGAAGATGTTTATGAGACCCTAAAGGATAGGTATTACCCTTCATTTA  1702

Query  488  TTGTCAGTGACCTGTATGAGAAATTGTTGATAAAAGAGGAAGAAAAACATGCCTCACAGATGATTTCCAACAAG  561
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703  TTGTCAGTGACCTGTATGAGAAATTGTTGATAAAAGAGGAAGAAAAACATGCCTCACAGATGATTTCCAACAAG  1776

Query  562  GATGAGATGGGCCCAAGAGATGAGGCTGGTGAGGAAGCCGTGGATGATGGTACCAATCAGATCAATGAACAAGC  635
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777  GATGAGATGGGCCCAAGAGATGAGGCTGGTGAGGAAGCCGTGGATGATGGTACCAATCAGATCAATGAACAAGC  1850

Query  636  CAGTTTTGCTGTAAACAAACTGCGAGAACTAAATGAGAAACTTGAATATAAAAGGCAAGCTCTAAATTCTATTC  709
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851  CAGTTTTGCTGTAAACAAACTGCGAGAACTAAATGAGAAACTTGAATATAAAAGGCAAGCTCTAAATTCTATTC  1924

Query  710  AAAATGCACCAAAACCTGACAAGAAGATTGTTTCCAAGTTGAAGGATGAAATAATCCTAATAGAGAAAGAACGC  783
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925  AAAATGCACCAAAACCTGACAAGAAGATTGTTTCCAAGTTGAAGGATGAAATAATCCTAATAGAGAAAGAACGC  1998

Query  784  ACAGACCTTCAGCTGCACATAGCAAGAACGGATTGGTGGTGTGAAAACCTTGGCATGTGGAAAGCCTCCATCAC  857
            ||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999  ACAGACCTTCAGCTGCACATGGCAAGAACGGATTGGTGGTGTGAAAACCTTGGCATGTGGAAAGCCTCCATCAC  2072

Query  858  CAGTGGAGAGGTTACAGAAGAGAATGGTGAGCAATTGCCATGTTACTTTGTCATGGTAAGCCTACAAGAAGTTG  931
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073  CAGTGGAGAGGTTACAGAAGAGAATGGTGAGCAATTGCCATGTTACTTTGTCATGGTAAGCCTACAAGAAGTTG  2146

Query  932  GAGGAGTTGAAACTAAGAACTGGACGGTCCCCAGAAGGCTCAGCGAGTTTCAGAATTTACACCGGAAACTCAGT  1005
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2147  GAGGAGTTGAAACTAAGAACTGGACGGTCCCCAGAAGGCTCAGCGAGTTTCAGAATTTACACCGGAAACTCAGT  2220

Query 1006  GAGTGCGTCCCTTCTTTAAAAAAAGTCCAGTTGCCTTCTCTTAGCAAGCTGCCTTTCAAATCTATAGATCAAAA  1079
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2221  GAGTGCGTCCCTTCTTTAAAAAAAGTCCAGTTGCCTTCTCTTAGCAAGCTGCCTTTCAAATCTATAGATCAAAA  2294

Query 1080  GTTTATGGAAAAGTCGAAGAATCAATTAAATAAGTTTTTAC---------------------------------  1120
            |||||||||||||||||||||||||||||||||||||||||                                 
Sbjct 2295  GTTTATGGAAAAGTCGAAGAATCAATTAAATAAGTTTTTACAGAATCTGCTTTCAGATGAAAGACTGTGTCAGA  2368

Query 1121  --------------------------------------------------------------------------  1120
                                                                                      
Sbjct 2369  GTGAAGCACTTTATGCCTTCTTGAGCCCTTCTCCTGACTACCTCAAGGTTATCGACGTGCAGGGGAAAAAAAAT  2442

Query 1121  ----------------------------------------------------------AGGAGGAGACAGAGGA  1136
                                                                      ||||||||||||||||
Sbjct 2443  TCTTTTTCATTATCCTCATTTTTGGAAAGACTTCCTCGCGACTTCTTCTCCCACCAGGAGGAGGAGACAGAGGA  2516

Query 1137  GGACAGTGACCTGTCAGATTATGGTGATGATGTGGATGGGAGGAAAGACGCCTTGGCTGAACCATGTTTCATGT  1210
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2517  GGACAGTGACCTGTCAGATTATGGTGATGATGTGGATGGGAGGAAAGACGCCTTGGCTGAACCATGTTTCATGT  2590

Query 1211  TGATTGGGGAGATTTTTGAACTTCGAGGAATGTTTAAATGGGTGAGAAGAACATTAATTGCCCTCGTTCAGGTC  1284
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2591  TGATTGGGGAGATTTTTGAACTTCGAGGAATGTTTAAATGGGTGAGAAGAACATTAATTGCCCTCGTTCAGGTC  2664

Query 1285  ACTTTTGGAAGAACCATCAACAAACAAATCCGGGACACAGTCAGCTGGATTTTCAGTGAGCAAATGTTGGTTTA  1358
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2665  ACTTTTGGAAGAACCATCAACAAACAAATCCGGGACACAGTCAGCTGGATTTTCAGTGAGCAAATGTTGGTTTA  2738

Query 1359  CTACATCAATATTTTCCGGGATGCTTTTTGGCCAAATGGGAAGTTGGCACCACCGACCACAATCAGAAGCAAAG  1432
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2739  CTACATCAATATTTTCCGGGATGCTTTTTGGCCAAATGGGAAGTTGGCACCACCGACCACAATCAGAAGCAAAG  2812

Query 1433  AGCAAAGTCAGGAAACAAAACAGAGAGCACAGCAAAAGCTGCTTGAAAACATTCCAGATATGCTTCAGAGCCTT  1506
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2813  AGCAAAGTCAGGAAACAAAACAGAGAGCACAGCAAAAGCTGCTTGAAAACATTCCAGATATGCTTCAGAGCCTT  2886

Query 1507  GTTGGACAGCAAAATGCCCGCCACGGTATAATAAAAATATTCAATGCACTGCAAGAAACAAGAGCCAACAAGCA  1580
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2887  GTTGGACAGCAAAATGCCCGCCACGGTATAATAAAAATATTCAATGCACTGCAAGAAACAAGAGCCAACAAGCA  2960

Query 1581  TCTGTTATATGCGCTGATGGAACTGCTGCTAATTGAACTGTGTCCTGAGCTGAGAGTTCATTTAGATCAACTTA  1654
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2961  TCTGTTATATGCGCTGATGGAACTGCTGCTAATTGAACTGTGTCCTGAGCTGAGAGTTCATTTAGATCAACTTA  3034

Query 1655  AAGCTGGCCAAGTT  1668
            ||||||||||||||
Sbjct 3035  AAGCTGGCCAAGTT  3048

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